From 614a6a4318fb7ee2415f079ed0b84e6cf213826c Mon Sep 17 00:00:00 2001
From: mkuzak <mateusz.kuzak@gmail.com>
Date: Mon, 8 Sep 2014 10:12:07 +0200
Subject: [PATCH] Add feature properties.

---
 accession_locations.json | 2 +-
 versailes2geojson.py     | 6 +++++-
 2 files changed, 6 insertions(+), 2 deletions(-)

diff --git a/accession_locations.json b/accession_locations.json
index 73ed8b9..d2bb2b1 100644
--- a/accession_locations.json
+++ b/accession_locations.json
@@ -1 +1 @@
-{"type": "FeatureCollection", "features": [{"geometry": {"type": "Point", "coordinates": [68.79, 38.59]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [9.57, 50.92]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [-4.42, 48.62]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [-2.22, 57.15]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [9.59, 56.68]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [1.94, 45.1]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [-7.45, 31.48]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [7.63, 48.07]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [140.1, 39.77]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [9.01, 55.19]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [-3.36, 40.49]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [15.09, 37.52]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [15.09, 37.52]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [18.07, 59.35]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [1.39, 45.22]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [88.4, 47.76]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [88.4, 47.76]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [11.24, 46.37]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [5.32, 50.55]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [4.4, 51.23]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [4.28, 50.85]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [5.6, 50.61]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [5.6, 50.62]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [16.24, 38.76]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [49.37, 37.5]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": "Point", "coordinates": [49.37, 37.5]}, "type": "Feature", "id": null, "properties": {}}, {"geometry": {"type": 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geographic information": "Estimated location", "Genotyping remarks": "different from Ws-0 (419AV)", "Original stock center number": "N1602", "Versailles mapping population": "", "Accession name": "Ws-0"}}, {"geometry": {"type": "Point", "coordinates": [30.26, 59.94]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "85AV", "Country": "Belarus", "Quality of geographic information": "Estimated location", "Genotyping remarks": "identical to Ld-3, Ws-2 and Ws-4, two Ws-2 accessions (86AV and 455AV) identical", "Original stock center number": "N2223", "Versailles mapping population": "", "Accession name": "Ws-1"}}, {"geometry": {"type": "Point", "coordinates": [30.26, 59.94]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "86AV", "Country": "Belarus", "Quality of geographic information": "Estimated location", "Genotyping remarks": "identical to Ld-3, Ws-1 and Ws-4, two Ws-2 accessions (86AV and 455AV) identical", "Original stock 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{"Versailles accession number": "526AV", "Country": "Germany", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N1604", "Versailles mapping population": "", "Accession name": "Wt-1"}}, {"geometry": {"type": "Point", "coordinates": [9.84, 52.66]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "527AV", "Country": "Germany", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N1606", "Versailles mapping population": "", "Accession name": "Wt-2"}}, {"geometry": {"type": "Point", "coordinates": [9.84, 52.66]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "155AV", "Country": "Germany", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N1608", "Versailles mapping population": "", "Accession name": "Wt-3"}}, {"geometry": {"type": "Point", "coordinates": [9.84, 52.66]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "156AV", "Country": "Germany", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N1610", "Versailles mapping population": "", "Accession name": "Wt-4"}}, {"geometry": {"type": "Point", "coordinates": [9.84, 52.66]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "528AV", "Country": "Germany", "Quality of geographic information": "Estimated location", "Genotyping remarks": "two Wt-5 accessions (433AV and 528AV) nearly identical (3 differences)", "Original stock center number": "N1612", "Versailles mapping population": "", "Accession name": "Wt-5"}}, {"geometry": {"type": "Point", "coordinates": [9.93, 