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allclasses-frame.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc -->
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>All Classes (trioGen 0.5.0-beta API)</title>
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
<script type="text/javascript" src="script.js"></script>
</head>
<body>
<h1 class="bar">All Classes</h1>
<div class="indexContainer">
<ul>
<li><a href="no/uib/triogen/scripts_marc/metal/AddRsidToMetal.html" title="class in no.uib.triogen.scripts_marc.metal" target="classFrame">AddRsidToMetal</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/reader/BgenFileReader.html" title="class in no.uib.triogen.io.genotypes.bgen.reader" target="classFrame">BgenFileReader</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/index/BgenIndex.html" title="class in no.uib.triogen.io.genotypes.bgen.index" target="classFrame">BgenIndex</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/BgenUtils.html" title="class in no.uib.triogen.io.genotypes.bgen" target="classFrame">BgenUtils</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/variant_data/BgenVariantTrioData.html" title="class in no.uib.triogen.io.genotypes.bgen.variant_data" target="classFrame">BgenVariantTrioData</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/writer/BgenWriter.html" title="class in no.uib.triogen.io.genotypes.bgen.writer" target="classFrame">BgenWriter</a></li>
<li><a href="no/uib/triogen/scripts_marc/bolt/BoltCleanUp.html" title="class in no.uib.triogen.scripts_marc.bolt" target="classFrame">BoltCleanUp</a></li>
<li><a href="no/uib/triogen/scripts_marc/mobarun/BoltCleanUp.html" title="class in no.uib.triogen.scripts_marc.mobarun" target="classFrame">BoltCleanUp</a></li>
<li><a href="no/uib/triogen/scripts_marc/metal/BoltToMetal.html" title="class in no.uib.triogen.scripts_marc.metal" target="classFrame">BoltToMetal</a></li>
<li><a href="no/uib/triogen/scripts_marc/mobarun/BoltToTargetFile.html" title="class in no.uib.triogen.scripts_marc.mobarun" target="classFrame">BoltToTargetFile</a></li>
<li><a href="no/uib/triogen/scripts_marc/cadd/CaddToIndexedGz.html" title="class in no.uib.triogen.scripts_marc.cadd" target="classFrame">CaddToIndexedGz</a></li>
<li><a href="no/uib/triogen/scripts_marc/cadd/CaddToRaf.html" title="class in no.uib.triogen.scripts_marc.cadd" target="classFrame">CaddToRaf</a></li>
<li><a href="no/uib/triogen/scripts_marc/cadd/CaddToSql.html" title="class in no.uib.triogen.scripts_marc.cadd" target="classFrame">CaddToSql</a></li>
<li><a href="no/uib/triogen/model/family/ChildToParentMap.html" title="class in no.uib.triogen.model.family" target="classFrame">ChildToParentMap</a></li>
<li><a href="no/uib/triogen/model/genome/ChromosomeUtils.html" title="class in no.uib.triogen.model.genome" target="classFrame">ChromosomeUtils</a></li>
<li><a href="no/uib/triogen/scripts_marc/metal/CleanMeta.html" title="class in no.uib.triogen.scripts_marc.metal" target="classFrame">CleanMeta</a></li>
<li><a href="no/uib/triogen/scripts_marc/metal/CleanPwMeta.html" title="class in no.uib.triogen.scripts_marc.metal" target="classFrame">CleanPwMeta</a></li>
