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I use nucmer to compare the genomes of two corns, but no matter how much I set “-t”, it can only call ten threads.
Below is my code, I tried both, nucmer --maxmatch -c 500 -b 500 -l 200 -g 1000 A.fa B.fa --delta=./A-B.delta --threads=60 nucmer -t 60 --maxmatch -c 500 -b 500 -l 200 -g 1000 A.fa B.fa --delta=./A-B.delta
The text was updated successfully, but these errors were encountered:
How many sequences are in the input fasta files? Parallelism at this point is only "coarse grain", done at the level of sequences.
Thank you, I understand, my sequence has only ten chromosomes, so only ten cores are called.
So does this mean that I can't complete my comparison faster by using more cores?
I use nucmer to compare the genomes of two corns, but no matter how much I set “-t”, it can only call ten threads.
Below is my code, I tried both,
nucmer --maxmatch -c 500 -b 500 -l 200 -g 1000 A.fa B.fa --delta=./A-B.delta --threads=60
nucmer -t 60 --maxmatch -c 500 -b 500 -l 200 -g 1000 A.fa B.fa --delta=./A-B.delta
The text was updated successfully, but these errors were encountered: