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segmentation fault when running test_pyspoa.py #12

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boegel opened this issue Jan 10, 2024 · 0 comments
Open

segmentation fault when running test_pyspoa.py #12

boegel opened this issue Jan 10, 2024 · 0 comments

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@boegel
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boegel commented Jan 10, 2024

We're trying to install pyspoa with GCC 12.2.0, on top of Python 3.10.8, with pybind11 and spoa 4.0.7, and we're seeing a hard crash when running test_pyspoa:

$ python test_pyspoa.py
Segmentation fault (core dumped)

I figured it was maybe due to a lack of memory, but that seems unlikely since I'm seeing the same problem on a system that has 250GB of RAM available...

When running through GDB, I get the following stack trace, maybe this helps:

Program received signal SIGSEGV, Segmentation fault.
0x00001555553c469e in spoa::Graph::GenerateConsensus[abi:cxx11](std::vector<unsigned int, std::allocator<unsigned int> >*, bool) ()
   from /software/pyspoa/0.2.1-GCC-12.2.0/lib/python3.10/site-packages/spoa.cpython-310-x86_64-linux-gnu.so
Missing separate debuginfos, use: yum debuginfo-install glibc-2.28-225.el8_8.6.x86_64 libxcrypt-4.1.1-6.el8.x86_64
(gdb) bt
#0  0x00001555553c469e in spoa::Graph::GenerateConsensus[abi:cxx11](std::vector<unsigned int, std::allocator<unsigned int> >*, bool) ()
   from /software/pyspoa/0.2.1-GCC-12.2.0/lib/python3.10/site-packages/spoa.cpython-310-x86_64-linux-gnu.so
#1  0x00001555553b1190 in poa (sequences=..., algorithm=<optimized out>, genmsa=<optimized out>, m=<optimized out>, n=<optimized out>, g=-8, e=-6, q=-10, c=-4, min_coverage=...)
    at /software/pybind11/2.10.3-GCCcore-12.2.0/include/pybind11/options.h:28
#2  0x00001555553c20df in pybind11::detail::argument_loader<std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object>::call_impl<pybind11::tuple, pybind11::tuple (*&)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object), 0ul, 1ul, 2ul, 3ul, 4ul, 5ul, 6ul, 7ul, 8ul, 9ul, pybind11::detail::void_type>(pybind11::tuple (*&)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object), std::integer_sequence<unsigned long, 0ul, 1ul, 2ul, 3ul, 4ul, 5ul, 6ul, 7ul, 8ul, 9ul>, pybind11::detail::void_type&&) && (f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, this=0x7fffffff0840) at /software/pybind11/2.10.3-GCCcore-12.2.0/include/pybind11/attr.h:105
#3  pybind11::detail::argument_loader<std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object>::call<pybind11::tuple, pybind11::detail::void_type, pybind11::tuple (*&)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object)>(pybind11::tuple (*&)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object)) && (f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, this=0x7fffffff0840)
    at /software/Python/3.10.8-GCCcore-12.2.0/include/python3.10/charconv.h:1413
#4  pybind11::cpp_function::initialize<pybind11::tuple (*&)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object), pybind11::tuple, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object, pybind11::name, pybind11::scope, pybind11::sibling, char [1], pybind11::arg, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v>(pybind11::tuple (*&)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object), pybind11::tuple (*)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [1], pybind11::arg const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&)::{lambda(pybind11::detail::function_call&)#3}::operator()(pybind11::detail::function_call&) const (__closure=0x0, call=...)
    at /software/Python/3.10.8-GCCcore-12.2.0/include/python3.10/alloc_traits.h:248
#5  pybind11::cpp_function::initialize<pybind11::tuple (*&)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object), pybind11::tuple, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object, pybind11::name, pybind11::scope, pybind11::sibling, char [1], pybind11::arg, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v, pybind11::arg_v>(pybind11::tuple (*&)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object), pybind11::tuple (*)(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, int, bool, int, int, int, int, int, int, pybind11::object), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [1], pybind11::arg const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&, pybind11::arg_v const&)::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call&) ()
    at /software/Python/3.10.8-GCCcore-12.2.0/include/python3.10/alloc_traits.h:223
#6  0x00001555553be022 in pybind11::cpp_function::dispatcher (self=<optimized out>, args_in=0x1555539e6260, kwargs_in=0x0) at /software/Python/3.10.8-GCCcore-12.2.0/include/python3.10/alloc_traits.h:939
#7  0x00001555550ad35d in cfunction_call (func=0x155553e47b50, args=<optimized out>, kwargs=<optimized out>) at ./Python/pycore_bitutils.h:543
#8  0x00001555550aa533 in _PyObject_MakeTpCall (tstate=0x407a50, callable=0x155553e47b50, args=0x155553b99e70, nargs=1, keywords=0x0) at ./Modules/abstract.h:215
#9  0x00001555550a3775 in _PyObject_VectorcallTstate (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, args=<optimized out>,
    callable=<optimized out>, tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:112
#10 _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:99
#11 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#12 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff0ca0, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#13 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4213
#14 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#15 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=1, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#16 0x00001555550b41a3 in _PyFunction_Vectorcall (kwnames=<optimized out>, nargsf=<optimized out>, stack=0x155553e86730, func=0x1555539b0280, func@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:332
#17 _PyObject_VectorcallTstate (kwnames=<optimized out>, nargsf=<optimized out>, args=0x155553e86730, callable=0x1555539b0280, callable@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, tstate=0x407a50,
    tstate@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:114
#18 method_vectorcall (method=<optimized out>, args=0x155553e86738, nargsf=<optimized out>, kwnames=<optimized out>) at Objects/clinic/import.c.h:53
#19 0x00001555550a191c in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=0x1555539fd300, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#20 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=0x1555539fd300) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#21 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff0fa0, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#22 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4213
#23 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#24 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=2, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#25 0x00001555550a1d89 in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=0x5eec40, callable=0x155553b465f0, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#26 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=0x5eec40, callable=0x155553b465f0) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#27 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff1200, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#28 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4198
--Type <RET> for more, q to quit, c to continue without paging--
#29 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#30 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=2, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#31 0x00001555550b4270 in _PyFunction_Vectorcall (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    stack=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, func=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:332
#32 _PyObject_VectorcallTstate (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<optimized out>, args=0x7fffffff1390,
    args@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, callable=0x155553b467a0, callable@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, tstate=0x407a50,
    tstate@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:114
#33 method_vectorcall (method=<optimized out>, args=0x1555539e6458, nargsf=<optimized out>, kwnames=<optimized out>) at Objects/clinic/import.c.h:83
#34 0x00001555550a4f58 in _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4277
#35 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#36 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=2, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#37 0x00001555550a9e4f in _PyFunction_Vectorcall (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<optimized out>, nargsf@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    stack=<optimized out>, func=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:342
#38 _PyObject_FastCallDictTstate (tstate=0x407a50, callable=0x155553b46950, args=<optimized out>, nargsf=<optimized out>, kwargs=<optimized out>) at ./Modules/abstract.h:142
#39 0x00001555550b2adf in _PyObject_Call_Prepend (tstate=0x407a50, callable=0x155553b46950, obj=<optimized out>, args=0x155553b879d0, kwargs=<optimized out>) at ./Modules/abstract.h:431
#40 0x000015555514df80 in slot_tp_call (self=self@entry=0x1555539e6320, args=args@entry=0x155553b879d0, kwds=kwds@entry=0x0) at ./Include/gcmodule.c:7494
#41 0x00001555550aa533 in _PyObject_MakeTpCall (tstate=0x407a50, callable=0x1555539e6320, args=0x155553e432d0, nargs=1, keywords=0x0) at ./Modules/abstract.h:215
#42 0x00001555550a3775 in _PyObject_VectorcallTstate (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, args=<optimized out>,
    callable=<optimized out>, tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:112
#43 _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:99
#44 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#45 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff18e0, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#46 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4213
#47 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#48 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=2, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#49 0x00001555550b4270 in _PyFunction_Vectorcall (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    stack=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, func=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:332
#50 _PyObject_VectorcallTstate (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<optimized out>, args=0x7fffffff1a70,
