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annotation - pairwise comparisons #13

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skim082 opened this issue Jun 14, 2022 · 0 comments
Open

annotation - pairwise comparisons #13

skim082 opened this issue Jun 14, 2022 · 0 comments

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@skim082
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skim082 commented Jun 14, 2022

Dear Flexidot Developers,

thank you for flexidot - this is just what we needed.
we would like to compare two different genomes in a pairwise dot-plot with annotation but I cannot figure out how to do so.

  1. It seems that the annotation option only works for "self" and "all-comparisons" (-p 0/2) but not pairwise dot plots.
    Even for "all comparisons" the annotations only show on the diagonal tiles that are self-dotplots.

Is there a way to implement annotations for pair-wise comparison dotplots?

  1. also, is there anyway to automatically assign color shading for the annotations without manually creating a color-config file?

Im currently using the python 3 version ("flexidot_v2.01_alpha01_py3").

thank you!

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