diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml index 75a40a5..e48f867 100644 --- a/.github/workflows/rworkflows.yml +++ b/.github/workflows/rworkflows.yml @@ -38,7 +38,7 @@ jobs: cont: ~ rspm: ~ steps: - - uses: neurogenomics/rworkflows@master + - uses: neurogenomics/rworkflows@dev with: run_bioccheck: ${{ false }} run_rcmdcheck: ${{ true }} diff --git a/NEWS.md b/NEWS.md index f484013..aba6cca 100644 --- a/NEWS.md +++ b/NEWS.md @@ -16,6 +16,9 @@ - Now uses `get_bg` to create background using *gprofiler*. * `get_valid_gene_lists` - Throw error when 0 valid gene lists found. +* `get_unfinished_list_names` + - Fix example +* Use *rworkflows@dev* to avoid API limit. # MultiEWCE 0.1.8 diff --git a/R/get_unfinished_list_names.R b/R/get_unfinished_list_names.R index 23f3dc9..d0bc421 100644 --- a/R/get_unfinished_list_names.R +++ b/R/get_unfinished_list_names.R @@ -12,7 +12,7 @@ #' @export #' @examples #' gene_data <- HPOExplorer::load_phenotype_to_genes() -#' list_names <- unique(gene_data$hpo_name)[seq(3)] +#' list_names <- unique(gene_data$hpo_id)[seq(3)] #' save_dir_tmp <- file.path(tempdir(),"results") #' ctd <- load_example_ctd() #' res_files <- ewce_para(ctd = ctd,