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SomaticCombineMutect2Vcf force sample name override header #976

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gongyixiao opened this issue Oct 3, 2022 · 0 comments
Open

SomaticCombineMutect2Vcf force sample name override header #976

gongyixiao opened this issue Oct 3, 2022 · 0 comments
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@gongyixiao
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enhancement New feature or request
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2.0

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@gongyixiao
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When sample name is different in the header, SomaticCombineMutect2Vcf 's bcftools concat will give the following error:

Error: subset called for sample that does not exist in header: "some sample name". Use "--force-samples" to ignore this error.

I think we can add --force-samples for all, since i don't see the value of this check in TEMPO so far. No harm to do I think.
@gongyixiao gongyixiao added the enhancement New feature or request label Oct 3, 2022
@gongyixiao gongyixiao added this to the 2.0 milestone Oct 3, 2022
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