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napari-J.json
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napari-J.json
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{
"name": "napari-J",
"display_name": "napari-J",
"visibility": "public",
"icon": "",
"categories": [],
"schema_version": "0.2.1",
"on_activate": null,
"on_deactivate": null,
"contributions": {
"commands": [
{
"id": "napari-J.Connection",
"title": "Connection",
"python_name": "napari_j.connection:Connection",
"short_title": null,
"category": null,
"icon": null,
"enablement": null
},
{
"id": "napari-J.Image",
"title": "Image",
"python_name": "napari_j.image:Image",
"short_title": null,
"category": null,
"icon": null,
"enablement": null
},
{
"id": "napari-J.Points",
"title": "Points",
"python_name": "napari_j.points:Points",
"short_title": null,
"category": null,
"icon": null,
"enablement": null
}
],
"readers": null,
"writers": null,
"widgets": [
{
"command": "napari-J.Connection",
"display_name": "Connection",
"autogenerate": false
},
{
"command": "napari-J.Image",
"display_name": "Image",
"autogenerate": false
},
{
"command": "napari-J.Points",
"display_name": "Points",
"autogenerate": false
}
],
"sample_data": null,
"themes": null,
"menus": {},
"submenus": null,
"keybindings": null,
"configuration": []
},
"package_metadata": {
"metadata_version": "2.1",
"name": "napari-J",
"version": "0.3",
"dynamic": null,
"platform": null,
"supported_platform": null,
"summary": "A plugin to exchange data with FIJI and to use FIJI image analysis from napari",
"description": "# napari-J\n\n[](https://github.com/MontpellierRessourcesImagerie/napari-J/raw/master/LICENSE)\n[](https://pypi.org/project/napari-J)\n[](https://python.org)\n[](https://github.com/MontpellierRessourcesImagerie/napari-J/actions)\n[](https://codecov.io/gh/MontpellierRessourcesImagerie/napari-J)\n\nA plugin to exchange data with FIJI and to use FIJI image analysis from napari.\nCurrent features are:\n\n * get the active image from FIJI\n * send a screenshot to FIJI\n * get a set of points from the FIJI results table\n * filter the points in napari\n * send the filtered points back to FIJI\n \nKnown problems:\n\n* Crashes on linux when the file-dialog is opened. Workaround: Set the option ``Use JFileChooser to open/save`` from the ``Edit>Options>Input/Output`` menu.\n* 03.05.2022 - Currently you need to have the range of the quality values for point between 0 and 255, in the new version they can have any range, but we are waiting for the bug in napari 0.4.15 to be fixed to release this. \n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/docs/plugins/index.html\n-->\n\n## Installation\n\nYou can install `napari-J` via [pip]:\n\n pip install napari-J\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-J\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue](https://github.com/MontpellierRessourcesImagerie/napari-J/issues) along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n[file an issue]: https://github.com/MontpellierRessourcesImagerie/napari-J/issues\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n",
"description_content_type": "text/markdown",
"keywords": null,
"home_page": "https://github.com/MontpellierRessourcesImagerie/napari-J",
"download_url": null,
"author": "Volker Baecker",
"author_email": "[email protected]",
"maintainer": null,
"maintainer_email": null,
"license": "MIT",
"classifier": [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Framework :: napari"
],
"requires_dist": [
"JPype1 (>=1.2.1)",
"matplotlib",
"imageio-ffmpeg",
"matplotlib ; extra == 'testing'",
"imageio-ffmpeg ; extra == 'testing'",
"python-matplotlib-qt5 ; extra == 'testing'",
"pytest-qt ; extra == 'testing'"
],
"requires_python": ">=3.7",
"requires_external": null,
"project_url": [
"Bug Tracker, https://github.com/MontpellierRessourcesImagerie/napari-J/issues",
"Documentation, https://github.com/MontpellierRessourcesImagerie/napari-J#README.md",
"Source Code, https://github.com/MontpellierRessourcesImagerie/napari-J",
"User Support, https://github.com/MontpellierRessourcesImagerie/napari-J/issues"
],
"provides_extra": [
"testing"
],
"provides_dist": null,
"obsoletes_dist": null
},
"npe1_shim": true
}