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MRG, STY: Highlight new contributors [skip travis] (#8269)
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‎.github/workflows/ci.yml

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jobs:
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if: "!contains(github.event.head_commit.message, '[ci skip]') && !contains(github.event.head_commit.message, '[skip ci]') && !contains(github.event.head_commit.message, '[skip github]')"
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runs-on: macos-latest
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‎doc/changes/latest.inc

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whats_new page will have a link to the function/class documentation.
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.. NOTE: there are 3 separate sections for changes, based on type:
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- "Changelog" for new features
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- "Bug" for bug fixes
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- "API" for backward-incompatible changes
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- "Enhancements" for new features
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- "Bugs" for bug fixes
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- "API changes" for backward-incompatible changes
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.. _current:
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Current (0.21.dev0)
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-------------------
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Changelog
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~~~~~~~~~
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.. |Rahul Nadkarni| replace:: **Rahul Nadkarni**
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.. |Lau Møller Andersen| replace:: **Lau Møller Andersen**
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.. |Kyle Mathewson| replace:: **Kyle Mathewson**
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.. |Jan Sedivy| replace:: **Jan Sedivy**
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.. |Johann Benerradi| replace:: **Johann Benerradi**
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.. |Martin Schulz| replace:: **Martin Schulz**
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.. |Jeroen Van Der Donckt| replace:: **Jeroen Van Der Donckt**
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.. |Simeon Wong| replace:: **Simeon Wong**
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.. |Svea Marie Meyer| replace:: **Svea Marie Meyer**
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.. |Lx37| replace:: **Lx37**
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.. |Liberty Hamilton| replace:: **Liberty Hamilton**
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.. |Steven Bierer| replace:: **Steven Bierer**
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- Add head to mri and mri to voxel space transform details to :ref:`plot_source_alignment` tutorial, by `Alex Rockhill`_
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Enhancements
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~~~~~~~~~~~~
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- Modified :meth:`mne.Epochs.pick_types` to remove dropped channel types from ``reject`` and ``flat`` dictionaries **by new contributor** |Rahul Nadkarni|_
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- Add function :func:`mne.preprocessing.regress_artifact` to remove artifacts using linear regression **by new contributor** |Kyle Mathewson|_ and `Eric Larson`_
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- Add ``sources`` and ``detectors`` options for fNIRS use of :meth:`mne.viz.plot_alignment` allowing plotting of optode locations in addition to channel midpoint ``channels`` and ``path`` between fNIRS optodes **by new contributor** |Kyle Mathewson|_
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- BrainVision data format files are now parsed for EEG impedance values in :func:`mne.io.read_raw_brainvision` and provided as a ``.impedances`` attribute of ``raw`` **by new contributor** |Jan Sedivy|_ and `Stefan Appelhoff`_
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- Add function :func:`mne.channels.combine_channels` to combine channels from Raw, Epochs, or Evoked according to ROIs (combinations including mean, median, or standard deviation; can also use a callable) **by new contributor** |Johann Benerradi|_
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- Improved documentation building instructions and execution on Windows **by new contributor** |Martin Schulz|_, `kalenkovich`_, and `Eric Larson`_
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- Modified :meth:`mne.Epochs.pick_types` to remove dropped channel types from ``reject`` and ``flat`` dictionaries by `Rahul Nadkarni`_
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- Speed up reading of annotations in EDF+ files **by new contributor** |Jeroen Van Der Donckt|_
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- Add head to mri and mri to voxel space transform details to :ref:`plot_source_alignment` tutorial, by `Alex Rockhill`_
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- Improve memory efficiency of :func:`mne.concatenate_epochs` by `Eric Larson`_
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- Add function :func:`mne.preprocessing.annotate_muscle_zscore` to annotate periods with muscle artifacts. by `Adonay Nunes`_
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- Add function :func:`mne.preprocessing.regress_artifact` to remove artifacts using linear regression by `Kyle Mathewson`_ and `Eric Larson`_
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- Add :func:`mne.stats.ttest_ind_no_p` to mirror :func:`mne.stats.ttest_1samp_no_p` with hat correction by `Eric Larson`_
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- Add `mne.stats.combine_adjacency` to combine adjacency matrices for independent data dimensions to enable things like spatio-temporal-time-frequency clustering in `mne.stats.permutation_cluster_test` by `Eric Larson`_
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- Add ``axes`` argument to :func:`mne.viz.plot_evoked_white`, :meth:`mne.Evoked.plot_white`, and :func:`mne.viz.plot_snr_estimate` by `Eric Larson`_
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- Add ``sources`` and ``detectors`` options for fNIRS use of :meth:`mne.viz.plot_alignment` allowing plotting of optode locations in addition to channel midpoint ``channels`` and ``path`` between fNIRS optodes by `Kyle Mathewson`_
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- Change default to ``surfaces='auto'`` from ``surfaces='head'`` to allow :func:`mne.viz.plot_alignment` to work when just passing a :class:`mne.Info` as ``plot_alignment(info)`` by `Eric Larson`_
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- Add ECoG misc EDF dataset to the :ref:`tut_working_with_ecog` tutorial to show snapshots of time-frequency activity by `Adam Li`_
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- :func:`mne.preprocessing.find_bad_channels_maxwell` now automatically applies a low-pass filter before running bad channel detection. This can be disabled, restoring previous behavior by `Richard Höchenberger`_
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- BrainVision data format files are now parsed for EEG impedance values in :func:`mne.io.read_raw_brainvision` and provided as a ``.impedances`` attribute of ``raw`` by `Stefan Appelhoff`_ and `Jan Sedivy`_
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- Add ``proj='reconstruct'`` to :meth:`mne.Evoked.plot` and related functions to apply projectors and then undo the signal bias using field mapping by `Eric Larson`_
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- Add writing BEM surfaces and solutions in H5 format in :func:`mne.write_bem_surfaces` and :func:`mne.write_bem_solution` by `Eric Larson`_
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- :class:`mne.Report` now can add topomaps of SSP projectors to the generated report. This behavior can be toggled via the new ``projs`` argument by `Richard Höchenberger`_
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- Add function :func:`mne.channels.combine_channels` to combine channels from Raw, Epochs, or Evoked according to ROIs (combinations including mean, median, or standard deviation; can also use a callable) by `Johann Benerradi`_
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- Improved documentation building instructions and execution on Windows by `Eric Larson`_, `kalenkovich`_ and `Martin Schulz`_
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- When passing a list of `~mne.Evoked` objects to `~mne.viz.plot_compare_evokeds`, each evoked's ``.comment`` attribute will be used to label the trace. If ``.comment`` is empty, a 1-based index is assigned as the label by `Richard Höchenberger`_
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- Speed up :func:`mne.stats.summarize_clusters_stc` using Numba by `Yu-Han Luo`_
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- Add memory size information to the ``repr`` of :class:`mne.SourceSpaces` and :class:`mne.SourceEstimate` and related classes by `Eric Larson`_
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- Speed up reading of annotations in EDF+ files by `Jeroen Van Der Donckt`_
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- Add reader for Persyst (.lay + .dat format) data in :func:`mne.io.read_raw_persyst` by `Adam Li`_
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- Use PyVista as the default backend for 3D visualization instead of Mayavi by `Guillaume Favelier`_
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- `~mne.Evoked` has gained ``tmin`` and ``tmax`` attributes for more consistency with `~mne.Epochs` by `Richard Höchenberger`_
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~~~
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~~~~
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- Fix bug with non-preloaded data when using ``raw.apply_proj().load_data().get_data()`` where projectors were not applied by `Eric Larson`_
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- Fix bug for writing and reading complex evoked data modifying :func:`mne.write_evokeds` and :func:`mne.read_evokeds` **by new contributor** |Lau Møller Andersen|_
