diff --git a/.github/workflows/build-package-install.yaml b/.github/workflows/build-package-install.yaml new file mode 100644 index 0000000..26f50cf --- /dev/null +++ b/.github/workflows/build-package-install.yaml @@ -0,0 +1,60 @@ +name: Build and Install + +on: + push: + branches: + - '**' + +jobs: + build-install: + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest] + python-version: ["3.9", "3.10", "3.11"] + + steps: + - name: Checkout repository + uses: actions/checkout@v2 + + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: ${{ matrix.python-version }} + + - name: Check python3 == python${{ matrix.python-version }} + run: | + installed_python=$(python3 --version) + echo "Installed Python: $installed_python" + if [[ "$installed_python" != *"${{ matrix.python-version }}"* ]]; then + echo "Python version mismatch. Expected: ${{ matrix.python-version }}, but got: $installed_python" + exit 1 + else + echo "${{ matrix.python-version }}" + fi + + + - name: Install Poetry + run: | + curl -sSL https://install.python-poetry.org | python3 - + + - name: Install dependencies + run: | + python3 -m pip install setuptools + poetry install --with dev + + - name: Package with Poetry + run: | + # clear out dist folder first + rm -rf dist + poetry build + + - name: Install Built Package + run: | + python3 -m pip install dist/*.whl + + - name: Test Installation + run: | + petprep_extract_tacs --version + merge_tacs --help + diff --git a/Makefile b/Makefile index 4ed36db..d47d1df 100644 --- a/Makefile +++ b/Makefile @@ -19,3 +19,10 @@ dockerbuild: dockerpush: dockerbuild docker push openneuropet/$(shell cat pyproject.toml | grep name | cut -d '"' -f 2):$(shell cat pyproject.toml | grep version | head -n 1 | cut -d '"' -f 2) docker push openneuropet/$(shell cat pyproject.toml | grep name | cut -d '"' -f 2):latest + +# runs github actions ci locally using nektos/act +# needs to be installed with brew install act on mac +# install instructions for other platforms can be found here: +# https://nektosact.com/installation/index.html +ci: + act push \ No newline at end of file diff --git a/README.md b/README.md index 174f1c0..204be14 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,9 @@ # BIDS App for PETPrep Extract Time Activity Curves Workflow +--- + +[![Build and Install](https://github.com/mnoergaard/petprep_extract_tacs/actions/workflows/build-package-install.yaml/badge.svg)](https://github.com/mnoergaard/petprep_extract_tacs/actions/workflows/build-package-install.yaml) + ## Overview This BIDS App is designed to extract time activity curves (TACs) from PET data. The workflow has options to extract TACs from different regions of the brain, and it uses the Brain Imaging Data Structure (BIDS) standard for organizing and describing the data. This README will guide you through how to use the app and the various options available. The workflow requires that freesurfer's recon-all was already executed for these subjects, and exist as a 'freesurfer' directory inside the derivatives directory for the given BIDS dataset. diff --git a/poetry.lock b/poetry.lock index 197a24b..52b7cc9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. [[package]] name = "appnope" @@ -24,21 +24,18 @@ files = [ [[package]] name = "asttokens" -version = "2.4.1" +version = "3.0.0" description = "Annotate AST trees with source code positions" optional = false -python-versions = "*" +python-versions = ">=3.8" files = [ - {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"}, - {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"}, + {file = "asttokens-3.0.0-py3-none-any.whl", hash = "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2"}, + {file = "asttokens-3.0.0.tar.gz", hash = "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7"}, ] -[package.dependencies] -six = ">=1.12.0" - [package.extras] -astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"] -test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"] +astroid = ["astroid (>=2,<4)"] +test = ["astroid (>=2,<4)", "pytest", "pytest-cov", "pytest-xdist"] [[package]] name = "attrs" @@ -483,61 +480,61 @@ typing = ["typing-extensions (>=4.12.2)"] [[package]] name = "fonttools" -version = "4.55.0" +version = "4.55.2" description = "Tools to manipulate font files" optional = false python-versions = ">=3.8" files = [ - {file = "fonttools-4.55.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:51c029d4c0608a21a3d3d169dfc3fb776fde38f00b35ca11fdab63ba10a16f61"}, - {file = "fonttools-4.55.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:bca35b4e411362feab28e576ea10f11268b1aeed883b9f22ed05675b1e06ac69"}, - {file = "fonttools-4.55.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9ce4ba6981e10f7e0ccff6348e9775ce25ffadbee70c9fd1a3737e3e9f5fa74f"}, - {file = "fonttools-4.55.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:31d00f9852a6051dac23294a4cf2df80ced85d1d173a61ba90a3d8f5abc63c60"}, - {file = "fonttools-4.55.0-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:e198e494ca6e11f254bac37a680473a311a88cd40e58f9cc4dc4911dfb686ec6"}, - {file = "fonttools-4.55.0-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:7208856f61770895e79732e1dcbe49d77bd5783adf73ae35f87fcc267df9db81"}, - {file = "fonttools-4.55.0-cp310-cp310-win32.whl", hash = "sha256:e7e6a352ff9e46e8ef8a3b1fe2c4478f8a553e1b5a479f2e899f9dc5f2055880"}, - {file = "fonttools-4.55.0-cp310-cp310-win_amd64.whl", hash = "sha256:636caaeefe586d7c84b5ee0734c1a5ab2dae619dc21c5cf336f304ddb8f6001b"}, - {file = "fonttools-4.55.0-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:fa34aa175c91477485c44ddfbb51827d470011e558dfd5c7309eb31bef19ec51"}, - {file = "fonttools-4.55.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:37dbb3fdc2ef7302d3199fb12468481cbebaee849e4b04bc55b77c24e3c49189"}, - {file = "fonttools-4.55.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:b5263d8e7ef3c0ae87fbce7f3ec2f546dc898d44a337e95695af2cd5ea21a967"}, - {file = "fonttools-4.55.