From b1fb027b3f8f73f7b08fd86e786ae7fcfd72f573 Mon Sep 17 00:00:00 2001 From: Clea Aumont Date: Wed, 8 Nov 2023 17:10:00 -0500 Subject: [PATCH 1/6] adding basic functionality to filter results --- callbacks/image_viewer.py | 13 ++++++++++--- exported_annotation_data.json | 1 + utils/data_utils.py | 11 +++++++++++ 3 files changed, 22 insertions(+), 3 deletions(-) create mode 100644 exported_annotation_data.json diff --git a/callbacks/image_viewer.py b/callbacks/image_viewer.py index eb9abe0..42fd002 100644 --- a/callbacks/image_viewer.py +++ b/callbacks/image_viewer.py @@ -21,7 +21,11 @@ from plotly.subplots import make_subplots from constants import ANNOT_ICONS, ANNOT_NOTIFICATION_MSGS, KEYBINDS -from utils.data_utils import get_data_sequence_by_name, get_data_shape_by_name +from utils.data_utils import ( + get_data_sequence_by_name, + get_data_shape_by_name, + get_annotated_segmented_results, +) from utils.plot_utils import ( create_viewfinder, downscale_view, @@ -120,11 +124,14 @@ def render_image( and ctx.triggered_id == "show-result-overlay-toggle" ): raise PreventUpdate - result = get_data_sequence_by_name(seg_result_selection)[image_idx] + if str(image_idx + 1) in get_annotated_segmented_results(): + result = get_data_sequence_by_name(seg_result_selection)[image_idx] + else: + result = None else: tf = np.zeros((500, 500)) fig = px.imshow(tf, binary_string=True) - if toggle_seg_result: + if toggle_seg_result and result is not None: unique_segmentation_values = np.unique(result) normalized_range = np.linspace( 0, 1, len(unique_segmentation_values) diff --git a/exported_annotation_data.json b/exported_annotation_data.json new file mode 100644 index 0000000..ae714bb --- /dev/null +++ b/exported_annotation_data.json @@ -0,0 +1 @@ +{"user": "user1", "source": "rec20190524_085542_clay_testZMQ_8bit", "time": "2023-11-03-01:13:15", "data": "[{\"annotations\": {\"10\": [{\"editable\": true, \"visible\": true, \"showlegend\": false, \"legend\": \"legend\", \"legendgroup\": 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\"color\": \"#ff1472\", \"label\": \"Clay Anomalies\", \"is_visible\": true, \"class_id\": 4}]"} \ No newline at end of file diff --git a/utils/data_utils.py b/utils/data_utils.py index ca539ec..8fa80a9 100644 --- a/utils/data_utils.py +++ b/utils/data_utils.py @@ -195,3 +195,14 @@ def get_data_shape_by_name(project_name): if project_container: return project_container.shape return None + + +def get_annotated_segmented_results(json_file_path="exported_annotation_data.json"): + annotated_slices = [] + with open(json_file_path, "r") as f: + for line in f: + if line.strip(): + json_data = json.loads(line) + json_data["data"] = json.loads(json_data["data"]) + annotated_slices = list(json_data["data"][0]["annotations"].keys()) + return annotated_slices From a37c35ddfe3f79b20d3176e083272820d5da36ec Mon Sep 17 00:00:00 2001 From: Clea Aumont Date: Wed, 8 Nov 2023 17:12:09 -0500 Subject: [PATCH 2/6] isort --- callbacks/image_viewer.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/callbacks/image_viewer.py b/callbacks/image_viewer.py index 42fd002..82277ed 100644 --- a/callbacks/image_viewer.py +++ b/callbacks/image_viewer.py @@ -22,9 +22,9 @@ from constants import ANNOT_ICONS, ANNOT_NOTIFICATION_MSGS, KEYBINDS from utils.data_utils import ( + get_annotated_segmented_results, get_data_sequence_by_name, get_data_shape_by_name, - get_annotated_segmented_results, ) from utils.plot_utils import ( create_viewfinder, From 66f89bf89eb7d6781bd05f290019f375e90f2c69 Mon Sep 17 00:00:00 2001 From: Clea Aumont Date: Fri, 10 Nov 2023 09:50:41 -0500 Subject: [PATCH 3/6] run isort --- callbacks/image_viewer.