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- Fix bug by adding error message when trying to save complex stc data in a non.-h5 format :meth:`mne.VolSourceEstimate.save` **by new contributor** |Lau Møller Andersen|_
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- Fix bug with logging in :meth:`mne.io.Raw.set_eeg_reference` and related functions **by new contributor** |Simeon Wong|_
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- Fix bug for writing and reading complex evoked data modifying :func:`mne.write_evokeds` and :func:`mne.read_evokeds` by `Lau Møller Andersen`_
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- Fix bug with :func:`mne.io.read_raw_gdf` where birthdays were not parsed properly, leading to an error **by new contributor** |Svea Marie Meyer|_
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- Fix bug by adding error message when trying to save complex stc data in a non.-h5 format :meth:`mne.VolSourceEstimate.save` by `Lau Møller Andersen`_
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- Fix bug with :func:`mne.io.read_raw_edf` where recording ID was not read properly for non-ASCII characters **by new contributor** |Lx37|_
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- Fix bug in :func:`mne.set_eeg_reference` and related functions to set ``info['custom_ref_applied']`` to ``True`` for 'ecog' and 'seeg' channels in addition to 'eeg' **by new contributor** |Liberty Hamilton|_
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- Fix bug with :func:`mne.chpi.compute_chpi_amplitudes` and :func:`mne.chpi.filter_chpi` to optimize time window length **by new contributor** |Steven Bierer|_
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- Fix bug with :func:`mne.preprocessing.ICA.find_bads_eog` when more than one EOG components are present by `Christian O'Reilly`_
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- Fix bug with non-preloaded data when using ``raw.apply_proj().load_data().get_data()`` where projectors were not applied by `Eric Larson`_
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- Fix bug to permit :meth:`stc.project('nn', src) <mne.VectorSourceEstimate.project>` to be applied after ``stc`` was restricted to an :class:`mne.Label` by `Luke Bloy`_
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- Fix bug with :func:`mne.io.Raw.set_meas_date` to support setting ``meas_date`` to ``None``, by `Luke Bloy`_
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- Fix bug with `mne.SourceSpaces.export_volume` with ``use_lut=False`` where no values were written by `Eric Larson`_
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- Fix bug with logging in :meth:`mne.io.Raw.set_eeg_reference` and related functions by `Simeon Wong`_
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- Fix bug with :func:`mne.preprocessing.annotate_movement` where bad data segments, specified in ``raw.annotations``, would be handled incorrectly by `Luke Bloy`_
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- Fix bug with :func:`mne.compute_source_morph` when more than one volume source space was present (e.g., when using labels) where only the first label would be interpolated when ``mri_resolution=True`` by `Eric Larson`_
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- Fix bug with :func:`mne.epochs.average_movements` where epoch weights were computed using all basis vectors instead of the internal basis only by `Eric Larson`_
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- Fix bug with :func:`mne.io.read_raw_gdf` where birthdays were not parsed properly, leading to an error by `Svea Marie Meyer`_
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- Fix bug with :func:`mne.io.read_raw_edf` where recording ID was not read properly for non-ASCII characters by `Lx37`_
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- Fix bug with :func:`mne.get_volume_labels_from_aseg` where the returned labels were alphabetical instead of reflecting their volumetric ID-based order by `Eric Larson`_
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- Fix bug with :func:`mne.preprocessing.find_bad_channels_maxwell` where good data of exactly ``step`` duration would lead to an error by `Eric Larson`_
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- Fix bug with :func:`mne.events_from_annotations(raw.annotations) <mne.events_from_annotations>` when ``orig_time`` of annotations is None and ``raw.first_time > 0``, by `Alex Gramfort`_
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- Fix bug in :func:`mne.set_eeg_reference` and related functions to set ``info['custom_ref_applied']`` to ``True`` for 'ecog' and 'seeg' channels in addition to 'eeg' by `Liberty Hamilton`_
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- Fix bug with :func:`mne.chpi.compute_chpi_amplitudes` and :func:`mne.chpi.filter_chpi` to optimize time window length by `Steven Bierer`_
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~~~
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~~~~~~~~~~~
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- Python 3.5 is no longer supported, Python 3.6+ is required, by `Eric Larson`_
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