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f307f6b5bf9e86891213b293e538d292cd1677e06d9faaa4bf9c086ad5f132f6"}, - {file = "fonttools-4.55.0-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:f0a4b52238e7b54f998d6a56b46a2c56b59c74d4f8a6747fb9d4042190f37cd3"}, - {file = "fonttools-4.55.0-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:3e569711464f777a5d4ef522e781dc33f8095ab5efd7548958b36079a9f2f88c"}, - {file = "fonttools-4.55.0-cp311-cp311-win32.whl", hash = "sha256:2b3ab90ec0f7b76c983950ac601b58949f47aca14c3f21eed858b38d7ec42b05"}, - {file = "fonttools-4.55.0-cp311-cp311-win_amd64.whl", hash = "sha256:aa046f6a63bb2ad521004b2769095d4c9480c02c1efa7d7796b37826508980b6"}, - {file = "fonttools-4.55.0-cp312-cp312-macosx_10_13_universal2.whl", hash = "sha256:838d2d8870f84fc785528a692e724f2379d5abd3fc9dad4d32f91cf99b41e4a7"}, - {file = "fonttools-4.55.0-cp312-cp312-macosx_10_13_x86_64.whl", hash = "sha256:f46b863d74bab7bb0d395f3b68d3f52a03444964e67ce5c43ce43a75efce9246"}, - {file = "fonttools-4.55.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:33b52a9cfe4e658e21b1f669f7309b4067910321757fec53802ca8f6eae96a5a"}, - {file = "fonttools-4.55.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:732a9a63d6ea4a81b1b25a1f2e5e143761b40c2e1b79bb2b68e4893f45139a40"}, - {file = "fonttools-4.55.0-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:7dd91ac3fcb4c491bb4763b820bcab6c41c784111c24172616f02f4bc227c17d"}, - {file = "fonttools-4.55.0-cp312-cp312-musllinux_1_2_x86_64.whl", hash = "sha256:1f0e115281a32ff532118aa851ef497a1b7cda617f4621c1cdf81ace3e36fb0c"}, - {file = "fonttools-4.55.0-cp312-cp312-win32.whl", hash = "sha256:6c99b5205844f48a05cb58d4a8110a44d3038c67ed1d79eb733c4953c628b0f6"}, - {file = "fonttools-4.55.0-cp312-cp312-win_amd64.whl", hash = "sha256:f8c8c76037d05652510ae45be1cd8fb5dd2fd9afec92a25374ac82255993d57c"}, - {file = "fonttools-4.55.0-cp313-cp313-macosx_10_13_universal2.whl", hash = "sha256:8118dc571921dc9e4b288d9cb423ceaf886d195a2e5329cc427df82bba872cd9"}, - {file = "fonttools-4.55.0-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:01124f2ca6c29fad4132d930da69158d3f49b2350e4a779e1efbe0e82bd63f6c"}, - {file = "fonttools-4.55.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:81ffd58d2691f11f7c8438796e9f21c374828805d33e83ff4b76e4635633674c"}, - {file = "fonttools-4.55.0-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5435e5f1eb893c35c2bc2b9cd3c9596b0fcb0a59e7a14121562986dd4c47b8dd"}, - {file = "fonttools-4.55.0-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:d12081729280c39d001edd0f4f06d696014c26e6e9a0a55488fabc37c28945e4"}, - {file = "fonttools-4.55.0-cp313-cp313-musllinux_1_2_x86_64.whl", hash = "sha256:a7ad1f1b98ab6cb927ab924a38a8649f1ffd7525c75fe5b594f5dab17af70e18"}, - {file = "fonttools-4.55.0-cp313-cp313-win32.whl", hash = "sha256:abe62987c37630dca69a104266277216de1023cf570c1643bb3a19a9509e7a1b"}, - {file = "fonttools-4.55.0-cp313-cp313-win_amd64.whl", hash = "sha256:2863555ba90b573e4201feaf87a7e71ca3b97c05aa4d63548a4b69ea16c9e998"}, - {file = "fonttools-4.55.0-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:00f7cf55ad58a57ba421b6a40945b85ac7cc73094fb4949c41171d3619a3a47e"}, - {file = "fonttools-4.55.0-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:f27526042efd6f67bfb0cc2f1610fa20364396f8b1fc5edb9f45bb815fb090b2"}, - {file = "fonttools-4.55.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e8e67974326af6a8879dc2a4ec63ab2910a1c1a9680ccd63e4a690950fceddbe"}, - {file = "fonttools-4.55.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:61dc0a13451143c5e987dec5254d9d428f3c2789a549a7cf4f815b63b310c1cc"}, - {file = "fonttools-4.55.0-cp38-cp38-musllinux_1_2_aarch64.whl", hash = "sha256:b2e526b325a903868c62155a6a7e24df53f6ce4c5c3160214d8fe1be2c41b478"}, - {file = "fonttools-4.55.0-cp38-cp38-musllinux_1_2_x86_64.whl", hash = "sha256:b7ef9068a1297714e6fefe5932c33b058aa1d45a2b8be32a4c6dee602ae22b5c"}, - {file = "fonttools-4.55.0-cp38-cp38-win32.whl", hash = "sha256:55718e8071be35dff098976bc249fc243b58efa263768c611be17fe55975d40a"}, - {file = "fonttools-4.55.0-cp38-cp38-win_amd64.whl", hash = "sha256:553bd4f8cc327f310c20158e345e8174c8eed49937fb047a8bda51daf2c353c8"}, - {file = "fonttools-4.55.0-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:3f901cef813f7c318b77d1c5c14cf7403bae5cb977cede023e22ba4316f0a8f6"}, - {file = "fonttools-4.55.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:8c9679fc0dd7e8a5351d321d8d29a498255e69387590a86b596a45659a39eb0d"}, - {file = "fonttools-4.55.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:dd2820a8b632f3307ebb0bf57948511c2208e34a4939cf978333bc0a3f11f838"}, - {file = "fonttools-4.55.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:23bbbb49bec613a32ed1b43df0f2b172313cee690c2509f1af8fdedcf0a17438"}, - {file = "fonttools-4.55.0-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:a656652e1f5d55b9728937a7e7d509b73d23109cddd4e89ee4f49bde03b736c6"}, - {file = "fonttools-4.55.0-cp39-cp39-musllinux_1_2_x86_64.whl", hash = "sha256:f50a1f455902208486fbca47ce33054208a4e437b38da49d6721ce2fef732fcf"}, - {file = "fonttools-4.55.0-cp39-cp39-win32.whl", hash = "sha256:161d1ac54c73d82a3cded44202d0218ab007fde8cf194a23d3dd83f7177a2f03"}, - {file = "fonttools-4.55.0-cp39-cp39-win_amd64.whl", hash = "sha256:ca7fd6987c68414fece41c96836e945e1f320cda56fc96ffdc16e54a44ec57a2"}, - {file = "fonttools-4.55.0-py3-none-any.whl", hash = "sha256:12db5888cd4dd3fcc9f0ee60c6edd3c7e1fd44b7dd0f31381ea03df68f8a153f"}, - {file = "fonttools-4.55.0.tar.gz", hash = "sha256:7636acc6ab733572d5e7eec922b254ead611f1cdad17be3f0be7418e8bfaca71"}, + {file = "fonttools-4.55.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:bef0f8603834643b1a6419d57902f18e7d950ec1a998fb70410635c598dc1a1e"}, + {file = "fonttools-4.55.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:944228b86d472612d3b48bcc83b31c25c2271e63fdc74539adfcfa7a96d487fb"}, + {file = "fonttools-4.55.