<li><a href="no/uib/triogen/utils/cli/CliOption.html" title="interface in no.uib.triogen.utils.cli" target="classFrame"><span class="interfaceName">CliOption</span></a></li>
<li><a href="no/uib/triogen/utils/cli/CliUtils.html" title="class in no.uib.triogen.utils.cli" target="classFrame">CliUtils</a></li>
<li><a href="no/uib/triogen/utils/CompressionUtils.html" title="class in no.uib.triogen.utils" target="classFrame">CompressionUtils</a></li>
<li><a href="no/uib/triogen/scripts_marc/ld/ComputeTargetedLD.html" title="class in no.uib.triogen.scripts_marc.ld" target="classFrame">ComputeTargetedLD</a></li>
<li><a href="no/uib/triogen/model/covariates/CovariatesHandler.html" title="class in no.uib.triogen.model.covariates" target="classFrame">CovariatesHandler</a></li>
<li><a href="no/uib/triogen/scripts_marc/ld/DebugLd.html" title="class in no.uib.triogen.scripts_marc.ld" target="classFrame">DebugLd</a></li>
<li><a href="no/uib/triogen/model/annotation/ensembl/EnsemblAPI.html" title="class in no.uib.triogen.model.annotation.ensembl" target="classFrame">EnsemblAPI</a></li>
<li><a href="no/uib/triogen/cmd/extract/Extract.html" title="class in no.uib.triogen.cmd.extract" target="classFrame">Extract</a></li>
<li><a href="no/uib/triogen/scripts_marc/bolt/ExtractBolt.html" title="class in no.uib.triogen.scripts_marc.bolt" target="classFrame">ExtractBolt</a></li>
<li><a href="no/uib/triogen/scripts_marc/vcf/ExtractFromVcf.html" title="class in no.uib.triogen.scripts_marc.vcf" target="classFrame">ExtractFromVcf</a></li>
<li><a href="no/uib/triogen/scripts_marc/ld/ExtractLd.html" title="class in no.uib.triogen.scripts_marc.ld" target="classFrame">ExtractLd</a></li>
<li><a href="no/uib/triogen/scripts_marc/misc/ExtractNs.html" title="class in no.uib.triogen.scripts_marc.misc" target="classFrame">ExtractNs</a></li>
<li><a href="no/uib/triogen/cmd/extract/ExtractOptions.html" title="enum in no.uib.triogen.cmd.extract" target="classFrame">ExtractOptions</a></li>
<li><a href="no/uib/triogen/cmd/extract/ExtractOptionsBean.html" title="class in no.uib.triogen.cmd.extract" target="classFrame">ExtractOptionsBean</a></li>
<li><a href="no/uib/triogen/model/annotation/ensembl/GeneCoordinates.html" title="class in no.uib.triogen.model.annotation.ensembl" target="classFrame">GeneCoordinates</a></li>
<li><a href="no/uib/triogen/scripts_marc/ensembl/GeneCoordinates.html" title="class in no.uib.triogen.scripts_marc.ensembl" target="classFrame">GeneCoordinates</a></li>
<li><a href="no/uib/triogen/scripts_marc/misc/GetTargetHits.html" title="class in no.uib.triogen.scripts_marc.misc" target="classFrame">GetTargetHits</a></li>
<li><a href="no/uib/triogen/io/flat/indexed/IndexedGzCoordinates.html" title="class in no.uib.triogen.io.flat.indexed" target="classFrame">IndexedGzCoordinates</a></li>
<li><a href="no/uib/triogen/io/flat/indexed/IndexedGzReader.html" title="class in no.uib.triogen.io.flat.indexed" target="classFrame">IndexedGzReader</a></li>
<li><a href="no/uib/triogen/io/flat/indexed/IndexedGzWriter.html" title="class in no.uib.triogen.io.flat.indexed" target="classFrame">IndexedGzWriter</a></li>
<li><a href="no/uib/triogen/io/genotypes/InheritanceUtils.html" title="class in no.uib.triogen.io.genotypes" target="classFrame">InheritanceUtils</a></li>