    args@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, callable=0x155553b55ab0, callable@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, tstate=0x407a50,
    tstate@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:114
#51 method_vectorcall (method=<optimized out>, args=0x155553b870e8, nargsf=<optimized out>, kwnames=<optimized out>) at Objects/clinic/import.c.h:83
#52 0x00001555550a4f58 in _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4277
#53 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#54 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=2, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#55 0x00001555550a9e4f in _PyFunction_Vectorcall (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<optimized out>, nargsf@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    stack=<optimized out>, func=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:342
#56 _PyObject_FastCallDictTstate (tstate=0x407a50, callable=0x155553b55990, args=<optimized out>, nargsf=<optimized out>, kwargs=<optimized out>) at ./Modules/abstract.h:142
#57 0x00001555550b2adf in _PyObject_Call_Prepend (tstate=0x407a50, callable=0x155553b55990, obj=<optimized out>, args=0x155553e24310, kwargs=<optimized out>) at ./Modules/abstract.h:431
#58 0x000015555514df80 in slot_tp_call (self=self@entry=0x1555539e63b0, args=args@entry=0x155553e24310, kwds=kwds@entry=0x0) at ./Include/gcmodule.c:7494
#59 0x00001555550aa533 in _PyObject_MakeTpCall (tstate=0x407a50, callable=0x1555539e63b0, args=0x155553e43100, nargs=1, keywords=0x0) at ./Modules/abstract.h:215
#60 0x00001555550a3775 in _PyObject_VectorcallTstate (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, args=<optimized out>,
    callable=<optimized out>, tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:112
#61 _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:99
#62 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#63 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff1fc0, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#64 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4213
#65 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#66 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=2, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#67 0x00001555550b4270 in _PyFunction_Vectorcall (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    stack=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, func=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:332
#68 _PyObject_VectorcallTstate (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<optimized out>, args=0x7fffffff2150,
    args@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, callable=0x155553b55ab0, callable@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, tstate=0x407a50,
--Type <RET> for more, q to quit, c to continue without paging--
    tstate@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:114
#69 method_vectorcall (method=<optimized out>, args=0x155553b879b8, nargsf=<optimized out>, kwnames=<optimized out>) at Objects/clinic/import.c.h:83
#70 0x00001555550a4f58 in _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4277
#71 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#72 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=2, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#73 0x00001555550a9e4f in _PyFunction_Vectorcall (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<optimized out>, nargsf@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    stack=<optimized out>, func=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:342
#74 _PyObject_FastCallDictTstate (tstate=0x407a50, callable=0x155553b55990, args=<optimized out>, nargsf=<optimized out>, kwargs=<optimized out>) at ./Modules/abstract.h:142
#75 0x00001555550b2adf in _PyObject_Call_Prepend (tstate=0x407a50, callable=0x155553b55990, obj=<optimized out>, args=0x155553e57e80, kwargs=<optimized out>) at ./Modules/abstract.h:431
#76 0x000015555514df80 in slot_tp_call (self=self@entry=0x155553e57d90, args=args@entry=0x155553e57e80, kwds=kwds@entry=0x0) at ./Include/gcmodule.c:7494
#77 0x00001555550aa533 in _PyObject_MakeTpCall (tstate=0x407a50, callable=0x155553e57d90, args=0x5edb70, nargs=1, keywords=0x0) at ./Modules/abstract.h:215
#78 0x00001555550a3775 in _PyObject_VectorcallTstate (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, args=<optimized out>,
    callable=<optimized out>, tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:112
#79 _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:99
#80 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#81 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff26a0, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#82 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4213
#83 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#84 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=2, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#85 0x00001555550a1d89 in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=0x155553e42998, callable=0x155553ba3a30, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#86 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=0x155553e42998, callable=0x155553ba3a30) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#87 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff2900, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#88 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4198
