From efb099e2fe6f177eae6c6bdf5b9bc4f0297de6f8 Mon Sep 17 00:00:00 2001
From: Tomrrr1 <76951517+Tomrrr1@users.noreply.github.com>
Date: Tue, 13 Feb 2024 10:01:38 +0000
Subject: [PATCH] Addressed EpiCompare Windows bug. Explicitly specify type in
 the shQuote command in report_header.r

---
 DESCRIPTION       |  2 +-
 R/report_header.R | 10 +++++++---
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 2a70205..5892342 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: EpiCompare
 Title: Comparison, Benchmarking & QC of Epigenomic Datasets
-Version: 1.7.2
+Version: 1.7.3
 Authors@R: c(
     person(given = "Sera", family = "Choi", 
         email = "serachoi1230@gmail.com", 
diff --git a/R/report_header.R b/R/report_header.R
index a4677c2..005692c 100644
--- a/R/report_header.R
+++ b/R/report_header.R
@@ -10,17 +10,21 @@
 report_header <- function(){ 
   paste0(
     "<div class='report-header'>",
-    "<a href=",shQuote("https://github.com/neurogenomics/EpiCompare"),
+    "<a href=",shQuote("https://github.com/neurogenomics/EpiCompare", type = "sh"),
     " target='_blank'>",
     "<code>EpiCompare</code>",
     "</a>",
     "<code>Report</code>",
-    "<a href=",shQuote("https://doi.org/doi:10.18129/B9.bioc.EpiCompare"),
+    "<a href=",shQuote("https://doi.org/doi:10.18129/B9.bioc.EpiCompare", type = "sh"),
     " target='_blank'>",
     "<img src=",
-    shQuote(system.file('hex','hex.png',package = 'EpiCompare')),
+    shQuote(system.file('hex','hex.png',package = 'EpiCompare'), type = "sh"),
     " height='100'",">",
     "</a>",
     "</div>"
   ) 
 }
+
+
+
+