<li><a href="no/uib/triogen/io/IoUtils.html" title="class in no.uib.triogen.io" target="classFrame">IoUtils</a></li>
<li><a href="no/uib/triogen/cmd/ld_matrix/LdMatrix.html" title="class in no.uib.triogen.cmd.ld_matrix" target="classFrame">LdMatrix</a></li>
<li><a href="no/uib/triogen/processing/ld/LdMatrixComputer.html" title="class in no.uib.triogen.processing.ld" target="classFrame">LdMatrixComputer</a></li>
<li><a href="no/uib/triogen/processing/ld/LdMatrixComputerRunnable.html" title="class in no.uib.triogen.processing.ld" target="classFrame">LdMatrixComputerRunnable</a></li>
<li><a href="no/uib/triogen/cmd/ld_matrix/LdMatrixOptions.html" title="enum in no.uib.triogen.cmd.ld_matrix" target="classFrame">LdMatrixOptions</a></li>
<li><a href="no/uib/triogen/cmd/ld_matrix/LdMatrixOptionsBean.html" title="class in no.uib.triogen.cmd.ld_matrix" target="classFrame">LdMatrixOptionsBean</a></li>
<li><a href="no/uib/triogen/io/ld/LdMatrixReader.html" title="class in no.uib.triogen.io.ld" target="classFrame">LdMatrixReader</a></li>
<li><a href="no/uib/triogen/io/ld/LdMatrixUtils.html" title="class in no.uib.triogen.io.ld" target="classFrame">LdMatrixUtils</a></li>
<li><a href="no/uib/triogen/io/ld/LdMatrixWriter.html" title="class in no.uib.triogen.io.ld" target="classFrame">LdMatrixWriter</a></li>
<li><a href="no/uib/triogen/model/annotation/ld_link/LDproxy.html" title="class in no.uib.triogen.model.annotation.ld_link" target="classFrame">LDproxy</a></li>
<li><a href="no/uib/triogen/cmd/ld_pruning/LdPruning.html" title="class in no.uib.triogen.cmd.ld_pruning" target="classFrame">LdPruning</a></li>
<li><a href="no/uib/triogen/cmd/ld_pruning/LdPruningOptions.html" title="enum in no.uib.triogen.cmd.ld_pruning" target="classFrame">LdPruningOptions</a></li>
<li><a href="no/uib/triogen/cmd/ld_pruning/LdPruningOptionsBean.html" title="class in no.uib.triogen.cmd.ld_pruning" target="classFrame">LdPruningOptionsBean</a></li>
<li><a href="no/uib/triogen/scripts_marc/ld/LdTest.html" title="class in no.uib.triogen.scripts_marc.ld" target="classFrame">LdTest</a></li>
<li><a href="no/uib/triogen/cmd/ld_value/LdValue.html" title="class in no.uib.triogen.cmd.ld_value" target="classFrame">LdValue</a></li>
<li><a href="no/uib/triogen/cmd/ld_value/LdValueOptions.html" title="enum in no.uib.triogen.cmd.ld_value" target="classFrame">LdValueOptions</a></li>
<li><a href="no/uib/triogen/cmd/ld_value/LdValueOptionsBean.html" title="class in no.uib.triogen.cmd.ld_value" target="classFrame">LdValueOptionsBean</a></li>
<li><a href="no/uib/triogen/cmd/association/LinearModel.html" title="class in no.uib.triogen.cmd.association" target="classFrame">LinearModel</a></li>
<li><a href="no/uib/triogen/processing/linear_model/LinearModelComputer.html" title="class in no.uib.triogen.processing.linear_model" target="classFrame">LinearModelComputer</a></li>
<li><a href="no/uib/triogen/cmd/association/LinearModelOptions.html" title="enum in no.uib.triogen.cmd.association" target="classFrame">LinearModelOptions</a></li>
<li><a href="no/uib/triogen/cmd/association/LinearModelOptionsBean.html" title="class in no.uib.triogen.cmd.association" target="classFrame">LinearModelOptionsBean</a></li>
