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overview-frame.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc -->
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>Overview List (trioGen 0.5.0-beta API)</title>
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
<script type="text/javascript" src="script.js"></script>
</head>
<body>
<div class="indexHeader"><span><a href="allclasses-frame.html" target="packageFrame">All Classes</a></span></div>
<div class="indexContainer">
<h2 title="Packages">Packages</h2>
<ul title="Packages">
<li><a href="no/uib/triogen/package-frame.html" target="packageFrame">no.uib.triogen</a></li>
<li><a href="no/uib/triogen/cmd/association/package-frame.html" target="packageFrame">no.uib.triogen.cmd.association</a></li>
<li><a href="no/uib/triogen/cmd/extract/package-frame.html" target="packageFrame">no.uib.triogen.cmd.extract</a></li>
<li><a href="no/uib/triogen/cmd/ld_matrix/package-frame.html" target="packageFrame">no.uib.triogen.cmd.ld_matrix</a></li>
<li><a href="no/uib/triogen/cmd/ld_pruning/package-frame.html" target="packageFrame">no.uib.triogen.cmd.ld_pruning</a></li>
<li><a href="no/uib/triogen/cmd/ld_value/package-frame.html" target="packageFrame">no.uib.triogen.cmd.ld_value</a></li>
<li><a href="no/uib/triogen/cmd/locus/package-frame.html" target="packageFrame">no.uib.triogen.cmd.locus</a></li>
<li><a href="no/uib/triogen/cmd/mendelian_check/package-frame.html" target="packageFrame">no.uib.triogen.cmd.mendelian_check</a></li>
<li><a href="no/uib/triogen/cmd/prs_prune/package-frame.html" target="packageFrame">no.uib.triogen.cmd.prs_prune</a></li>
<li><a href="no/uib/triogen/cmd/prs_score/package-frame.html" target="packageFrame">no.uib.triogen.cmd.prs_score</a></li>
<li><a href="no/uib/triogen/cmd/prs_threshold/package-frame.html" target="packageFrame">no.uib.triogen.cmd.prs_threshold</a></li>
<li><a href="no/uib/triogen/cmd/simple_score/package-frame.html" target="packageFrame">no.uib.triogen.cmd.simple_score</a></li>
<li><a href="no/uib/triogen/cmd/variant_data/package-frame.html" target="packageFrame">no.uib.triogen.cmd.variant_data</a></li>
<li><a href="no/uib/triogen/cmd/variant_file/package-frame.html" target="packageFrame">no.uib.triogen.cmd.variant_file</a></li>
<li><a href="no/uib/triogen/cmd/vcf_to_bgen/package-frame.html" target="packageFrame">no.uib.triogen.cmd.vcf_to_bgen</a></li>
<li><a href="no/uib/triogen/export/package-frame.html" target="packageFrame">no.uib.triogen.export</a></li>
<li><a href="no/uib/triogen/io/package-frame.html" target="packageFrame">no.uib.triogen.io</a></li>
<li><a href="no/uib/triogen/io/conversion/package-frame.html" target="packageFrame">no.uib.triogen.io.conversion</a></li>
<li><a href="no/uib/triogen/io/covariates/package-frame.html" target="packageFrame">no.uib.triogen.io.covariates</a></li>
<li><a href="no/uib/triogen/io/flat/package-frame.html" target="packageFrame">no.uib.triogen.io.flat</a></li>
<li><a href="no/uib/triogen/io/flat/indexed/package-frame.html" target="packageFrame">no.uib.triogen.io.flat.indexed</a></li>
<li><a href="no/uib/triogen/io/flat/mapping/package-frame.html" target="packageFrame">no.uib.triogen.io.flat.mapping</a></li>
<li><a href="no/uib/triogen/io/flat/readers/package-frame.html" target="packageFrame">no.uib.triogen.io.flat.readers</a></li>
<li><a href="no/uib/triogen/io/genotypes/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes.bgen</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/index/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes.bgen.index</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/iterator/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes.bgen.iterator</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/reader/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes.bgen.reader</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/variant_data/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes.bgen.variant_data</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/writer/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes.bgen.writer</a></li>
<li><a href="no/uib/triogen/io/genotypes/vcf/iterators/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes.vcf.iterators</a></li>
<li><a href="no/uib/triogen/io/genotypes/vcf/reader/package-frame.html" target="packageFrame">no.uib.triogen.io.genotypes.vcf.reader</a></li>
<li><a href="no/uib/triogen/io/ld/package-frame.html" target="packageFrame">no.uib.triogen.io.ld</a></li>
<li><a href="no/uib/triogen/io/rest/package-frame.html" target="packageFrame">no.uib.triogen.io.rest</a></li>
