docker-compose.yml

version: "3.3"
services:
  prefect:
    image: prefecthq/prefect:2.14-python3.11
    command: prefect server start
    environment:
      - PREFECT_SERVER_API_HOST=0.0.0.0
      - PREFECT_API_DATABASE_CONNECTION_URL=postgresql+asyncpg://${PREFECT_DB_USER}:${PREFECT_DB_PW}@prefect_db:5432/${PREFECT_DB_NAME} # Needed if using postgres and not sqlite
      # - PREFECT_UI_API_URL=https://localhost/api. needed if nginx is handling ssl termination
      - PREFECT_LOGGING_LEVEL=DEBUG
    ports:
      - 4200:4200
    depends_on:
      - prefect_db
    networks:
      mle_net:


  prefect_db:
    image: postgres:14.5-alpine
    environment:
      - POSTGRES_USER=${PREFECT_DB_USER}
      - POSTGRES_PASSWORD=${PREFECT_DB_PW}
      - POSTGRES_DB=${PREFECT_DB_NAME}
    volumes:
      - ./data/prefect_db:/var/lib/postgresql/data:rw
    restart: unless-stopped
    networks:
      mle_net:


  tiled:
    # see the file ./tiled/deploy/config.yml for detailed configuration of tiled
    image: ghcr.io/bluesky/tiled:v0.1.0a114
    ports:
      - "8000:8000"
    environment:
      - TILED_DB_USER=${TILED_DB_USER}
      - TILED_DB_PW=${TILED_DB_PW}
      - TILED_DB_NAME=${TILED_DB_NAME}
      - TILED_DB_SERVER=${TILED_DB_SERVER}
      - TILED_SINGLE_USER_API_KEY=${TILED_SINGLE_USER_API_KEY}
    volumes:
      - ./tiled/deploy:/deploy
      - ./data/tiled_storage:/tiled_storage
    depends_on:
      - tiled_db
    networks:
      mle_net:


  tiled_db:
    image: postgres:14.5-alpine
    environment:
      - POSTGRES_USER=${TILED_DB_USER}
      - POSTGRES_PASSWORD=${TILED_DB_PW}
      - POSTGRES_DB=${TILED_DB_NAME}
    volumes:
      - ./data/tiled_db:/var/lib/postgresql/data:rw
      - ./data/tiled_storage:/tiled_storage
    restart: unless-stopped
    networks:
      mle_net:


  tiled_ingest:
    build:
      context: ./mlex_tiled_ingest
    environment:
      - TILED_DB_USER=${TILED_DB_USER}
      - TILED_DB_PW=${TILED_DB_PW}
      - TILED_DB_NAME=${TILED_DB_NAME}
      - TILED_DB_SERVER=${TILED_DB_SERVER}
      - TILED_INGEST_TILED_CONFIG_PATH=${TILED_INGEST_TILED_CONFIG_PATH}
      - TILED_INGEST_RMQ_HOST=${TILED_INGEST_RMQ_HOST}
      - TILED_INGEST_RMQ_USER=${TILED_INGEST_RMQ_USER}
      - TILED_INGEST_RMQ_PW=${TILED_INGEST_RMQ_PW}

    volumes:
      - ./mlex_tiled_ingest:/app
      - ./tiled/deploy:/deploy
      - ./data/tiled_storage:/tiled_storage

  mlex_segmentation:
    image: ghcr.io/mlexchange/mlex_highres_segmentation:main
    environment:
      - DATA_TILED_URI=http://tiled:8000/api/v1/metadata/recons
      - DATA_TILED_API_KEY=${TILED_API_KEY}
      - MASK_TILED_URI=http://tiled:8000/
      - MASK_TILED_API_KEY=${TILED_API_KEY}
      - SEG_TILED_URI=http://tiled:8000/
      - SEG_TILED_API_KEY=${TILED_API_KEY}
      - USER_NAME=${MLEX_SEGM_USER}
      - USER_PASSWORD=${MLEX_SEGM_PW}
      - RESULTS_DIR=${RESULTS_DIR}
      - PREFECT_API_URL=http://prefect:4200/api
      - FLOW_NAME=${FLOW_NAME}
      - TIMEZONE=${TIMEZONE}
    ports:
      - 8075:8075
    # depends_on:
    #   - tiled
    # Intermediate solution restarting frontend on failure due to connection issues
    restart: always
    networks:
      mle_net:


networks:
  mle_net:
    driver: bridge