<li><a href="no/uib/triogen/processing/linear_model/LinearModelRunnable.html" title="class in no.uib.triogen.processing.linear_model" target="classFrame">LinearModelRunnable</a></li>
<li><a href="no/uib/triogen/cmd/locus/LocusZoom.html" title="class in no.uib.triogen.cmd.locus" target="classFrame">LocusZoom</a></li>
<li><a href="no/uib/triogen/export/LocusZoomExtractor.html" title="class in no.uib.triogen.export" target="classFrame">LocusZoomExtractor</a></li>
<li><a href="no/uib/triogen/cmd/locus/LocusZoomOptions.html" title="enum in no.uib.triogen.cmd.locus" target="classFrame">LocusZoomOptions</a></li>
<li><a href="no/uib/triogen/cmd/locus/LocusZoomOptionsBean.html" title="class in no.uib.triogen.cmd.locus" target="classFrame">LocusZoomOptionsBean</a></li>
<li><a href="no/uib/triogen/io/flat/mapping/MemoryMappedFile.html" title="class in no.uib.triogen.io.flat.mapping" target="classFrame">MemoryMappedFile</a></li>
<li><a href="no/uib/triogen/cmd/mendelian_check/MendelianCheck.html" title="class in no.uib.triogen.cmd.mendelian_check" target="classFrame">MendelianCheck</a></li>
<li><a href="no/uib/triogen/processing/mendelian_check/MendelianCheckComputer.html" title="class in no.uib.triogen.processing.mendelian_check" target="classFrame">MendelianCheckComputer</a></li>
<li><a href="no/uib/triogen/cmd/mendelian_check/MendelianCheckOptions.html" title="enum in no.uib.triogen.cmd.mendelian_check" target="classFrame">MendelianCheckOptions</a></li>
<li><a href="no/uib/triogen/cmd/mendelian_check/MendelianCheckOptionsBean.html" title="class in no.uib.triogen.cmd.mendelian_check" target="classFrame">MendelianCheckOptionsBean</a></li>
<li><a href="no/uib/triogen/processing/mendelian_check/MendelianCheckRunnable.html" title="class in no.uib.triogen.processing.mendelian_check" target="classFrame">MendelianCheckRunnable</a></li>
<li><a href="no/uib/triogen/model/mendelian_error/MendelianErrorEstimator.html" title="class in no.uib.triogen.model.mendelian_error" target="classFrame">MendelianErrorEstimator</a></li>
<li><a href="no/uib/triogen/scripts_marc/bolt/MergeBolt.html" title="class in no.uib.triogen.scripts_marc.bolt" target="classFrame">MergeBolt</a></li>
<li><a href="no/uib/triogen/model/trio_genotypes/Model.html" title="enum in no.uib.triogen.model.trio_genotypes" target="classFrame">Model</a></li>
<li><a href="no/uib/triogen/processing/ld/P0Cache.html" title="class in no.uib.triogen.processing.ld" target="classFrame">P0Cache</a></li>
<li><a href="no/uib/triogen/model/phenotypes/PhenotypesHandler.html" title="class in no.uib.triogen.model.phenotypes" target="classFrame">PhenotypesHandler</a></li>
<li><a href="no/uib/triogen/model/annotation/ProxyCoordinates.html" title="class in no.uib.triogen.model.annotation" target="classFrame">ProxyCoordinates</a></li>
<li><a href="no/uib/triogen/processing/prs/PrsComputer.html" title="class in no.uib.triogen.processing.prs" target="classFrame">PrsComputer</a></li>
<li><a href="no/uib/triogen/cmd/prs_prune/PrsPrune.html" title="class in no.uib.triogen.cmd.prs_prune" target="classFrame">PrsPrune</a></li>
<li><a href="no/uib/triogen/cmd/prs_prune/PrsPruneOptions.html" title="enum in no.uib.triogen.cmd.prs_prune" target="classFrame">PrsPruneOptions</a></li>
<li><a href="no/uib/triogen/cmd/prs_prune/PrsPruneOptionsBean.html" title="class in no.uib.triogen.cmd.prs_prune" target="classFrame">PrsPruneOptionsBean</a></li>