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/callbacks/image_viewer.py b/callbacks/image_viewer.py index 82277ed..d2c3493 100644 --- a/callbacks/image_viewer.py +++ b/callbacks/image_viewer.py @@ -22,9 +22,9 @@ from constants import ANNOT_ICONS, ANNOT_NOTIFICATION_MSGS, KEYBINDS from utils.data_utils import ( - get_annotated_segmented_results, get_data_sequence_by_name, get_data_shape_by_name, + get_annotated_segmented_results, ) from utils.plot_utils import ( create_viewfinder, @@ -49,8 +49,8 @@ ) def hide_show_segmentation_overlay(toggle_seg_result, opacity): """ - This callback is responsible for hiding or showing the segmentation results overaly - by making the opacity 0 (given that this iamge has already been rendered in the render_image callback). + This callback is responsible for hiding or showing the segmentation results overlay + by making the opacity 0 (given that this image has already been rendered in the render_image callback). This callback also adjusts the opactiy of the results based on the opacity slider. """ fig = Patch() From cc9aa5f64b71dd5a30511c9966b1db18ead59cf2 Mon Sep 17 00:00:00 2001 From: Clea Aumont Date: Fri, 10 Nov 2023 09:52:43 -0500 Subject: [PATCH 4/6] run isort --- callbacks/image_viewer.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/callbacks/image_viewer.py b/callbacks/image_viewer.py index d2c3493..3af77ae 100644 --- a/callbacks/image_viewer.py +++ b/callbacks/image_viewer.py @@ -22,9 +22,9 @@ from constants import ANNOT_ICONS, ANNOT_NOTIFICATION_MSGS, KEYBINDS from utils.data_utils import ( + get_annotated_segmented_results, get_data_sequence_by_name, get_data_shape_by_name, - get_annotated_segmented_results, ) from utils.plot_utils import ( create_viewfinder, From 5146466b18dbec462f8e09b23d801b8cb6917ff6 Mon Sep 17 00:00:00 2001 From: Clea Aumont Date: Wed, 15 Nov 2023 16:54:00 +0100 Subject: [PATCH 5/6] wip: new apparoach for laoding spinner --- callbacks/control_bar.py | 2 -- callbacks/image_viewer.py | 58 ++++++++++++++++++++++++++++++++++---- components/control_bar.py | 10 ++++++- components/image_viewer.py | 38 ++++++++++++------------- 4 files changed, 81 insertions(+), 27 deletions(-) diff --git a/callbacks/control_bar.py b/callbacks/control_bar.py index 8c938da..5e26b32 100644 --- a/callbacks/control_bar.py +++ b/callbacks/control_bar.py @@ -161,7 +161,6 @@ def update_selected_class_style(selected_class, all_annotation_classes): Input("pan-and-zoom", "n_clicks"), Input("keybind-event-listener", "event"), State("annotation-store", "data"), - State("image-viewer-loading", "zIndex"), State("generate-annotation-class-modal", "opened"), State({"type": "edit-annotation-class-modal", "index": ALL}, "opened"), prevent_initial_call=True, @@ -173,7 +172,6 @@ def annotation_mode( pan_and_zoom, keybind_event_listener, annotation_store, - figure_overlay_z_index, generate_modal_opened, edit_modal_opened, ): diff --git a/callbacks/image_viewer.py b/callbacks/image_viewer.py index 3af77ae..870d6ab 100644 --- a/callbacks/image_viewer.py +++ b/callbacks/image_viewer.py @@ -68,6 +68,7 @@ def hide_show_segmentation_overlay(toggle_seg_result, opacity): Output("annotated-slices-selector", "value"), Output("image-selection-slider", "value", allow_duplicate=True), Output("notifications-container", "children", allow_duplicate=True), + Output("image-viewer-loading", "className"), Input("image-selection-slider", "value"), Input("show-result-overlay-toggle", "checked"), Input("annotated-slices-selector", "value"), @@ -102,8 +103,9 @@ def render_image( if ctx.triggered_id == "annotated-slices-selector": reset_slice_selection = None if image_idx == slice_selection: - ret_values = [dash.no_update] * 7 + ret_values = [dash.no_update] * 8 ret_values[4] = reset_slice_selection + ret_values[7] = "hidden" return ret_values image_idx = slice_selection update_slider_value = slice_selection @@ -123,7 +125,7 @@ def render_image( len(fig["data"]) == 2 and ctx.triggered_id == "show-result-overlay-toggle" ): - raise PreventUpdate + return [dash.no_update] * 7 + ["hidden"] if str(image_idx + 1) in get_annotated_segmented_results(): result = get_data_sequence_by_name(seg_result_selection)[image_idx] else: @@ -216,6 +218,7 @@ def render_image( reset_slice_selection, update_slider_value, notification, + "hidden", ) @@ -332,14 +335,59 @@ def update_viewfinder(relayout_data, annotation_store): clientside_callback( """ - function EnableImageLoadingOverlay(zIndexSlider,zIndexToggle,zIndexSliceSelector) { - return 9999; + function EnableImageLoadingOverlay(a) { + const ctx = window.dash_clientside.callback_context; + console.log(ctx) + if (a == null){return "hidden"} + return "visible"; } """, - Output("image-viewer-loading", "zIndex"), + Output("image-viewer-loading", "className", allow_duplicate=True), Input("image-selection-slider", "value"), + prevent_initial_call=True, +) +clientside_callback( + """ + function EnableImageLoadingOverlay(a) { + if (a == null){return "hidden"} + return "visible"; + } + """, + Output("image-viewer-loading", "className", allow_duplicate=True), Input("show-result-overlay-toggle", "checked"), + prevent_initial_call=True, +) +clientside_callback( + """ + function EnableImageLoadingOverlay(a) { + if (a == null){return "hidden"} + return "visible"; + } + """, + Output("image-viewer-loading", "className", allow_duplicate=True), Input("annotated-slices-selector", "value"), + prevent_initial_call=True, +) +clientside_callback( + """ + function EnableImageLoadingOverlay(a) { + if (a == null){return "hidden"} + return "visible"; + } + """, + Output("image-viewer-loading", "className", allow_duplicate=True), + Input("project-name-src", "value"), + prevent_initial_call=True, +) +clientside_callback( + """ + function DisableImageLoadingOverlay(fig) { + return "hidden"; + } + """, + Output("image-viewer-loading", "className", allow_duplicate=True), + Input("image-viewer", "figure"), + prevent_initial_call=True, ) diff --git a/components/control_bar.py b/components/control_bar.py index acbd5c4..4249a19 100644 --- a/components/control_bar.py +++ b/components/control_bar.py @@ -3,7 +3,7 @@ from dash import dcc, html from dash_extensions import EventListener from dash_iconify import DashIconify - +import dash_core_components as dcc from components.annotation_class import annotation_class_item from constants import ANNOT_ICONS, KEYBINDS from utils import data_utils @@ -164,6 +164,14 @@ def layout(): ), ), dmc.Space(h=10), + dmc.Center( + dmc.Loader( + id="image-viewer-loading", + style={"height": "20px", "width": "90px"}, + className="hidden", + ), + pt=20, + ), ], ), _accordion_item( diff --git a/components/image_viewer.py b/components/image_viewer.py index ce06516..5f7cc45 100644 --- a/components/image_viewer.py +++ b/components/image_viewer.py @@ -22,26 +22,26 @@ def layout(): dcc.Store("image-metadata", data={"name": None}), dcc.Store("screen-size"), dcc.Location("url"), - dmc.LoadingOverlay( - id="image-viewer-loading", - overlayOpacity=0, - loaderProps=dict( - color=dmc.theme.DEFAULT_COLORS["blue"][6], variant="bars" - ), - children=[ - dcc.Graph( - id="image-viewer", - config=FIGURE_CONFIG, - figure=blank_fig(), - style={ - "width": "100vw", - "height": "100vh", - "position": "fixed", - }, - ), - ], - style={"height": "100vh", "width": "100vw"}, + # dmc.LoadingOverlay( + # id="image-viewer-loading", + # overlayOpacity=0, + # loaderProps=dict( + # color=dmc.theme.DEFAULT_COLORS["blue"][6], variant="bars" + # ), + # children=[ + dcc.Graph( + id="image-viewer", + config=FIGURE_CONFIG, + figure=blank_fig(), + style={ + "width": "100vw", + "height": "100vh", + "position": "fixed", + }, ), + # ], + # style={"height": "100vh", "width": "100vw"}, + # ), dcc.Graph( id="image-viewfinder", figure=blank_fig(), From 695fa876961d20521ae07bd58d10574f8bce6543 Mon Sep 17 00:00:00 2001 From: Clea Aumont Date: Thu, 16 Nov 2023 09:39:46 +0100 Subject: [PATCH 6/6] remove comments --- components/image_viewer.py | 10 ---------- 1 file changed, 10 deletions(-) diff --git a/components/image_viewer.py b/components/image_viewer.py index 5f7cc45..8b82c78 100644 --- a/components/image_viewer.py +++ b/components/image_viewer.py @@ -22,13 +22,6 @@ def layout(): dcc.Store("image-metadata", data={"name": None}), dcc.Store("screen-size"), dcc.Location("url"), - # dmc.LoadingOverlay( - # id="image-viewer-loading", - # overlayOpacity=0, - # loaderProps=dict( - # color=dmc.theme.DEFAULT_COLORS["blue"][6], variant="bars" - # ), - # children=[ dcc.Graph( id="image-viewer", config=FIGURE_CONFIG, @@ -39,9 +32,6 @@ def layout(): "position": "fixed", }, ), - # ], - # style={"height": "100vh", "width": "100vw"}, - # ), dcc.Graph( id="image-viewfinder", figure=blank_fig(),