<li><a href="no/uib/triogen/io/variant_id/package-frame.html" target="packageFrame">no.uib.triogen.io.variant_id</a></li>
<li><a href="no/uib/triogen/log/package-frame.html" target="packageFrame">no.uib.triogen.log</a></li>
<li><a href="no/uib/triogen/model/annotation/package-frame.html" target="packageFrame">no.uib.triogen.model.annotation</a></li>
<li><a href="no/uib/triogen/model/annotation/ensembl/package-frame.html" target="packageFrame">no.uib.triogen.model.annotation.ensembl</a></li>
<li><a href="no/uib/triogen/model/annotation/ld_link/package-frame.html" target="packageFrame">no.uib.triogen.model.annotation.ld_link</a></li>
<li><a href="no/uib/triogen/model/covariates/package-frame.html" target="packageFrame">no.uib.triogen.model.covariates</a></li>
<li><a href="no/uib/triogen/model/family/package-frame.html" target="packageFrame">no.uib.triogen.model.family</a></li>
<li><a href="no/uib/triogen/model/genome/package-frame.html" target="packageFrame">no.uib.triogen.model.genome</a></li>
<li><a href="no/uib/triogen/model/ld/package-frame.html" target="packageFrame">no.uib.triogen.model.ld</a></li>
<li><a href="no/uib/triogen/model/mendelian_error/package-frame.html" target="packageFrame">no.uib.triogen.model.mendelian_error</a></li>
<li><a href="no/uib/triogen/model/phenotypes/package-frame.html" target="packageFrame">no.uib.triogen.model.phenotypes</a></li>
<li><a href="no/uib/triogen/model/simple_score/package-frame.html" target="packageFrame">no.uib.triogen.model.simple_score</a></li>
<li><a href="no/uib/triogen/model/trio_genotypes/package-frame.html" target="packageFrame">no.uib.triogen.model.trio_genotypes</a></li>
<li><a href="no/uib/triogen/processing/ld/package-frame.html" target="packageFrame">no.uib.triogen.processing.ld</a></li>
<li><a href="no/uib/triogen/processing/ld/pruning/package-frame.html" target="packageFrame">no.uib.triogen.processing.ld.pruning</a></li>
<li><a href="no/uib/triogen/processing/linear_model/package-frame.html" target="packageFrame">no.uib.triogen.processing.linear_model</a></li>
<li><a href="no/uib/triogen/processing/mendelian_check/package-frame.html" target="packageFrame">no.uib.triogen.processing.mendelian_check</a></li>
<li><a href="no/uib/triogen/processing/prs/package-frame.html" target="packageFrame">no.uib.triogen.processing.prs</a></li>
<li><a href="no/uib/triogen/processing/simple_score/package-frame.html" target="packageFrame">no.uib.triogen.processing.simple_score</a></li>
<li><a href="no/uib/triogen/processing/variant_data/package-frame.html" target="packageFrame">no.uib.triogen.processing.variant_data</a></li>
<li><a href="no/uib/triogen/scripts_marc/bgen/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.bgen</a></li>
<li><a href="no/uib/triogen/scripts_marc/bolt/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.bolt</a></li>
<li><a href="no/uib/triogen/scripts_marc/cadd/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.cadd</a></li>
<li><a href="no/uib/triogen/scripts_marc/ensembl/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.ensembl</a></li>
<li><a href="no/uib/triogen/scripts_marc/ld/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.ld</a></li>
<li><a href="no/uib/triogen/scripts_marc/ld_hub/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.ld_hub</a></li>
<li><a href="no/uib/triogen/scripts_marc/lm/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.lm</a></li>
<li><a href="no/uib/triogen/scripts_marc/metal/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.metal</a></li>
<li><a href="no/uib/triogen/scripts_marc/misc/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.misc</a></li>
<li><a href="no/uib/triogen/scripts_marc/mobarun/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.mobarun</a></li>
<li><a href="no/uib/triogen/scripts_marc/phasing/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.phasing</a></li>
<li><a href="no/uib/triogen/scripts_marc/prs/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.prs</a></li>
<li><a href="no/uib/triogen/scripts_marc/vcf/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.vcf</a></li>
<li><a href="no/uib/triogen/scripts_marc/wlm/package-frame.html" target="packageFrame">no.uib.triogen.scripts_marc.wlm</a></li>
<li><a href="no/uib/triogen/utils/package-frame.html" target="packageFrame">no.uib.triogen.utils</a></li>
<li><a href="no/uib/triogen/utils/cli/package-frame.html" target="packageFrame">no.uib.triogen.utils.cli</a></li>
</ul>
</div>
<p> </p>
</body>
</html>