<li><a href="no/uib/triogen/processing/prs/PrsPruner.html" title="class in no.uib.triogen.processing.prs" target="classFrame">PrsPruner</a></li>
<li><a href="no/uib/triogen/cmd/prs_score/PrsScore.html" title="class in no.uib.triogen.cmd.prs_score" target="classFrame">PrsScore</a></li>
<li><a href="no/uib/triogen/cmd/prs_score/PrsScoreOptions.html" title="enum in no.uib.triogen.cmd.prs_score" target="classFrame">PrsScoreOptions</a></li>
<li><a href="no/uib/triogen/cmd/prs_score/PrsScoreOptionsBean.html" title="class in no.uib.triogen.cmd.prs_score" target="classFrame">PrsScoreOptionsBean</a></li>
<li><a href="no/uib/triogen/processing/prs/PrsScorer.html" title="class in no.uib.triogen.processing.prs" target="classFrame">PrsScorer</a></li>
<li><a href="no/uib/triogen/cmd/prs_threshold/PrsThreshold.html" title="class in no.uib.triogen.cmd.prs_threshold" target="classFrame">PrsThreshold</a></li>
<li><a href="no/uib/triogen/processing/prs/PrsThresholder.html" title="class in no.uib.triogen.processing.prs" target="classFrame">PrsThresholder</a></li>
<li><a href="no/uib/triogen/cmd/prs_threshold/PrsThresholdOptions.html" title="enum in no.uib.triogen.cmd.prs_threshold" target="classFrame">PrsThresholdOptions</a></li>
<li><a href="no/uib/triogen/cmd/prs_threshold/PrsThresholdOptionsBean.html" title="class in no.uib.triogen.cmd.prs_threshold" target="classFrame">PrsThresholdOptionsBean</a></li>
<li><a href="no/uib/triogen/processing/prs/PrsUtils.html" title="class in no.uib.triogen.processing.prs" target="classFrame">PrsUtils</a></li>
<li><a href="no/uib/triogen/processing/prs/PrsUtils.ScoringMode.html" title="enum in no.uib.triogen.processing.prs" target="classFrame">PrsUtils.ScoringMode</a></li>
<li><a href="no/uib/triogen/scripts_marc/ensembl/QueryEnsembl.html" title="class in no.uib.triogen.scripts_marc.ensembl" target="classFrame">QueryEnsembl</a></li>
<li><a href="no/uib/triogen/model/ld/R2.html" title="class in no.uib.triogen.model.ld" target="classFrame">R2</a></li>
<li><a href="no/uib/triogen/scripts_marc/phasing/ReformatGeneticMaps.html" title="class in no.uib.triogen.scripts_marc.phasing" target="classFrame">ReformatGeneticMaps</a></li>
<li><a href="no/uib/triogen/processing/linear_model/RegressionResult.html" title="class in no.uib.triogen.processing.linear_model" target="classFrame">RegressionResult</a></li>
<li><a href="no/uib/triogen/io/rest/Rest.html" title="class in no.uib.triogen.io.rest" target="classFrame">Rest</a></li>
<li><a href="no/uib/triogen/log/SimpleCliLogger.html" title="class in no.uib.triogen.log" target="classFrame">SimpleCliLogger</a></li>
<li><a href="no/uib/triogen/io/flat/SimpleFileReader.html" title="interface in no.uib.triogen.io.flat" target="classFrame"><span class="interfaceName">SimpleFileReader</span></a></li>
<li><a href="no/uib/triogen/io/flat/SimpleFileWriter.html" title="class in no.uib.triogen.io.flat" target="classFrame">SimpleFileWriter</a></li>
<li><a href="no/uib/triogen/io/flat/readers/SimpleGzReader.html" title="class in no.uib.triogen.io.flat.readers" target="classFrame">SimpleGzReader</a></li>
