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Implement component to represent "Third party re-analysed demographics information" #450

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aclayton555 opened this issue Aug 19, 2024 · 0 comments
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@aclayton555
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Follows conversations with Josh Campbell about how to submit ancestry calls information. Discussion on 2024.08.19: https://docs.google.com/document/d/1P-MgHepA_8Wb95UyzVxlyghJKHXj4Gs_oyRfN3o3E_Y/edit#bookmark=id.ojf72fh8ebj

Proposed change:

These are the results of a separate analysis that has been performed. Does it make sense to add this to existing clinical attributes (this could be misleading - e.g. which info is from the original contributor and which is from third party)?

For the data model - Easiest approach would be to have another component (e.g. Third Party Re-analysed demographics information)

For dissemination - Potential approach (especially since this is an analysis across projects)

  • Set up a separate HTAN ancestry Synapse project, with a table:
    HTAN Participant ID
    HTAN Parent Data File ID
    …other columns provided by Josh

Surface this on the portal similar to other TNPs (cBioPortal may have an existing format for this)

This ticket is to track efforts related the data model implementation.


How important is this feature?

  • 🌋 Important - it's a blocker and can't do work without it

When will use cases depending on this become relevant?

Select from the options below

  • Short-term - 2-4 weeks
  • Mid-term - 2-4 months
  • Long-term - 6 months - 1 year

Implementation checklist

  • Branch created
  • HTAN.model.csv editied and pushed
  • HTAN.model.jsonld validated and created by Github action
  • PR opened
  • PR approved
  • PR merged into main
  • New Component added to ncihtan/HTAN-data-curator (if required)
  • DCA update requested
  • DCA updated
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