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9f0e55f5da594b85f269cfbecd2f6bd3e07d0abba68870bc3f34854de4fa4678"}, + {file = "fonttools-4.55.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5b1a6e576db0c83c1b91925bf1363478c4bb968dbe8433147332fb5782ce6190"}, + {file = "fonttools-4.55.2-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:616368b15716781bc84df5c2191dc0540137aaef56c2771eb4b89b90933f347a"}, + {file = "fonttools-4.55.2-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:7bbae4f3915225c2c37670da68e2bf18a21206060ad31dfb95fec91ef641caa7"}, + {file = "fonttools-4.55.2-cp310-cp310-win32.whl", hash = "sha256:8b02b10648d69d67a7eb055f4d3eedf4a85deb22fb7a19fbd9acbae7c7538199"}, + {file = "fonttools-4.55.2-cp310-cp310-win_amd64.whl", hash = "sha256:bbea0ab841113ac8e8edde067e099b7288ffc6ac2dded538b131c2c0595d5f77"}, + {file = "fonttools-4.55.2-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:d34525e8141286fa976e14806639d32294bfb38d28bbdb5f6be9f46a1cd695a6"}, + {file = "fonttools-4.55.2-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:0ecd1c2b1c2ec46bb73685bc5473c72e16ed0930ef79bc2919ccadc43a99fb16"}, + {file = "fonttools-4.55.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9008438ad59e5a8e403a62fbefef2b2ff377eb3857d90a3f2a5f4d674ff441b2"}, + {file = "fonttools-4.55.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:131591ac8d7a47043aaf29581aba755ae151d46e49d2bf49608601efd71e8b4d"}, + {file = "fonttools-4.55.2-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:4c83381c3e3e3d9caa25527c4300543578341f21aae89e4fbbb4debdda8d82a2"}, + {file = "fonttools-4.55.2-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:42aca564b575252fd9954ed0d91d97a24de24289a16ce8ff74ed0bdf5ecebf11"}, + {file = "fonttools-4.55.2-cp311-cp311-win32.whl", hash = "sha256:c6457f650ebe15baa17fc06e256227f0a47f46f80f27ec5a0b00160de8dc2c13"}, + {file = "fonttools-4.55.2-cp311-cp311-win_amd64.whl", hash = "sha256:5cfa67414d7414442a5635ff634384101c54f53bb7b0e04aa6a61b013fcce194"}, + {file = "fonttools-4.55.2-cp312-cp312-macosx_10_13_universal2.whl", hash = "sha256:18f082445b8fe5e91c53e6184f4c1c73f3f965c8bcc614c6cd6effd573ce6c1a"}, + {file = "fonttools-4.55.2-cp312-cp312-macosx_10_13_x86_64.whl", hash = "sha256:27c0f91adbbd706e8acd1db73e3e510118e62d0ffb651864567dccc5b2339f90"}, + {file = "fonttools-4.55.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:3d8ccce035320d63dba0c35f52499322f5531dbe85bba1514c7cea26297e4c54"}, + {file = "fonttools-4.55.2-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:96e126df9615df214ec7f04bebcf60076297fbc10b75c777ce58b702d7708ffb"}, + {file = "fonttools-4.55.2-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:508ebb42956a7a931c4092dfa2d9b4ffd4f94cea09b8211199090d2bd082506b"}, + {file = "fonttools-4.55.2-cp312-cp312-musllinux_1_2_x86_64.whl", hash = "sha256:c1b9de46ef7b683d50400abf9f1578eaceee271ff51c36bf4b7366f2be29f498"}, + {file = "fonttools-4.55.2-cp312-cp312-win32.whl", hash = "sha256:2df61d9fc15199cc86dad29f64dd686874a3a52dda0c2d8597d21f509f95c332"}, + {file = "fonttools-4.55.2-cp312-cp312-win_amd64.whl", hash = "sha256:d337ec087da8216a828574aa0525d869df0a2ac217a2efc1890974ddd1fbc5b9"}, + {file = "fonttools-4.55.2-cp313-cp313-macosx_10_13_universal2.whl", hash = "sha256:10aff204e2edee1d312fa595c06f201adf8d528a3b659cfb34cd47eceaaa6a26"}, + {file = "fonttools-4.55.2-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:09fe922a3eff181fd07dd724cdb441fb6b9fc355fd1c0f1aa79aca60faf1fbdd"}, + {file = "fonttools-4.55.2-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:487e1e8b524143a799bda0169c48b44a23a6027c1bb1957d5a172a7d3a1dd704"}, + {file = "fonttools-4.55.2-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9b1726872e09268bbedb14dc02e58b7ea31ecdd1204c6073eda4911746b44797"}, + {file = "fonttools-4.55.2-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:6fc88cfb58b0cd7b48718c3e61dd0d0a3ee8e2c86b973342967ce09fbf1db6d4"}, + {file = "fonttools-4.55.2-cp313-cp313-musllinux_1_2_x86_64.whl", hash = "sha256:e857fe1859901ad8c5cab32e0eebc920adb09f413d2d73b74b677cf47b28590c"}, + {file = "fonttools-4.55.2-cp313-cp313-win32.whl", hash = "sha256:81ccd2b3a420b8050c7d9db3be0555d71662973b3ef2a1d921a2880b58957db8"}, + {file = "fonttools-4.55.2-cp313-cp313-win_amd64.whl", hash = "sha256:d559eb1744c7dcfa90ae60cb1a4b3595e898e48f4198738c321468c01180cd83"}, + {file = "fonttools-4.55.2-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:6b5917ef79cac8300b88fd6113003fd01bbbbea2ea060a27b95d8f77cb4c65c2"}, + {file = "fonttools-4.55.2-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:663eba5615d6abaaf616432354eb7ce951d518e43404371bcc2b0694ef21e8d6"}, + {file = "fonttools-4.55.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:803d5cef5fc47f44f5084d154aa3d6f069bb1b60e32390c225f897fa19b0f939"}, + {file = "fonttools-4.55.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8bc5f100de0173cc39102c0399bd6c3bd544bbdf224957933f10ee442d43cddd"}, + {file = "fonttools-4.55.2-cp38-cp38-musllinux_1_2_aarch64.whl", hash = "sha256:3d9bbc1e380fdaf04ad9eabd8e3e6a4301eaf3487940893e9fd98537ea2e283b"}, + {file = "fonttools-4.55.2-cp38-cp38-musllinux_1_2_x86_64.whl", hash = "sha256:42a9afedff07b6f75aa0f39b5e49922ac764580ef3efce035ca30284b2ee65c8"}, + {file = "fonttools-4.55.2-cp38-cp38-win32.whl", hash = "sha256:f1c76f423f1a241df08f87614364dff6e0b7ce23c962c1b74bd995ec7c0dad13"}, + {file = "fonttools-4.55.2-cp38-cp38-win_amd64.whl", hash = "sha256:25062b6ca03464dd5179fc2040fb19e03391b7cc49b9cc4f879312e638605c5c"}, + {file = "fonttools-4.55.2-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:d1100d8e665fe386a79cab59446992de881ea74d0d6c191bb988642692aa2421"}, + {file = "fonttools-4.55.2-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:dbdc251c5e472e5ae6bc816f9b82718b8e93ff7992e7331d6cf3562b96aa268e"}, + {file = "fonttools-4.55.