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Re-submission of MAPpoly package

This is a re-submission of the MAPpoly package. This version includes changes to address the issues that led to its archival on CRAN, specifically the failure in installing the package using --use-LTO. We have made corrections to ensure compatibility and successful installation with --use-LTO.

Changes in this submission include:

  • Addressed the --use-LTO installation failure issue

Thank you for reviewing our re-submission!

Test environments

  • local R installation (macOS Sonoma 14.3.1), R 4.3.3

    • Apple clang version 14.0.0 (clang-1400.0.29.202)
    • GNU Fortran (GCC) 12.2.0

  • local R installation (Ubuntu 22.04), R 4.3.3

    • gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0

    • GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0

    • Compiled using the following configuration:

      ./configure
      --prefix=/opt/R/${R_VERSION}
      --enable-R-shlib
      --enable-memory-profiling
      --with-blas
      --with-lapack
      --enable-lto=R

    And installed using R CMD INSTALL --use-LTO mappoly_0.4.1.tar.gz

  • local R installation (Ubuntu 22.04), R devel

    • Intel(R) oneAPI DPC++/C++ Compiler 2024.0.2 (2024.0.2.20231213)
    • ifx (IFX) 2024.0.2 20231213

  • Win-builder (release and devel)

R CMD check results

0 errors | 0 warnings | 2 notes

  • on local macOS: R 4.3.3

    • installed size is 8.2Mb sub-directories of 1Mb or more:
      • R: 2.8Mb
      • data: 3.0Mb
    • GNU make is a SystemRequirements.

  • Checked with --use-LTO flag: Installation successful without any errors or warnings.

Downstream dependencies

We checked 3 reverse dependencies (3 from CRAN + 0 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.

  • We saw 0 new problems
  • We failed to check 0 packages