CHANGELOG.md

v0.3.0 (Thu Oct 24 2024)

💥 Breaking Changes

• [MODEL] Model basic pipeline availability info in imaging session #347 (@alyssadai)

🚀 Enhancements

• [ENH] Add derivatives command and pipeline-catalog submodule #349 (@alyssadai)
• [REF] Rename Neurobagel-created session to ses-unnamed #358 (@alyssadai)
• [ENH] More user-friendly handling of input decoding/reading errors #337 (@alyssadai)

🏠 Internal

• [INF] Add script to generate nb_vocab.ttl #360 (@alyssadai)
• [MNT] Removed build docker nightly workflow file #348 (@rmanaem)

📝 Documentation

• [DOC] Remove usage instructions & update development environment section in README #365 (@alyssadai)

Authors: 2

• Alyssa Dai (@alyssadai)
• Arman Jahanpour (@rmanaem)

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v0.2.2 (Fri Jul 19 2024)

Release Notes

[CI] Release the CLI (#330)

This release introduces short option names for CLI commands and fixes a bug that prevented hyphens in column names from being parsed.

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🚀 Enhancements

• [CI] Release the CLI #330 (@alyssadai)
• [ENH] Update help text and add short CLI options #316 (@alyssadai)

🐛 Bug Fixes

• [FIX] Handle dashes (/any chars that are not python variable valid) in column names #313 (@alyssadai)

📝 Documentation

• [DOC] Note case sensitivity of subject IDs in bids IDs check error #317 (@alyssadai)

Authors: 1

• Alyssa Dai (@alyssadai)

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v0.2.2 (Fri Jul 19 2024)

Release Notes

[MNT] Release the CLI (#291)

We have updated the Neurobagel data model to allow users to specify phenotypic information at the session level (neurobagel/planning#83). This release updates the CLI so you can create .jsonld files according to the new data model.

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🚀 Enhancements

• [ENH] Update help text and add short CLI options #316 (@alyssadai)
• [MNT] Release the CLI #291 (@alyssadai @surchs)

🐛 Bug Fixes

• [FIX] Handle dashes (/any chars that are not python variable valid) in column names #313 (@alyssadai)

📝 Documentation

• [DOC] Note case sensitivity of subject IDs in bids IDs check error #317 (@alyssadai)

Authors: 2

• Alyssa Dai (@alyssadai)
• Sebastian Urchs (@surchs)

---

v0.2.2 (Thu Apr 11 2024)

Release Notes

[MNT] Release the CLI (#291)

We have updated the Neurobagel data model to allow users to specify phenotypic information at the session level (neurobagel/planning#83). This release updates the CLI so you can create .jsonld files according to the new data model.

---

🚀 Enhancements

• [MNT] Release the CLI #291 (@alyssadai @surchs)

Authors: 2

• Alyssa Dai (@alyssadai)
• Sebastian Urchs (@surchs)

---

v0.2.1 (Mon Jan 08 2024)

🐛 Bug Fix

• [FIX] Use different reviewer token in release.yaml #268 (@alyssadai)
• [ENH] Handle multi-column attribute annotations #264 (@alyssadai)
• Bump bids-examples from 1a000d6 to eff47f1 #265 (@dependabot[bot])
• [CI] Allow auto to push on protected branch #261 (@alyssadai)
• Bump bids-examples from b6e5234 to 1a000d6 #256 (@dependabot[bot])
• [CI] Switch to parallel build config for coveralls #263 (@alyssadai)
• [MODEL] Handle phenotypic inputs with no session column in the TSV #260 (@alyssadai)
• [MNT] Stop pre-commit from pushing to PR branches #253 (@surchs)

Authors: 3

• @dependabot[bot]
• Alyssa Dai (@alyssadai)
• Sebastian Urchs (@surchs)

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v0.2.0 (Thu Dec 14 2023)

🚀 Enhancement

• [MODEL] Update data model to include longitudinal pheno data when sessions exist in TSV #250 (@alyssadai @surchs @pre-commit-ci[bot])

🐛 Bug Fix

• [CI] give auto-release permissions to launch build #255 (@surchs)
• [CI] Add Codecov to test workflow #254 (@alyssadai)
• [TST] Added a test to ensure correct labelling of phenotypic sessions #251 (@sam-gregz)
• Bump actions/setup-python from 4 to 5 #246 (@dependabot[bot])
• [CI] Update .autorc to release with release label #248 (@alyssadai @surchs @pre-commit-ci[bot])
• Bump actions/stale from 8 to 9 #245 (@dependabot[bot])
• Bump neurobagel_examples from f1b00e5 to 94282f1 #249 (@dependabot[bot])
• [MNT] Update the neurobagel examples #247 (@surchs)
• Delete .github/workflows/add_pr2project.yml #244 (@surchs)

Authors: 5

• @dependabot[bot]
• @pre-commit-ci[bot]
• @sam-gregz
• Alyssa Dai (@alyssadai)
• Sebastian Urchs (@surchs)

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v0.1.3 (Tue Dec 12 2023)

🐛 Bug Fix

• Bump actions/stale from 8 to 9 #245 (@dependabot[bot])
• Bump neurobagel_examples from f1b00e5 to 94282f1 #249 (@dependabot[bot])
• [MNT] Update the neurobagel examples #247 (@surchs)
• Delete .github/workflows/add_pr2project.yml #244 (@surchs)

Authors: 2

• @dependabot[bot]
• Sebastian Urchs (@surchs)

---

v0.1.5 (Mon Dec 11 2023)

🐛 Bug Fix

• Bump neurobagel_examples from f1b00e5 to 94282f1 #249 (@dependabot[bot])

Authors: 1

• @dependabot[bot]

---

v0.1.3 (Mon Dec 11 2023)

🐛 Bug Fix

• [MNT] Update the neurobagel examples #247 (@surchs)
• Delete .github/workflows/add_pr2project.yml #244 (@surchs)

Authors: 1

• Sebastian Urchs (@surchs)

---

v0.1.3 (Sun Dec 10 2023)

🐛 Bug Fix

• Delete .github/workflows/add_pr2project.yml #244 (@surchs)

Authors: 1

• Sebastian Urchs (@surchs)

---

v0.1.2 (Thu Dec 07 2023)

🐛 Bug Fix

• [CI] Added release workflow #243 (@rmanaem)
• [DOC] Added link to official docs #237 (@surchs)
• Bump bids-examples from e073115 to b6e5234 #232 (@dependabot[bot])
• [ENH] Change assessment tool availability heuristic to any() #234 (@alyssadai)

🏠 Internal

• [CI] Update image tag for default build + add wf to build on release #242 (@alyssadai)

Authors: 4

• @dependabot[bot]
• Alyssa Dai (@alyssadai)
• Arman Jahanpour (@rmanaem)
• Sebastian Urchs (@surchs)