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List of files organized based on their functionality {#filelist}

Prefix keys:

  • [AR]: Abtin Rahimian
  • [DM]: Dhairya Malhotra
  • [R] : Reviewed

Device:

  • CPUKernels.cc
  • CPUKernels.h
  • StokesTest.cc
  • CudaApiGlobals.cc
  • CudaApiGlobals.h
  • CudaKernels.cu
  • CudaKernels.h
  • transpose_kernel.cu
  • transpose_kernel.h
  • transpose_wrapper.cu
  • [R] Device.h
  • [R] DeviceCPU.cc
  • [AR] DeviceGPU.cc
  • [R] DeviceTest.cc
  • [R] DeviceTest.h

Basic:

  • [R] Enums.cc
  • [R] Enums.h
  • [R] EnumsTest.cc
  • [R] Error.cc
  • [R] Error.h
  • [R] ErrorTest.cc
  • [R] Logger.cc
  • [R] Logger.h
  • [R] LoggerTest.cc
  • [R] Array.cc
  • [R] Array.h
  • [R] ArrayTest.cc
  • [R] Scalars.cc
  • [R] Scalars.h
  • [R] ScalarsTest.cc
  • [R] ScalarContainerTest.h
  • [R] Vectors.cc
  • [R] Vectors.h
  • [R] VectorsTest.h
  • [R] VectorsTest.cc
  • [AR] SHTMats.cc
  • [AR] SHTMats.h
  • [AR] SHTrans.cc
  • [AR] SHTrans.h
  • [AR] SHTransTest.cc
  • [AR] OperatorsMats.cc
  • [AR] OperatorsMats.h

Core:

  • EvalVelocity.cc
  • EvalVelocity.h
  • EvalVelocityTest.cc
  • EvolveSurface.cc
  • EvolveSurface.h
  • EvolveSurfaceTest.cc
  • EvolveSurfaceTestMultThread.cc
  • InterfacialForce.cc
  • InterfacialForce.h
  • InterfacialVelocity.cc
  • InterfacialVelocity.h
  • MovePole.cc
  • MovePole.h
  • MovePoleTest.cc
  • Parameters.cc
  • Parameters.h
  • [DM] Repartition.h //repartition based on FMM box, random handling of cut vesicles, could be the same class as interaction(). make abstract and subclass
  • [DM] Repartition.cc
  • [DM] RepartitionTest.cc
  • Surface.cc
  • Surface.h
  • SurfaceParams.cc
  • SurfaceParams.h
  • SurfaceTest.cc
  • TimeStepperMult.h
  • [DM] VesInteraction.h //add single and double layer interface;imporve interface. Rename it to InteractionInterface() (abstract?) and subclass this for pvfmm
  • [DM] VesInteraction.cc

Util:

  • BenchmarkInterfacialVel.cc
  • BgFlow.cc
  • BgFlow.h
  • BgFlowBase.h
  • BiCGStab.cc
  • BiCGStab.h
  • BiCGStabTest.cc
  • BlasToyTest.cc
  • HasAtlas.h
  • HasBlas.h
  • HasMkl.h
  • VesBlas.h
  • vesblas_cygwin.h
  • CurvatureFlow.h
  • DataIO.cc
  • DataIO.h
  • DataIO_templates.cc
  • GLIntegrator.cc
  • GLIntegrator.h
  • HelperFuns.cc
  • HelperFuns.h
  • Monitor.cc
  • Monitor.h
  • ParserLite.cc
  • ParserLite.h
  • ParsingTest.cc
  • ParsingTestInput.in
  • anyoption.cc
  • anyoption.h

Comments

  1. Should we have one MPI per device? I think Yes.
  2. For both Repartition and VesInteraction add dummy and direct evaluation classes