Column.h

#ifndef COLUMN_H
#define COLUMN_H

#include "Data.h"
#include "Parameters.h"

class Column{

    public:
        Column();
        Column(std::vector<std::pair<int,int>> dt_fragmentedColumn, Parameters * prm, std::string _periodic);
        virtual ~Column();

        std::string periodic;
        double dx, dy, dz;

        Volumes volumes;
        Surfaces surfaces;
        Walls outerWalls, beadWalls;

        void generateBoxSurfaces();
        void AddPhysicalGroups();
        void separateBoundingSurfaces(std::vector<std::pair<int, int>> dt_surfaces, Walls& tWall);

        void stats();

        void setupPeriodicSurfaces(Walls& tWall);
        void matchPeriodicSurfaces(std::vector<int>& ltags, std::vector<int>& rtags, int per_dir, std::vector<double> affineTranslation);
        void linkPeriodicZ(Column& second);

        void write(std::string outpath, std::string outfile, std::string extension);
        void writeFragments(std::string outpath, std::string outfile, std::string extension);
        void meshVolumes(Parameters * prm);
};

#endif