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These are the results of a separate analysis that has been performed. Does it make sense to add this to existing clinical attributes (this could be misleading - e.g. which info is from the original contributor and which is from third party)?
For the data model - Easiest approach would be to have another component (e.g. Third Party Re-analysed demographics information)
For dissemination - Potential approach (especially since this is an analysis across projects)
Set up a separate HTAN ancestry Synapse project, with a table:
HTAN Participant ID
HTAN Parent Data File ID
…other columns provided by Josh
Surface this on the portal similar to other TNPs (cBioPortal may have an existing format for this)
This ticket is to track efforts related the data model implementation.
How important is this feature?
🌋 Important - it's a blocker and can't do work without it
When will use cases depending on this become relevant?
Select from the options below
Short-term - 2-4 weeks
Mid-term - 2-4 months
Long-term - 6 months - 1 year
Implementation checklist
Branch created
HTAN.model.csv editied and pushed
HTAN.model.jsonld validated and created by Github action
PR opened
PR approved
PR merged into main
New Component added to ncihtan/HTAN-data-curator (if required)
DCA update requested
DCA updated
The text was updated successfully, but these errors were encountered:
Information
Follows conversations with Josh Campbell about how to submit ancestry calls information. Discussion on 2024.08.19: https://docs.google.com/document/d/1P-MgHepA_8Wb95UyzVxlyghJKHXj4Gs_oyRfN3o3E_Y/edit#bookmark=id.ojf72fh8ebj
Proposed change:
These are the results of a separate analysis that has been performed. Does it make sense to add this to existing clinical attributes (this could be misleading - e.g. which info is from the original contributor and which is from third party)?
For the data model - Easiest approach would be to have another component (e.g. Third Party Re-analysed demographics information)
For dissemination - Potential approach (especially since this is an analysis across projects)
HTAN Participant ID
HTAN Parent Data File ID
…other columns provided by Josh
Surface this on the portal similar to other TNPs (cBioPortal may have an existing format for this)
This ticket is to track efforts related the data model implementation.
How important is this feature?
When will use cases depending on this become relevant?
Select from the options below
Implementation checklist
HTAN.model.csv
editied and pushedHTAN.model.jsonld
validated and created by Github actionmain
ncihtan/HTAN-data-curator
(if required)The text was updated successfully, but these errors were encountered: