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ui.R
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ui.R
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library(shiny)
trait.choices = list("Aridity","SummerPrecip","MaxAvgHigh","WinterPrecip","WinterAvgHigh")
shinyUI(fluidPage(
titlePanel("Phylogenetic Comparative Methods"),
tabsetPanel(
id='mainpanel',
tabPanel('Introduction',
tags$iframe(style="height:600px; width:100%", src="Applied_Phylogenetics_InClass.pdf")),
tabPanel('Trait Table',div(dataTableOutput("traitTable")),style='font-size:80%'),
tabPanel('Tree Plot',
plotOutput("treePlot")
),
tabPanel('Simple Regression',
fluidPage(
fluidRow(
column(3,
wellPanel(
selectInput("dependent",
label= "Choose a dependent variable",
choices = trait.choices,
selected = "Aridity"
),
selectInput("independent",
label= "Choose an independent variable",
choices = trait.choices,
selected = "SummerPrecip"
)
),
wellPanel(
textOutput("r.text"),
textOutput("p.text")
)
),
column(9,
mainPanel(plotOutput("simpleRegression"))
)
)
)
),
tabPanel('Independent Contrasts',
fluidPage(
fluidRow(
column(3,
wellPanel(
selectInput("dependent.pic",
label= "Choose a dependent variable",
choices = trait.choices,
selected = "Aridity"
),
selectInput("independent.pic",
label= "Choose an independent variable",
choices = trait.choices,
selected = "SummerPrecip"
)
),
wellPanel(
textOutput("r.pic.text"),
textOutput("p.pic.text")
)
),
column(9,
mainPanel(plotOutput("picRegression"))
)
)
)
),
tabPanel('Phylogenetic Signal',
fluidPage(
fluidRow(
column(3,
wellPanel(
selectInput("phenogram.trait",
label= "Choose a trait",
choices = trait.choices,
selected = "Aridity"
)
),
wellPanel(
selectInput("statistic",
label = "Choose a test statistic",
choices = list("K","lambda"),
selected = "K"),
checkboxInput("do.test",label="Conduct Hypothesis Test")
),
wellPanel(
verbatimTextOutput("phylosignal")
)
),
column(9,
mainPanel(plotOutput("my.phenogram",width = '100%'))
)
)
)
)
),
sliderInput("treenum",
"Pick a Tree:",
min = 1,
max = 330,
value = 30),
p("All data for this module comes from: Evans ME, Hearn DJ, Hahn WJ, Spangle JM, and Venable DL. 2007. Climate and life-history evolution in evening primroses (Oenothera, Onagraceae): a phylogenetic comparative analysis. Evolution 59(9): 1914-1927.")
))