From a95d5737a164e4b1fb6990cf4f225fbb5570247d Mon Sep 17 00:00:00 2001 From: Lasse Ebdrup Pedersen <6593035+cfblaeb@users.noreply.github.com> Date: Tue, 27 Feb 2024 08:56:44 +0100 Subject: [PATCH] fixed percentage unmapped in filter_reads.py (#32) percentage unmapped was always zero due. Fixed. --- lib/umi_amplicon_tools/filter_reads.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/umi_amplicon_tools/filter_reads.py b/lib/umi_amplicon_tools/filter_reads.py index de9a9502..b16e5bba 100755 --- a/lib/umi_amplicon_tools/filter_reads.py +++ b/lib/umi_amplicon_tools/filter_reads.py @@ -132,7 +132,7 @@ def filter_reads(args): logging.info("Reads found: {}".format(n_total)) unmapped_perc = 0 if n_total: - unmapped_perc = int(100.0 * unmapped_perc / n_total) + unmapped_perc = int(100.0 * n_unmapped / n_total) logging.info("Reads unmapped: {} ({}%)".format(n_unmapped, unmapped_perc))