Error: Cannot call bwa on the file ERR4563329.fastq.gz

[xiangjianmao]

Error: bwa failed
Error: Cannot call bwa on the file ERR4563329.fastq.gz

[Anto007]

I believe indexing your database fasta via bwa will make this error disappear

[hjruscheweyh]

Dear @xiangjianmao

The database is downloaded as an indexed bwa database already. My guess is that the read file is corrupted or that bwa is not installed properly. Can you check with

gzip -t ERR...gz
bwa mem

and share the result.