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d0bf24d2b02dbc9376d795a63062632ff73e3e9e60c0229373f500aed7e86dd7"}, + {file = "fonttools-4.55.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d4ff250ed4ff05015dfd9cf2adf7570c7a383ca80f4d9732ac484a5ed0d8453c"}, + {file = "fonttools-4.55.2-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:44cf2a98aa661dbdeb8c03f5e405b074e2935196780bb729888639f5276067d9"}, + {file = "fonttools-4.55.2-cp39-cp39-musllinux_1_2_x86_64.whl", hash = "sha256:22ef222740eb89d189bf0612eb98fbae592c61d7efeac51bfbc2a1592d469557"}, + {file = "fonttools-4.55.2-cp39-cp39-win32.whl", hash = "sha256:93f439ca27e55f585e7aaa04a74990acd983b5f2245e41d6b79f0a8b44e684d8"}, + {file = "fonttools-4.55.2-cp39-cp39-win_amd64.whl", hash = "sha256:627cf10d6f5af5bec6324c18a2670f134c29e1b7dce3fb62e8ef88baa6cba7a9"}, + {file = "fonttools-4.55.2-py3-none-any.whl", hash = "sha256:8e2d89fbe9b08d96e22c7a81ec04a4e8d8439c31223e2dc6f2f9fc8ff14bdf9f"}, + {file = "fonttools-4.55.2.tar.gz", hash = "sha256:45947e7b3f9673f91df125d375eb57b9a23f2a603f438a1aebf3171bffa7a205"}, ] [package.extras] @@ -632,13 +629,13 @@ all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2 [[package]] name = "imageio" -version = "2.36.0" +version = "2.36.1" description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats." optional = false python-versions = ">=3.9" files = [ - {file = "imageio-2.36.0-py3-none-any.whl", hash = "sha256:471f1eda55618ee44a3c9960911c35e647d9284c68f077e868df633398f137f0"}, - {file = "imageio-2.36.0.tar.gz", hash = "sha256:1c8f294db862c256e9562354d65aa54725b8dafed7f10f02bb3ec20ec1678850"}, + {file = "imageio-2.36.1-py3-none-any.whl", hash = "sha256:20abd2cae58e55ca1af8a8dcf43293336a59adf0391f1917bf8518633cfc2cdf"}, + {file = "imageio-2.36.1.tar.gz", hash = "sha256:e4e1d231f47f9a9e16100b0f7ce1a86e8856fb4d1c0fa2c4365a316f1746be62"}, ] [package.dependencies] @@ -1539,39 +1536,47 @@ docopt = ">=0.6.2" [[package]] name = "numpy" -version = "1.24.2" +version = "1.26.4" description = "Fundamental package for array computing in Python" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "numpy-1.24.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:eef70b4fc1e872ebddc38cddacc87c19a3709c0e3e5d20bf3954c147b1dd941d"}, - {file = "numpy-1.24.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e8d2859428712785e8a8b7d2b3ef0a1d1565892367b32f915c4a4df44d0e64f5"}, - {file = "numpy-1.24.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:6524630f71631be2dabe0c541e7675db82651eb998496bbe16bc4f77f0772253"}, - {file = "numpy-1.24.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a51725a815a6188c662fb66fb32077709a9ca38053f0274640293a14fdd22978"}, - {file = "numpy-1.24.2-cp310-cp310-win32.whl", hash = "sha256:2620e8592136e073bd12ee4536149380695fbe9ebeae845b81237f986479ffc9"}, - {file = "numpy-1.24.2-cp310-cp310-win_amd64.whl", hash = "sha256:97cf27e51fa078078c649a51d7ade3c92d9e709ba2bfb97493007103c741f1d0"}, - {file = "numpy-1.24.2-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:7de8fdde0003f4294655aa5d5f0a89c26b9f22c0a58790c38fae1ed392d44a5a"}, - {file = "numpy-1.24.2-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:4173bde9fa2a005c2c6e2ea8ac1618e2ed2c1c6ec8a7657237854d42094123a0"}, - {file = "numpy-1.24.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4cecaed30dc14123020f77b03601559fff3e6cd0c048f8b5289f4eeabb0eb281"}, - {file = "numpy-1.24.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9a23f8440561a633204a67fb44617ce2a299beecf3295f0d13c495518908e910"}, - {file = "numpy-1.24.2-cp311-cp311-win32.whl", hash = "sha256:e428c4fbfa085f947b536706a2fc349245d7baa8334f0c5723c56a10595f9b95"}, - {file = "numpy-1.24.2-cp311-cp311-win_amd64.whl", hash = "sha256:557d42778a6869c2162deb40ad82612645e21d79e11c1dc62c6e82a2220ffb04"}, - {file = "numpy-1.24.2-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:d0a2db9d20117bf523dde15858398e7c0858aadca7c0f088ac0d6edd360e9ad2"}, - {file = "numpy-1.24.2-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:c72a6b2f4af1adfe193f7beb91ddf708ff867a3f977ef2ec53c0ffb8283ab9f5"}, - {file = "numpy-1.24.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c29e6bd0ec49a44d7690ecb623a8eac5ab8a923bce0bea6293953992edf3a76a"}, - {file = "numpy-1.24.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2eabd64ddb96a1239791da78fa5f4e1693ae2dadc82a76bc76a14cbb2b966e96"}, - {file = "numpy-1.24.2-cp38-cp38-win32.whl", hash = "sha256:e3ab5d32784e843fc0dd3ab6dcafc67ef806e6b6828dc6af2f689be0eb4d781d"}, - {file = "numpy-1.24.2-cp38-cp38-win_amd64.whl", hash = "sha256:76807b4063f0002c8532cfeac47a3068a69561e9c8715efdad3c642eb27c0756"}, - {file = "numpy-1.24.2-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:4199e7cfc307a778f72d293372736223e39ec9ac096ff0a2e64853b866a8e18a"}, - {file = "numpy-1.24.2-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:adbdce121896fd3a17a77ab0b0b5eedf05a9834a18699db6829a64e1dfccca7f"}, - {file = "numpy-1.24.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:889b2cc88b837d86eda1b17008ebeb679d82875022200c6e8e4ce6cf549b7acb"}, - {file = "numpy-1.24.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f64bb98ac59b3ea3bf74b02f13836eb2e24e48e0ab0145bbda646295769bd780"}, - {file = "numpy-1.24.2-cp39-cp39-win32.whl", hash = "sha256:63e45511ee4d9d976637d11e6c9864eae50e12dc9598f531c035265991910468"}, - {file = "numpy-1.24.2-cp39-cp39-win_amd64.whl", hash = "sha256:a77d3e1163a7770164404607b7ba3967fb49b24782a6ef85d9b5f54126cc39e5"}, - {file = "numpy-1.24.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl", hash = "sha256:92011118955724465fb6853def593cf397b4a1367495e0b59a7e69d40c4eb71d"}, - {file = "numpy-1.24.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f9006288bcf4895917d02583cf3411f98631275bc67cce355a7f39f8c14338fa"}, - {file = "numpy-1.24.2-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:150947adbdfeceec4e5926d956a06865c1c690f2fd902efede4ca6fe2e657c3f"}, - {file = "numpy-1.24.2.tar.gz", hash = "sha256:003a9f530e880cb2cd177cba1af7220b9aa42def9c4afc2a2fc3ee6be7eb2b22"}, + {file = "numpy-1.26.