2023-06-04-wang23a.md

title	booktitle	year	volume	series	month	publisher	pdf	url	abstract	layout	issn	id	tex_title	firstpage	lastpage	page	order	cycles	bibtex_editor	editor	bibtex_author	author	date	address	container-title	genre	issued	extras
Semi-Supervised Cell Instance Segmentation for Multi-Modality Microscope Images	Proceedings of the NeurIPS Challenge on Cell Segmentation in Muliti-modality Microscopy Images	2022	212	Proceedings of Machine Learning Research	0	PMLR	https://proceedings.mlr.press/v212/wang23a/wang23a.pdf	https://proceedings.mlr.press/212/wang22.html	Many clinical and biological tasks depend on accurate cell instance segmentation. Currently, the rapid development of deep learning realizes the automation of cell segmentation, which significantly decreases the workload of clinicians and researchers. However, most existing cell segmentation frameworks are fully supervised and modality-specific. Towards this end, this paper proposes a semi-supervised cell instance segmentation framework for multi-modality microscope images. Firstly, $K$-Means clustering is utilized to discriminate the image modality. Then, for phase contrast and differential interference contrast images, Cellpose is adopted. For brightfield images, we subdivide them into two sub-categories according to the cell diameter by $K$-Means and optimize a U-Net for the large diameter group. For fluorescence images, we propose a semi-supervised learning strategy using CDNet. The leaderboard shows that our proposed framework reaches an F1 score of 0.8428 on the tuning set, which ranks 6th among all teams.	inproceedings	2640-3498	wang23a	Semi-Supervised Cell Instance Segmentation for Multi-Modality Microscope Images	1	11	1-11	1	false	Ma, Jun and Xie, Ronald and Gupta, Anubha and Guilherme de Almeida, Jos\'e and Bader, Gary D. and Wang, Bo	given family Jun Ma given family Ronald Xie given family Anubha Gupta given family prefix José Almeida Guilherme de given family Gary D. Bader given family Bo Wang	Wang, Ziyue and Fang, Zijie and Chen, Yang and Yang, Zexi and Liu, Xinhao and Zhang, Yongbing	given family Ziyue Wang given family Zijie Fang given family Yang Chen given family Zexi Yang given family Xinhao Liu given family Yongbing Zhang	2023-06-04		Proceedings of The Cell Segmentation Challenge in Multi-modality High-Resolution Microscopy Images	inproceedings	date-parts 2023 6 4