From 9fd1809bc890b9428b31140d5b2cdb092e53f2e4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E2=80=9CAyesha?= Date: Mon, 4 Mar 2024 11:38:40 +0100 Subject: [PATCH] path to project folder fixed in params.json --- routes/apps/irfinder.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/routes/apps/irfinder.py b/routes/apps/irfinder.py index e4bdd149..b4bd034f 100644 --- a/routes/apps/irfinder.py +++ b/routes/apps/irfinder.py @@ -306,7 +306,7 @@ def _generate_submission_file(rows, email,group,folder,md5sums,project_title,org nf={ "r2d2":{ - "project_folder" : os.path.join(paths["r2d2"]["run_data"], project_folder, "/") , + "project_folder" : os.path.join(paths["r2d2"]["run_data"], project_folder) , "samplestable":os.path.join(paths["r2d2"]["code"], project_folder, "scripts.JBoucas" ,"sample_sheet.xlsx"), "fastqc_raw_data" : os.path.join(paths["r2d2"]["run_data"], project_folder, "raw_data/") , "IRquant_raw_data" : os.path.join(paths["r2d2"]["run_data"], project_folder, "raw_data/"), @@ -320,7 +320,7 @@ def _generate_submission_file(rows, email,group,folder,md5sums,project_title,org }, "raven":{ - "project_folder" : os.path.join(paths["raven"]["run_data"], project_folder, "/") , + "project_folder" : os.path.join(paths["raven"]["run_data"], project_folder) , "samplestable":os.path.join(paths["raven"]["code"], project_folder, "scripts.flaski" ,"sample_sheet.xlsx"), "fastqc_raw_data" : os.path.join(paths["raven"]["run_data"], project_folder, "raw_data/") , "IRquant_raw_data" : os.path.join(paths["raven"]["run_data"], project_folder, "raw_data/"), @@ -333,7 +333,7 @@ def _generate_submission_file(rows, email,group,folder,md5sums,project_title,org "featurecounts" : "" }, "studio":{ - "project_folder" : os.path.join(paths["studio"]["run_data"], project_folder, "/") , + "project_folder" : os.path.join(paths["studio"]["run_data"], project_folder) , "samplestable":os.path.join(paths["studio"]["code"], project_folder, "scripts.flaski" ,"sample_sheet.xlsx"), "fastqc_raw_data" : os.path.join(paths["studio"]["run_data"], project_folder, "raw_data/") , "IRquant_raw_data" : os.path.join(paths["studio"]["run_data"], project_folder, "raw_data/"),