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9ff0f4f29c51e2803569d7a51c2304de5554655a60c5d776e35b4a41413830d0"}, + {file = "numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2e4ee3380d6de9c9ec04745830fd9e2eccb3e6cf790d39d7b98ffd19b0dd754a"}, + {file = "numpy-1.26.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d209d8969599b27ad20994c8e41936ee0964e6da07478d6c35016bc386b66ad4"}, + {file = "numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ffa75af20b44f8dba823498024771d5ac50620e6915abac414251bd971b4529f"}, + {file = "numpy-1.26.4-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:62b8e4b1e28009ef2846b4c7852046736bab361f7aeadeb6a5b89ebec3c7055a"}, + {file = "numpy-1.26.4-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:a4abb4f9001ad2858e7ac189089c42178fcce737e4169dc61321660f1a96c7d2"}, + {file = "numpy-1.26.4-cp310-cp310-win32.whl", hash = "sha256:bfe25acf8b437eb2a8b2d49d443800a5f18508cd811fea3181723922a8a82b07"}, + {file = "numpy-1.26.4-cp310-cp310-win_amd64.whl", hash = "sha256:b97fe8060236edf3662adfc2c633f56a08ae30560c56310562cb4f95500022d5"}, + {file = "numpy-1.26.4-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:4c66707fabe114439db9068ee468c26bbdf909cac0fb58686a42a24de1760c71"}, + {file = "numpy-1.26.4-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:edd8b5fe47dab091176d21bb6de568acdd906d1887a4584a15a9a96a1dca06ef"}, + {file = "numpy-1.26.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7ab55401287bfec946ced39700c053796e7cc0e3acbef09993a9ad2adba6ca6e"}, + {file = "numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:666dbfb6ec68962c033a450943ded891bed2d54e6755e35e5835d63f4f6931d5"}, + {file = "numpy-1.26.4-cp311-cp311-musllinux_1_1_aarch64.whl", hash = "sha256:96ff0b2ad353d8f990b63294c8986f1ec3cb19d749234014f4e7eb0112ceba5a"}, + {file = "numpy-1.26.4-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:60dedbb91afcbfdc9bc0b1f3f402804070deed7392c23eb7a7f07fa857868e8a"}, + {file = "numpy-1.26.4-cp311-cp311-win32.whl", hash = "sha256:1af303d6b2210eb850fcf03064d364652b7120803a0b872f5211f5234b399f20"}, + {file = "numpy-1.26.4-cp311-cp311-win_amd64.whl", hash = "sha256:cd25bcecc4974d09257ffcd1f098ee778f7834c3ad767fe5db785be9a4aa9cb2"}, + {file = "numpy-1.26.4-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:b3ce300f3644fb06443ee2222c2201dd3a89ea6040541412b8fa189341847218"}, + {file = "numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:03a8c78d01d9781b28a6989f6fa1bb2c4f2d51201cf99d3dd875df6fbd96b23b"}, + {file = "numpy-1.26.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9fad7dcb1aac3c7f0584a5a8133e3a43eeb2fe127f47e3632d43d677c66c102b"}, + {file = "numpy-1.26.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:675d61ffbfa78604709862923189bad94014bef562cc35cf61d3a07bba02a7ed"}, + {file = "numpy-1.26.4-cp312-cp312-musllinux_1_1_aarch64.whl", hash = "sha256:ab47dbe5cc8210f55aa58e4805fe224dac469cde56b9f731a4c098b91917159a"}, + {file = "numpy-1.26.4-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:1dda2e7b4ec9dd512f84935c5f126c8bd8b9f2fc001e9f54af255e8c5f16b0e0"}, + {file = "numpy-1.26.4-cp312-cp312-win32.whl", hash = "sha256:50193e430acfc1346175fcbdaa28ffec49947a06918b7b92130744e81e640110"}, + {file = "numpy-1.26.4-cp312-cp312-win_amd64.whl", hash = "sha256:08beddf13648eb95f8d867350f6a018a4be2e5ad54c8d8caed89ebca558b2818"}, + {file = "numpy-1.26.4-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:7349ab0fa0c429c82442a27a9673fc802ffdb7c7775fad780226cb234965e53c"}, + {file = "numpy-1.26.4-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:52b8b60467cd7dd1e9ed082188b4e6bb35aa5cdd01777621a1658910745b90be"}, + {file = "numpy-1.26.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d5241e0a80d808d70546c697135da2c613f30e28251ff8307eb72ba696945764"}, + {file = "numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f870204a840a60da0b12273ef34f7051e98c3b5961b61b0c2c1be6dfd64fbcd3"}, + {file = "numpy-1.26.4-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:679b0076f67ecc0138fd2ede3a8fd196dddc2ad3254069bcb9faf9a79b1cebcd"}, + {file = "numpy-1.26.4-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:47711010ad8555514b434df65f7d7b076bb8261df1ca9bb78f53d3b2db02e95c"}, + {file = "numpy-1.26.4-cp39-cp39-win32.whl", hash = "sha256:a354325ee03388678242a4d7ebcd08b5c727033fcff3b2f536aea978e15ee9e6"}, + {file = "numpy-1.26.4-cp39-cp39-win_amd64.whl", hash = "sha256:3373d5d70a5fe74a2c1bb6d2cfd9609ecf686d47a2d7b1d37a8f3b6bf6003aea"}, + {file = "numpy-1.26.4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl", hash = "sha256:afedb719a9dcfc7eaf2287b839d8198e06dcd4cb5d276a3df279231138e83d30"}, + {file = "numpy-1.26.4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:95a7476c59002f2f6c590b9b7b998306fba6a5aa646b1e22ddfeaf8f78c3a29c"}, + {file = "numpy-1.26.4-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:7e50d0a0cc3189f9cb0aeb3a6a6af18c16f59f004b866cd2be1c14b36134a4a0"}, + {file = "numpy-1.26.4.tar.gz", hash = "sha256:2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010"}, ] [[package]] @@ -1940,13 +1945,13 @@ tutorial = ["ipykernel", "jinja2", "jupyter-client", "markupsafe", "nbconvert"] [[package]] name = "pydot" -version = "3.0.2" +version = "3.0.3" description = "Python interface to Graphviz's Dot" optional = false python-versions = ">=3.8" files = [ - {file = "pydot-3.0.2-py3-none-any.whl", hash = "sha256:99cedaa55d04abb0b2bc56d9981a6da781053dd5ac75c428e8dd53db53f90b14"}, - {file = "pydot-3.0.2.tar.gz", hash = "sha256:9180da540b51b3aa09fbf81140b3edfbe2315d778e8589a7d0a4a69c41332bae"}, + {file = "pydot-3.0.3-py3-none-any.whl", hash = "sha256:9b0b3081e0bd362d0c61148da10eb1281ec80089b02a28cf06f9093843986f3d"}, + {file = "pydot-3.0.3.tar.gz", hash = "sha256:5e009d97b2fff92b7a88f09ec1fd5b163f07f3b10469c927d362471d6faa0d50"}, ] [package.dependencies] @@ -1987,13 +1992,13 @@ diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pytest" -version = "8.3.3" +version = "8.3.4" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.8" files = [ - {file = "pytest-8.3.3-py3-none-any.whl", hash = "sha256:a6853c7375b2663155079443d2e45de913a911a11d669df02a50814944db57b2"}, - {file = "pytest-8.3.3.tar.gz", hash = "sha256:70b98107bd648308a7952b06e6ca9a50bc660be218d53c257cc1fc94fda10181"}, + {file = "pytest-8.3.4-py3-none-any.whl", hash = "sha256:50e16d954148559c9a74109af1eaf0c945ba2d8f30f0a3d3335edde19788b6f6"}, + {file = "pytest-8.3.4.tar.gz", hash = "sha256:965370d062bce11e73868e0335abac31b4d3de0e82f4007408d242b4f8610761"}, ] [package.dependencies] @@ -2282,37 +2287,41 @@ test = ["asv", "numpydoc (>=1.7)", "pooch (>=1.6.0)", "pytest (>=7.0)", "pytest- [[package]] name = "scikit-learn" -version = "1.5.2" +version = "1.6.0" description = "A set of python modules for machine learning and data mining" optional = false python-versions = ">=3.9" files = [ - {file = "scikit_learn-1.5.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:299406827fb9a4f862626d0fe6c122f5f87f8910b86fe5daa4c32dcd742139b6"}, - {file = "scikit_learn-1.5.2-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:2d4cad1119c77930b235579ad0dc25e65c917e756fe80cab96aa3b9428bd3fb0"}, - {file = "scikit_learn-1.5.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:8c412ccc2ad9bf3755915e3908e677b367ebc8d010acbb3f182814524f2e5540"}, - {file = "scikit_learn-1.5.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:3a686885a4b3818d9e62904d91b57fa757fc2bed3e465c8b177be652f4dd37c8"}, - {file = "scikit_learn-1.5.2-cp310-cp310-win_amd64.whl", hash = "sha256:c15b1ca23d7c5f33cc2cb0a0d6aaacf893792271cddff0edbd6a40e8319bc113"}, - {file = "scikit_learn-1.5.2-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:03b6158efa3faaf1feea3faa884c840ebd61b6484167c711548fce208ea09445"}, - {file = "scikit_learn-1.5.2-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:1ff45e26928d3b4eb767a8f14a9a6efbf1cbff7c05d1fb0f95f211a89fd4f5de"}, - {file = "scikit_learn-1.5.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f763897fe92d0e903aa4847b0aec0e68cadfff77e8a0687cabd946c89d17e675"}, - {file = "scikit_learn-1.5.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f8b0ccd4a902836493e026c03256e8b206656f91fbcc4fde28c57a5b752561f1"}, - {file = "scikit_learn-1.5.2-cp311-cp311-win_amd64.whl", hash = "sha256:6c16d84a0d45e4894832b3c4d0bf73050939e21b99b01b6fd59cbb0cf39163b6"}, - {file = "scikit_learn-1.5.2-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:f932a02c3f4956dfb981391ab24bda1dbd90fe3d628e4b42caef3e041c67707a"}, - {file = "scikit_learn-1.5.2-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:3b923d119d65b7bd555c73be5423bf06c0105678ce7e1f558cb4b40b0a5502b1"}, - {file = "scikit_learn-1.5.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f60021ec1574e56632be2a36b946f8143bf4e5e6af4a06d85281adc22938e0dd"}, - {file = "scikit_learn-1.5.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:394397841449853c2290a32050382edaec3da89e35b3e03d6cc966aebc6a8ae6"}, - {file = "scikit_learn-1.5.2-cp312-cp312-win_amd64.whl", hash = "sha256:57cc1786cfd6bd118220a92ede80270132aa353647684efa385a74244a41e3b1"}, - {file = "scikit_learn-1.5.2-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:e9a702e2de732bbb20d3bad29ebd77fc05a6b427dc49964300340e4c9328b3f5"}, - {file = "scikit_learn-1.5.2-cp313-cp313-macosx_12_0_arm64.whl", hash = "sha256:b0768ad641981f5d3a198430a1d31c3e044ed2e8a6f22166b4d546a5116d7908"}, - {file = "scikit_learn-1.5.2-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:178ddd0a5cb0044464fc1bfc4cca5b1833bfc7bb022d70b05db8530da4bb3dd3"}, - {file = "scikit_learn-1.5.2-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f7284ade780084d94505632241bf78c44ab3b6f1e8ccab3d2af58e0e950f9c12"}, - {file = "scikit_learn-1.5.2-cp313-cp313-win_amd64.whl", hash = "sha256:b7b0f9a0b1040830d38c39b91b3a44e1b643f4b36e36567b80b7c6bd2202a27f"}, - {file = "scikit_learn-1.5.2-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:757c7d514ddb00ae249832fe87100d9c73c6ea91423802872d9e74970a0e40b9"}, - {file = "scikit_learn-1.5.2-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:52788f48b5d8bca5c0736c175fa6bdaab2ef00a8f536cda698db61bd89c551c1"}, - {file = "scikit_learn-1.5.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:643964678f4b5fbdc95cbf8aec638acc7aa70f5f79ee2cdad1eec3df4ba6ead8"}, - {file = "scikit_learn-1.5.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ca64b3089a6d9b9363cd3546f8978229dcbb737aceb2c12144ee3f70f95684b7"}, - {file = "scikit_learn-1.5.2-cp39-cp39-win_amd64.whl", hash = "sha256:3bed4909ba187aca80580fe2ef370d9180dcf18e621a27c4cf2ef10d279a7efe"}, - {file = "scikit_learn-1.5.2.tar.gz", hash = "sha256:b4237ed7b3fdd0a4882792e68ef2545d5baa50aca3bb45aa7df468138ad8f94d"}, + {file = "scikit_learn-1.6.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:366fb3fa47dce90afed3d6106183f4978d6f24cfd595c2373424171b915ee718"}, + {file = "scikit_learn-1.6.0-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:59cd96a8d9f8dfd546f5d6e9787e1b989e981388d7803abbc9efdcde61e47460"}, + {file = "scikit_learn-1.6.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:efa7a579606c73a0b3d210e33ea410ea9e1af7933fe324cb7e6fbafae4ea5948"}, + {file = "scikit_learn-1.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a46d3ca0f11a540b8eaddaf5e38172d8cd65a86cb3e3632161ec96c0cffb774c"}, + {file = "scikit_learn-1.6.0-cp310-cp310-win_amd64.whl", hash = "sha256:5be4577769c5dde6e1b53de8e6520f9b664ab5861dd57acee47ad119fd7405d6"}, + {file = "scikit_learn-1.6.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:1f50b4f24cf12a81c3c09958ae3b864d7534934ca66ded3822de4996d25d7285"}, + {file = "scikit_learn-1.6.0-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:eb9ae21f387826da14b0b9cb1034f5048ddb9182da429c689f5f4a87dc96930b"}, + {file = "scikit_learn-1.6.