From 5054b4993c6baa50829fcd2d64e32665147baccb Mon Sep 17 00:00:00 2001 From: jackwadden Date: Sat, 27 Mar 2021 11:27:34 -0400 Subject: [PATCH] Fixed bug where batch_format argument in prepare_mapped_reads.py was not properly passed to generate_output_from_results resulting in batch_output forcing to True. --- bin/prepare_mapped_reads.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/prepare_mapped_reads.py b/bin/prepare_mapped_reads.py index 9e63635..909dd65 100755 --- a/bin/prepare_mapped_reads.py +++ b/bin/prepare_mapped_reads.py @@ -134,7 +134,7 @@ def iter_jobs(): # results is an iterable of dicts # each dict is a set of return values from a single read generate_output_from_results( - results, args.output, alphabet_info, args.batch_format) + results, args.output, alphabet_info, batch_format=args.batch_format) if __name__ == '__main__':