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terminate called after throwing an instance of 'std::length_error #208

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fka21 opened this issue Mar 22, 2024 · 0 comments
Open

terminate called after throwing an instance of 'std::length_error #208

fka21 opened this issue Mar 22, 2024 · 0 comments

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@fka21
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fka21 commented Mar 22, 2024

Hello!

I have encountered an error while running nucmer (most recent version) recently:

Here is the command used:
nucmer -t 20 -p nucmer.hifiasm_hic_hap2_scaffolds_final_to_hifiasm_hic_hap1_scaffolds_final.l100.c500/nucmer.hifiasm_hic_hap2_scaffolds_final_to_hifiasm_hic_hap1_scaffolds_final.l100.c500 --maxmatch -l 100 -c 500 sSmed_assembly/07_Scaffolding/bwa_yahs/3_scaffolding/hifiasm_hic_hap1_scaffolds_final.fa sSmed_assembly/07_Scaffolding/bwa_yahs/3_scaffolding/hifiasm_hic_hap2_scaffolds_final.fa

For a while it is running and afterwards I get the following error message:
terminate called after throwing an instance of "std::length_error" what(): vector::_M_fill_insert

Interestingly the same command ran without errors on the same assemblies prior to scaffolding.

Any help would be greatly appreciated.

Cheers,
Ferenc

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