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:0baa91eeb8c32632628874a5c91885eaedd23b71504d24227925080da075837a"}, + {file = "scikit_learn-1.6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:3c716d13ba0a2f8762d96ff78d3e0cde90bc9c9b5c13d6ab6bb9b2d6ca6705fd"}, + {file = "scikit_learn-1.6.0-cp311-cp311-win_amd64.whl", hash = "sha256:9aafd94bafc841b626681e626be27bf1233d5a0f20f0a6fdb4bee1a1963c6643"}, + {file = "scikit_learn-1.6.0-cp312-cp312-macosx_10_13_x86_64.whl", hash = "sha256:04a5ba45c12a5ff81518aa4f1604e826a45d20e53da47b15871526cda4ff5174"}, + {file = "scikit_learn-1.6.0-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:21fadfc2ad7a1ce8bd1d90f23d17875b84ec765eecbbfc924ff11fb73db582ce"}, + {file = "scikit_learn-1.6.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:30f34bb5fde90e020653bb84dcb38b6c83f90c70680dbd8c38bd9becbad7a127"}, + {file = "scikit_learn-1.6.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:1dad624cffe3062276a0881d4e441bc9e3b19d02d17757cd6ae79a9d192a0027"}, + {file = "scikit_learn-1.6.0-cp312-cp312-win_amd64.whl", hash = "sha256:2fce7950a3fad85e0a61dc403df0f9345b53432ac0e47c50da210d22c60b6d85"}, + {file = "scikit_learn-1.6.0-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:e5453b2e87ef8accedc5a8a4e6709f887ca01896cd7cc8a174fe39bd4bb00aef"}, + {file = "scikit_learn-1.6.0-cp313-cp313-macosx_12_0_arm64.whl", hash = "sha256:5fe11794236fb83bead2af26a87ced5d26e3370b8487430818b915dafab1724e"}, + {file = "scikit_learn-1.6.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:61fe3dcec0d82ae280877a818ab652f4988371e32dd5451e75251bece79668b1"}, + {file = "scikit_learn-1.6.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b44e3a51e181933bdf9a4953cc69c6025b40d2b49e238233f149b98849beb4bf"}, + {file = "scikit_learn-1.6.0-cp313-cp313-win_amd64.whl", hash = "sha256:a17860a562bac54384454d40b3f6155200c1c737c9399e6a97962c63fce503ac"}, + {file = "scikit_learn-1.6.0-cp313-cp313t-macosx_10_13_x86_64.whl", hash = "sha256:98717d3c152f6842d36a70f21e1468fb2f1a2f8f2624d9a3f382211798516426"}, + {file = "scikit_learn-1.6.0-cp313-cp313t-macosx_12_0_arm64.whl", hash = "sha256:34e20bfac8ff0ebe0ff20fb16a4d6df5dc4cc9ce383e00c2ab67a526a3c67b18"}, + {file = "scikit_learn-1.6.0-cp313-cp313t-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:eba06d75815406091419e06dd650b91ebd1c5f836392a0d833ff36447c2b1bfa"}, + {file = "scikit_learn-1.6.0-cp313-cp313t-win_amd64.whl", hash = "sha256:b6916d1cec1ff163c7d281e699d7a6a709da2f2c5ec7b10547e08cc788ddd3ae"}, + {file = "scikit_learn-1.6.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:66b1cf721a9f07f518eb545098226796c399c64abdcbf91c2b95d625068363da"}, + {file = "scikit_learn-1.6.0-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:7b35b60cf4cd6564b636e4a40516b3c61a4fa7a8b1f7a3ce80c38ebe04750bc3"}, + {file = "scikit_learn-1.6.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a73b1c2038c93bc7f4bf21f6c9828d5116c5d2268f7a20cfbbd41d3074d52083"}, + {file = "scikit_learn-1.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5c3fa7d3dd5a0ec2d0baba0d644916fa2ab180ee37850c5d536245df916946bd"}, + {file = "scikit_learn-1.6.0-cp39-cp39-win_amd64.whl", hash = "sha256:df778486a32518cda33818b7e3ce48c78cef1d5f640a6bc9d97c6d2e71449a51"}, + {file = "scikit_learn-1.6.0.tar.gz", hash = "sha256:9d58481f9f7499dff4196927aedd4285a0baec8caa3790efbe205f13de37dd6e"}, ] [package.dependencies] @@ -2324,11 +2333,11 @@ threadpoolctl = ">=3.1.0" [package.extras] benchmark = ["matplotlib (>=3.3.4)", "memory_profiler (>=0.57.0)", "pandas (>=1.1.5)"] build = ["cython (>=3.0.10)", "meson-python (>=0.16.0)", "numpy (>=1.19.5)", "scipy (>=1.6.0)"] -docs = ["Pillow (>=7.1.2)", "matplotlib (>=3.3.4)", "memory_profiler (>=0.57.0)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "plotly (>=5.14.0)", "polars (>=0.20.30)", "pooch (>=1.6.0)", "pydata-sphinx-theme (>=0.15.3)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)", "sphinx (>=7.3.7)", "sphinx-copybutton (>=0.5.2)", "sphinx-design (>=0.5.0)", "sphinx-design (>=0.6.0)", "sphinx-gallery (>=0.16.0)", "sphinx-prompt (>=1.4.0)", "sphinx-remove-toctrees (>=1.0.0.post1)", "sphinxcontrib-sass (>=0.3.4)", "sphinxext-opengraph (>=0.9.1)"] +docs = ["Pillow (>=7.1.2)", "matplotlib (>=3.3.4)", "memory_profiler (>=0.57.0)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "plotly (>=5.14.0)", "polars (>=0.20.30)", "pooch (>=1.6.0)", "pydata-sphinx-theme (>=0.15.3)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)", "sphinx (>=7.3.7)", "sphinx-copybutton (>=0.5.2)", "sphinx-design (>=0.5.0)", "sphinx-design (>=0.6.0)", "sphinx-gallery (>=0.17.1)", "sphinx-prompt (>=1.4.0)", "sphinx-remove-toctrees (>=1.0.0.post1)", "sphinxcontrib-sass (>=0.3.4)", "sphinxext-opengraph (>=0.9.1)", "towncrier (>=24.8.0)"] examples = ["matplotlib (>=3.3.4)", "pandas (>=1.1.5)", "plotly (>=5.14.0)", "pooch (>=1.6.0)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)"] install = ["joblib (>=1.2.0)", "numpy (>=1.19.5)", "scipy (>=1.6.0)", "threadpoolctl (>=3.1.0)"] maintenance = ["conda-lock (==2.5.6)"] -tests = ["black (>=24.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.9)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "polars (>=0.20.30)", "pooch (>=1.6.0)", "pyamg (>=4.0.0)", "pyarrow (>=12.0.0)", "pytest (>=7.1.2)", "pytest-cov (>=2.9.0)", "ruff (>=0.2.1)", "scikit-image (>=0.17.2)"] +tests = ["black (>=24.