Merge pull request #990 from mskcc/bugfix/lohhla_readtable_bug

Hotfix/1.4.4

Author: anoronh4

conf/containers.config

@@ -61,7 +61,7 @@
     container = "sachet/polysolver:v4"
   }
   withName:RunLOHHLA {
-    container = "cmopipeline/lohhla:1.1.6"
+    container = "cmopipeline/lohhla:1.1.7"
   } 
   withName:RunMutationSignatures {
     container = "cmopipeline/temposig:0.2.3"

containers/lohhla/Dockerfile

@@ -1,16 +1,18 @@
 FROM cmopipeline/lohhla:1.1.3
 
 LABEL authors="Yixiao Gong ([email protected])" \
-      version.image="1.1.6" \
-      version.lohhla="1.1.6" \
-      source.lohhla="https://github.com/mskcc/lohhla/releases/tag/1.1.6"
+      version.image="1.1.7" \
+      version.lohhla="1.1.7" \
+      source.lohhla="https://github.com/mskcc/lohhla/releases/tag/1.1.7"
+
+ENV LOHHLA_VERSION 1.1.7
 
 RUN R -e "install.packages(c('plyr'), repos = 'http://cran.r-project.org')"
 
 WORKDIR /
 
 RUN rm -rf /lohhla
 
-RUN wget https://github.com/mskcc/lohhla/archive/1.1.6.zip && unzip 1.1.6.zip && mv /lohhla-1.1.6 /lohhla
+RUN wget https://github.com/mskcc/lohhla/archive/${LOHHLA_VERSION}.zip && unzip ${LOHHLA_VERSION}.zip && mv /lohhla-${LOHHLA_VERSION} /lohhla
 
 WORKDIR /lohhla