<li><a href="no/uib/triogen/processing/ld/pruning/SimpleLdPruner.html" title="class in no.uib.triogen.processing.ld.pruning" target="classFrame">SimpleLdPruner</a></li>
<li><a href="no/uib/triogen/cmd/simple_score/SimpleScore.html" title="class in no.uib.triogen.cmd.simple_score" target="classFrame">SimpleScore</a></li>
<li><a href="no/uib/triogen/processing/simple_score/SimpleScoreComputer.html" title="class in no.uib.triogen.processing.simple_score" target="classFrame">SimpleScoreComputer</a></li>
<li><a href="no/uib/triogen/cmd/simple_score/SimpleScoreOptions.html" title="enum in no.uib.triogen.cmd.simple_score" target="classFrame">SimpleScoreOptions</a></li>
<li><a href="no/uib/triogen/cmd/simple_score/SimpleScoreOptionsBean.html" title="class in no.uib.triogen.cmd.simple_score" target="classFrame">SimpleScoreOptionsBean</a></li>
<li><a href="no/uib/triogen/utils/SimpleSemaphore.html" title="class in no.uib.triogen.utils" target="classFrame">SimpleSemaphore</a></li>
<li><a href="no/uib/triogen/io/flat/readers/SimpleTextReader.html" title="class in no.uib.triogen.io.flat.readers" target="classFrame">SimpleTextReader</a></li>
<li><a href="no/uib/triogen/utils/SimpleTimeSemaphore.html" title="class in no.uib.triogen.utils" target="classFrame">SimpleTimeSemaphore</a></li>
<li><a href="no/uib/triogen/io/covariates/SpecificCovariatesFile.html" title="class in no.uib.triogen.io.covariates" target="classFrame">SpecificCovariatesFile</a></li>
<li><a href="no/uib/triogen/utils/TempByteArray.html" title="class in no.uib.triogen.utils" target="classFrame">TempByteArray</a></li>
<li><a href="no/uib/triogen/scripts_marc/bgen/TestBgen.html" title="class in no.uib.triogen.scripts_marc.bgen" target="classFrame">TestBgen</a></li>
<li><a href="no/uib/triogen/scripts_marc/bgen/TestBgenConversion.html" title="class in no.uib.triogen.scripts_marc.bgen" target="classFrame">TestBgenConversion</a></li>
<li><a href="no/uib/triogen/scripts_marc/lm/TestLm.html" title="class in no.uib.triogen.scripts_marc.lm" target="classFrame">TestLm</a></li>
<li><a href="no/uib/triogen/scripts_marc/prs/TestPruning.html" title="class in no.uib.triogen.scripts_marc.prs" target="classFrame">TestPruning</a></li>
<li><a href="no/uib/triogen/TrioGen.html" title="class in no.uib.triogen" target="classFrame">TrioGen</a></li>
<li><a href="no/uib/triogen/scripts_marc/ld_hub/TriogenToLdhub.html" title="class in no.uib.triogen.scripts_marc.ld_hub" target="classFrame">TriogenToLdhub</a></li>
<li><a href="no/uib/triogen/scripts_marc/mobarun/TrioGenToTargetFile.html" title="class in no.uib.triogen.scripts_marc.mobarun" target="classFrame">TrioGenToTargetFile</a></li>
<li><a href="no/uib/triogen/utils/Utils.html" title="class in no.uib.triogen.utils" target="classFrame">Utils</a></li>
<li><a href="no/uib/triogen/model/annotation/ensembl/VariantCoordinates.html" title="class in no.uib.triogen.model.annotation.ensembl" target="classFrame">VariantCoordinates</a></li>
<li><a href="no/uib/triogen/cmd/variant_data/VariantData.html" title="class in no.uib.triogen.cmd.variant_data" target="classFrame">VariantData</a></li>
<li><a href="no/uib/triogen/processing/variant_data/VariantDataExtractor.html" title="class in no.uib.triogen.processing.variant_data" target="classFrame">VariantDataExtractor</a></li>