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.9)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "polars (>=0.20.30)", "pooch (>=1.6.0)", "pyamg (>=4.0.0)", "pyarrow (>=12.0.0)", "pytest (>=7.1.2)", "pytest-cov (>=2.9.0)", "ruff (>=0.5.1)", "scikit-image (>=0.17.2)"] [[package]] name = "scipy" @@ -2545,13 +2554,13 @@ files = [ [[package]] name = "six" -version = "1.16.0" +version = "1.17.0" description = "Python 2 and 3 compatibility utilities" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" files = [ - {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"}, - {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"}, + {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"}, + {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"}, ] [[package]] @@ -2754,13 +2763,43 @@ zarr = ["fsspec", "zarr"] [[package]] name = "tomli" -version = "2.1.0" +version = "2.2.1" description = "A lil' TOML parser" optional = false python-versions = ">=3.8" files = [ - {file = "tomli-2.1.0-py3-none-any.whl", hash = "sha256:a5c57c3d1c56f5ccdf89f6523458f60ef716e210fc47c4cfb188c5ba473e0391"}, - {file = "tomli-2.1.0.tar.gz", hash = "sha256:3f646cae2aec94e17d04973e4249548320197cfabdf130015d023de4b74d8ab8"}, + {file = "tomli-2.2.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:678e4fa69e4575eb77d103de3df8a895e1591b48e740211bd1067378c69e8249"}, + {file = "tomli-2.2.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:023aa114dd824ade0100497eb2318602af309e5a55595f76b626d6d9f3b7b0a6"}, + {file = "tomli-2.2.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:ece47d672db52ac607a3d9599a9d48dcb2f2f735c6c2d1f34130085bb12b112a"}, + {file = "tomli-2.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6972ca9c9cc9f0acaa56a8ca1ff51e7af152a9f87fb64623e31d5c83700080ee"}, + {file = "tomli-2.2.1-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:c954d2250168d28797dd4e3ac5cf812a406cd5a92674ee4c8f123c889786aa8e"}, + {file = "tomli-2.2.1-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:8dd28b3e155b80f4d54beb40a441d366adcfe740969820caf156c019fb5c7ec4"}, + {file = "tomli-2.2.1-cp311-cp311-musllinux_1_2_i686.whl", hash = "sha256:e59e304978767a54663af13c07b3d1af22ddee3bb2fb0618ca1593e4f593a106"}, + {file = "tomli-2.2.1-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:33580bccab0338d00994d7f16f4c4ec25b776af3ffaac1ed74e0b3fc95e885a8"}, + {file = "tomli-2.2.1-cp311-cp311-win32.whl", hash = "sha256:465af0e0875402f1d226519c9904f37254b3045fc5084697cefb9bdde1ff99ff"}, + {file = "tomli-2.2.1-cp311-cp311-win_amd64.whl", hash = "sha256:2d0f2fdd22b02c6d81637a3c95f8cd77f995846af7414c5c4b8d0545afa1bc4b"}, + {file = "tomli-2.2.1-cp312-cp312-macosx_10_13_x86_64.whl", hash = "sha256:4a8f6e44de52d5e6c657c9fe83b562f5f4256d8ebbfe4ff922c495620a7f6cea"}, + {file = "tomli-2.2.1-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:8d57ca8095a641b8237d5b079147646153d22552f1c637fd3ba7f4b0b29167a8"}, + {file = "tomli-2.2.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4e340144ad7ae1533cb897d406382b4b6fede8890a03738ff1683af800d54192"}, + {file = "tomli-2.2.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:db2b95f9de79181805df90bedc5a5ab4c165e6ec3fe99f970d0e302f384ad222"}, + {file = "tomli-2.2.1-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:40741994320b232529c802f8bc86da4e1aa9f413db394617b9a256ae0f9a7f77"}, + {file = "tomli-2.2.1-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:400e720fe168c0f8521520190686ef8ef033fb19fc493da09779e592861b78c6"}, + {file = "tomli-2.2.1-cp312-cp312-musllinux_1_2_i686.whl", hash = "sha256:02abe224de6ae62c19f090f68da4e27b10af2b93213d36cf44e6e1c5abd19fdd"}, + {file = "tomli-2.2.1-cp312-cp312-musllinux_1_2_x86_64.whl", hash = "sha256:b82ebccc8c8a36f2094e969560a1b836758481f3dc360ce9a3277c65f374285e"}, + {file = "tomli-2.2.1-cp312-cp312-win32.whl", hash = "sha256:889f80ef92701b9dbb224e49ec87c645ce5df3fa2cc548664eb8a25e03127a98"}, + {file = "tomli-2.2.1-cp312-cp312-win_amd64.whl", hash = "sha256:7fc04e92e1d624a4a63c76474610238576942d6b8950a2d7f908a340494e67e4"}, + {file = "tomli-2.2.1-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:f4039b9cbc3048b2416cc57ab3bda989a6fcf9b36cf8937f01a6e731b64f80d7"}, + {file = "tomli-2.2.1-cp313-cp313-macosx_11_0_arm64.whl", hash = "sha256:286f0ca2ffeeb5b9bd4fcc8d6c330534323ec51b2f52da063b11c502da16f30c"}, + {file = "tomli-2.2.1-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a92ef1a44547e894e2a17d24e7557a5e85a9e1d0048b0b5e7541f76c5032cb13"}, + {file = "tomli-2.2.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9316dc65bed1684c9a98ee68759ceaed29d229e985297003e494aa825ebb0281"}, + {file = "tomli-2.2.1-cp313-cp313-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e85e99945e688e32d5a35c1ff38ed0b3f41f43fad8df0bdf79f72b2ba7bc5272"}, + {file = "tomli-2.2.1-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:ac065718db92ca818f8d6141b5f66369833d4a80a9d74435a268c52bdfa73140"}, + {file = "tomli-2.2.1-cp313-cp313-musllinux_1_2_i686.whl", hash = "sha256:d920f33822747519673ee656a4b6ac33e382eca9d331c87770faa3eef562aeb2"}, + {file = "tomli-2.2.1-cp313-cp313-musllinux_1_2_x86_64.whl", hash = "sha256:a198f10c4d1b1375d7687bc25294306e551bf1abfa4eace6650070a5c1ae2744"}, + {file = "tomli-2.2.1-cp313-cp313-win32.whl", hash = "sha256:d3f5614314d758649ab2ab3a62d4f2004c825922f9e370b29416484086b264ec"}, + {file = "tomli-2.2.1-cp313-cp313-win_amd64.whl", hash = "sha256:a38aa0308e754b0e3c67e344754dff64999ff9b513e691d0e786265c93583c69"}, + {file = "tomli-2.2.1-py3-none-any.whl", hash = "sha256:cb55c73c5f4408779d0cf3eef9f762b9c9f147a77de7b258bef0a5628adc85cc"}, + {file = "tomli-2.2.1.tar.gz", hash = "sha256:cd45e1dc79c835ce60f7404ec8119f2eb06d38b1deba146f07ced3bbc44505ff"}, ] [[package]] @@ -3016,5 +3055,5 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.0" -python-versions = ">=3.9,<3.12" -content-hash = "53051daa6fa890559174ca893b85e5b62667ed1b7e1c4283677deb7defa260fd" +python-versions = ">=3.9,<4.0" +content-hash = "d2390bc6c1ddf6476982ecd8b00c9fa8d996983759e170c1987549b3d2cf8006" diff --git a/pyproject.toml b/pyproject.toml index d307e36..d7960f8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,14 +13,14 @@ classifiers = [ ] [tool.poetry.dependencies] -python = ">=3.9,<3.12" +python = ">=3.9,<4.0" click = "8.1.3" contourpy = "1.0.7" matplotlib = "3.7.1" networkx = "3.1" nibabel = "5.1.0" nipype = "1.8.6" -numpy = "1.24.2" +numpy = "1.26.4" pandas = "2.0.0" patsy = "0.5.3" pillow = "9.5.0"