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Breast cancer exploration in EpiGraphDB

This is a development repo of the work presented in the article "Integrating Mendelian randomization and literature-mined evidence for breast cancer risk factors".

Repo summary

├── README.md
├── project_code/
│   ├── 01_MR_related/
│   │   ├── MR_codebase_summary.md # see this file for MR-related analysis documentation
│   │   ├── results/
│   │   └── scripts/
│   ├── 02_literature_related/
│   │   ├── Literature_codebase_summary.md # see this file for literature analysis documentation
│   │   ├── results/
│   │   └── scripts/
├── graph_testing_legacy # python-based initial exploration of EpiGraphDB (not a part of the article results)
└── study_overview.png

See posters related to this work in the Wiki tab of this repo:

  • Poster about the early stages of this work presented at Mendelian Randomization Conference 2021.
  • Poster based on the pre-print v1 presented at International Genetic Epidemiology Society meeting 2022 (Paris).

Project overview