#89 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#90 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=1, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#91 0x00001555550a1d89 in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=0x563018, callable=0x1555539b0160, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#92 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=0x563018, callable=0x1555539b0160) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#93 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff2b60, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#94 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4198
#95 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#96 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=1, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#97 0x00001555550a9e4f in _PyFunction_Vectorcall (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<optimized out>, nargsf@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    stack=<optimized out>, func=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:342
#98 _PyObject_FastCallDictTstate (tstate=0x407a50, callable=0x155553ba3b50, args=<optimized out>, nargsf=<optimized out>, kwargs=<optimized out>) at ./Modules/abstract.h:142
#99 0x00001555550b2929 in _PyObject_Call_Prepend (kwargs=0x0, kwargs@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, args=0x1555553ec070,
    args@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, obj=0x155553e57dc0, obj@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, callable=0x155553ba3b50,
    callable@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, tstate=0x407a50, tstate@entry=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at ./Modules/abstract.h:431
#100 slot_tp_init (self=0x155553e57dc0, args=0x1555553ec070, kwds=0x0) at ./Include/gcmodule.c:7734
#101 0x00001555550aa7ab in type_call (type=<optimized out>, type@entry=0x5cece0, args=args@entry=0x1555553ec070, kwds=kwds@entry=0x0) at ./Python/pycore_pystate.h:731
#102 0x00001555550aa533 in _PyObject_MakeTpCall (tstate=0x407a50, callable=0x5cece0, args=0x155555411ba8, nargs=0, keywords=0x0) at ./Modules/abstract.h:215
#103 0x00001555550a3775 in _PyObject_VectorcallTstate (kwnames=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, nargsf=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, args=<optimized out>,
    callable=<optimized out>, tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:112
#104 _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>, tstate=0x407a50) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:99
#105 PyObject_Vectorcall (kwnames=0x0, nargsf=<optimized out>, args=<optimized out>, callable=<optimized out>) at /tmp/easybuild_build/Python/3.10.8/GCCcore-12.2.0/Python-3.10.8/abstract.c:123
#106 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, trace_info=0x7fffffff2f20, tstate=<optimized out>) at Objects/ceval_gil.h:5891
#107 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=<optimized out>, throwflag=<optimized out>) at Objects/ceval_gil.h:4213
#108 0x00001555550a07ee in _PyEval_EvalFrame (throwflag=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>, f=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>,
    tstate=<error reading variable: dwarf2_find_location_expression: Corrupted DWARF expression.>) at Objects/marshal.c:46
#109 _PyEval_Vector (tstate=0x407a50, con=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=0, kwnames=<optimized out>) at Objects/ceval_gil.h:5065
#110 0x0000155555116479 in PyEval_EvalCode (co=0x155553e2f050, globals=0x155553f1cf00, locals=0x155553f1cf00) at Objects/ceval_gil.h:1134
#111 0x0000155555126e93 in run_eval_code_obj (tstate=0x407a50, co=0x155553e2f050, globals=0x155553f1cf00, locals=0x155553f1cf00) at Modules/find.h:1291
#112 0x00001555551229ba in run_mod (mod=<optimized out>, filename=<optimized out>, globals=0x155553f1cf00, locals=0x155553f1cf00, flags=<optimized out>, arena=<optimized out>) at Modules/find.h:1312
#113 0x000015555501c261 in pyrun_file (fp=fp@entry=0x405370, filename=filename@entry=0x155553f0cdb0, start=start@entry=257, globals=globals@entry=0x155553f1cf00, locals=locals@entry=0x155553f1cf00, closeit=closeit@entry=1, flags=0x7fffffff3268) at Modules/find.h:1208
--Type <RET> for more, q to quit, c to continue without paging--
#114 0x000015555501ba3b in _PyRun_SimpleFileObject (fp=0x405370, filename=0x155553f0cdb0, closeit=1, flags=0x7fffffff3268) at Modules/find.h:456
#115 0x000015555501d763 in _PyRun_AnyFileObject (fp=0x405370, filename=0x155553f0cdb0, closeit=1, flags=0x7fffffff3268) at Modules/find.h:90
#116 0x00001555551332a9 in pymain_run_file_obj (skip_source_first_line=0, filename=0x155553f0cdb0, program_name=0x155553f06b80) at Objects/fileutils.c:353
#117 pymain_run_file (config=0x408b10) at Objects/fileutils.c:372
#118 pymain_run_python (exitcode=0x7fffffff3264) at Objects/fileutils.c:587
#119 Py_RunMain () at Objects/fileutils.c:666
#120 0x0000155555108e67 in Py_BytesMain (argc=<optimized out>, argv=<optimized out>) at Objects/fileutils.c:720
#121 0x0000155554010d85 in __libc_start_main () from /lib64/libc.so.6
#122 0x000000000040106e in _start ()

Could this be a problem in pyspoa itself, or do we need to look elsewhere for a bug (in spoa perhaps)?
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@boegel