Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Problem installing Conda version #154

Open
emsisson opened this issue Sep 17, 2024 · 0 comments
Open

Problem installing Conda version #154

emsisson opened this issue Sep 17, 2024 · 0 comments

Comments

@emsisson
Copy link

I am having trouble installing the Conda version of SQANTI3, but this may be due to our situation. Due to licensing restrictions, we cannot access domain anaconda.com; this prevents access to channel "defaults".

Is channel "defaults" required to build SQANTI3?

Here is the error I am seeing:

---- BEGIN ----
ERROR conda.core.link:_execute(952): An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.11-r43hdfd78af_1'.
Rolling back transaction: done

LinkError: post-link script failed for package bioconda::bioconductor-genomeinfodbdata-1.2.11-r43hdfd78af_1
location of failed script: /home/username/.conda/envs/sqanti3-5.2.2/bin/.bioconductor-genomeinfodbdata-post-link.sh
---- END ----

Unfortunately, the failed script "/home/username/.conda/envs/sqanti3-5.2.2/bin/.bioconductor-genomeinfodbdata-post-link.sh" does not exist after the installation attempt fails.

I have been able to launch R 4.3.1 and run command

BiocManager::install("GenomeInfoDbData")
which installed GenomeInfoDbData_1.2.11 successfully.

If channel "defaults" is necessary, then I am out of luck. Otherwise, what else should I try?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant