2023-06-04-zhang23a.md

title	booktitle	year	volume	series	month	publisher	pdf	url	abstract	layout	issn	id	tex_title	firstpage	lastpage	page	order	cycles	bibtex_editor	editor	bibtex_author	author	date	address	container-title	genre	issued	extras
MT2: Multi-task Mean Teacher for Semi-Supervised Cell Segmentation	Proceedings of the NeurIPS Challenge on Cell Segmentation in Muliti-modality Microscopy Images	2022	212	Proceedings of Machine Learning Research	0	PMLR	https://proceedings.mlr.press/v212/zhang23a/zhang23a.pdf	https://proceedings.mlr.press/212/zhang22.html	Cell segmentation is significant for downstream single-cell analysis in biological and biomedical research. Recently, image segmentation methods based on supervised learning have achieved promising results. However, most of them rely on intensive manual annotations, which are extremely time-consuming and expensive for cell segmentation. In addition, existing methods are often trained for a specific modality with poor generalization ability. In this paper, a novel semi-supervised cell segmentation method is proposed to segment microscopy images from multiple modalities. Specifically, Mean Teacher model is introduced to a multi-task learning framework, named Multi-task Mean Teacher (MT$^{2}$), in which both the classification and the regression heads are utilized to improve the prediction performance. Moreover, new data augmentation and multi-scale inference strategies are presented to enhance the robustness and generalization ability. For the quantitative evaluation on the Tuning Set of NeurIPS 2022 Cell Segmentation Competition, our method achieves the F1 Score of 0.8690, which demonstrates the effectiveness of the proposed semi-supervised learning method. Code is available at \url{https://github.com/djh-dzxw/MT2}	inproceedings	2640-3498	zhang23a	MT2: Multi-task Mean Teacher for Semi-Supervised Cell Segmentation	1	13	1-13	1	false	Ma, Jun and Xie, Ronald and Gupta, Anubha and Guilherme de Almeida, Jos\'e and Bader, Gary D. and Wang, Bo	given family Jun Ma given family Ronald Xie given family Anubha Gupta given family prefix José Almeida Guilherme de given family Gary D. Bader given family Bo Wang	Zhang, Binyu and Dong, Junhao and Zhao, Zhicheng and Meng, Zhu and Su, Fei	given family Binyu Zhang given family Junhao Dong given family Zhicheng Zhao given family Zhu Meng given family Fei Su	2023-06-04		Proceedings of The Cell Segmentation Challenge in Multi-modality High-Resolution Microscopy Images	inproceedings	date-parts 2023 6 4