<li><a href="no/uib/triogen/cmd/variant_data/VariantDataOptions.html" title="enum in no.uib.triogen.cmd.variant_data" target="classFrame">VariantDataOptions</a></li>
<li><a href="no/uib/triogen/cmd/variant_data/VariantDataOptionsBean.html" title="class in no.uib.triogen.cmd.variant_data" target="classFrame">VariantDataOptionsBean</a></li>
<li><a href="no/uib/triogen/cmd/variant_file/VariantFile.html" title="class in no.uib.triogen.cmd.variant_file" target="classFrame">VariantFile</a></li>
<li><a href="no/uib/triogen/cmd/variant_file/VariantFileOptions.html" title="enum in no.uib.triogen.cmd.variant_file" target="classFrame">VariantFileOptions</a></li>
<li><a href="no/uib/triogen/cmd/variant_file/VariantFileOptionsBean.html" title="class in no.uib.triogen.cmd.variant_file" target="classFrame">VariantFileOptionsBean</a></li>
<li><a href="no/uib/triogen/io/variant_id/VariantIdFile.html" title="class in no.uib.triogen.io.variant_id" target="classFrame">VariantIdFile</a></li>
<li><a href="no/uib/triogen/model/trio_genotypes/VariantIndex.html" title="class in no.uib.triogen.model.trio_genotypes" target="classFrame">VariantIndex</a></li>
<li><a href="no/uib/triogen/model/genome/VariantInformation.html" title="class in no.uib.triogen.model.genome" target="classFrame">VariantInformation</a></li>
<li><a href="no/uib/triogen/io/genotypes/bgen/iterator/VariantIterator.html" title="class in no.uib.triogen.io.genotypes.bgen.iterator" target="classFrame">VariantIterator</a></li>
<li><a href="no/uib/triogen/model/trio_genotypes/VariantList.html" title="class in no.uib.triogen.model.trio_genotypes" target="classFrame">VariantList</a></li>
<li><a href="no/uib/triogen/io/variant_id/VariantListToFile.html" title="class in no.uib.triogen.io.variant_id" target="classFrame">VariantListToFile</a></li>
<li><a href="no/uib/triogen/model/simple_score/VariantWeightList.html" title="class in no.uib.triogen.model.simple_score" target="classFrame">VariantWeightList</a></li>
<li><a href="no/uib/triogen/io/genotypes/vcf/iterators/VcfIterator.html" title="class in no.uib.triogen.io.genotypes.vcf.iterators" target="classFrame">VcfIterator</a></li>
<li><a href="no/uib/triogen/cmd/vcf_to_bgen/VcfToBgen.html" title="class in no.uib.triogen.cmd.vcf_to_bgen" target="classFrame">VcfToBgen</a></li>
<li><a href="no/uib/triogen/io/conversion/VcfToBgenConverter.html" title="class in no.uib.triogen.io.conversion" target="classFrame">VcfToBgenConverter</a></li>
<li><a href="no/uib/triogen/cmd/vcf_to_bgen/VcfToBgenOptions.html" title="enum in no.uib.triogen.cmd.vcf_to_bgen" target="classFrame">VcfToBgenOptions</a></li>
<li><a href="no/uib/triogen/cmd/vcf_to_bgen/VcfToBgenOptionsBean.html" title="class in no.uib.triogen.cmd.vcf_to_bgen" target="classFrame">VcfToBgenOptionsBean</a></li>
<li><a href="no/uib/triogen/io/genotypes/vcf/reader/VcfVariant.html" title="class in no.uib.triogen.io.genotypes.vcf.reader" target="classFrame">VcfVariant</a></li>
<li><a href="no/uib/triogen/utils/Waiter.html" title="class in no.uib.triogen.utils" target="classFrame">Waiter</a></li>
<li><a href="no/uib/triogen/scripts_marc/wlm/WLM.html" title="class in no.uib.triogen.scripts_marc.wlm" target="classFrame">WLM</a></li>
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