49.8]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "246AV", "Country": "Germany", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N1614", "Versailles mapping population": "", "Accession name": "Wu-0"}}, {"geometry": {"type": "Point", "coordinates": [0.0, 0.0]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "247AV", "Country": "nd", "Quality of geographic information": "nd", "Genotyping remarks": "identical to Xx-0", "Original stock center number": "N1616", "Versailles mapping population": "", "Accession name": "X-0"}}, {"geometry": {"type": "Point", "coordinates": [48.8, 38.65]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "582AV", "Country": "Azerbaijan", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N22703", "Versailles mapping population": "", "Accession name": "Xan-1"}}, {"geometry": {"type": "Point", "coordinates": [0.0, 0.0]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "248AV", "Country": "nd", "Quality of geographic information": "nd", "Genotyping remarks": "identical to X-0", "Original stock center number": "N1618", "Versailles mapping population": "", "Accession name": "Xx-0"}}, {"geometry": {"type": "Point", "coordinates": [0.0, 0.0]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "249AV", "Country": "nd", "Quality of geographic information": "nd", "Genotyping remarks": "identical to Col-0, Col-4, Col-5, Col-7, Berkeley, Bla-12, Limeport and Li-5", "Original stock center number": "N1620", "Versailles mapping population": "", "Accession name": "XXX-0"}}, {"geometry": {"type": "Point", "coordinates": [140.36, 38.48]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "259AV", "Country": "Japan", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "", "Versailles mapping population": "", "Accession name": "Yamagata"}}, {"geometry": {"type": "Point", "coordinates": [45.36, 39.87]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "590AV", "Country": "Armenia", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N22765", "Versailles mapping population": "", "Accession name": "Yeg-1"}}, {"geometry": {"type": "Point", "coordinates": [-119.58, 37.75]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "250AV", "Country": "USA", "Quality of geographic information": "Estimated location", "Genotyping remarks": "two Yo-0 accessions (250AV and 420AV) identical", "Original stock center number": "N1622", "Versailles mapping population": "parent of RIL set(s)", "Accession name": "Yo-0"}}, {"geometry": {"type": "Point", "coordinates": [16.61, 45.96]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "607AV", "Country": "Croatia", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N28909", "Versailles mapping population": "", "Accession name": "Zab-1"}}, {"geometry": {"type": "Point", "coordinates": [76.35, 42.8]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "536AV", "Country": "Kyrgyzstan", "Quality of geographic information": "Reliable location", "Genotyping remarks": "", "Original stock center number": "", "Versailles mapping population": "parent of F2(s)", "Accession name": "Zal-1"}}, {"geometry": {"type": "Point", "coordinates": [76.35, 42.8]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "537AV", "Country": "Kyrgyzstan", "Quality of geographic information": "Reliable location", "Genotyping remarks": "", "Original stock center number": "", "Versailles mapping population": "", "Accession name": "Zal-3"}}, {"geometry": {"type": "Point", "coordinates": [7.75, 46.03]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "529AV", "Country": "Switzerland", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N1624", "Versailles mapping population": "", "Accession name": "Ze-0"}}, {"geometry": {"type": "Point", "coordinates": [24.17, 42.22]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "602AV", "Country": "Bulgaria", "Quality of geographic information": "Estimated location", "Genotyping remarks": "", "Original stock center number": "N28873", "Versailles mapping population": "", "Accession name": "Zloc-1"}}, {"geometry": {"type": "Point", "coordinates": [8.54, 47.38]}, "type": "Feature", "id": null, "properties": {"Versailles accession number": "251AV", "Country": "Switzerland", "Quality of geographic information": "Estimated location", "Genotyping remarks": "identical to Et-0", "Original stock center number": "N1626", "Versailles mapping population": "", "Accession name": "Zu-0"}}]}
\ No newline at end of file
diff --git a/versailes2geojson.py b/versailes2geojson.py
index ec1c613..8470826 100644
--- a/versailes2geojson.py
+++ b/versailes2geojson.py
@@ -5,6 +5,9 @@
 # read in original data
 csv = pd.read_csv("versaille_stock.csv", sep="\t")
 
+# Pandas puts NaN in empty fields
+# swap NaN for empty strings
+csv = csv.fillna("")
 # fetch properties, remove Long and Lat
 props = list(csv.columns.values)
 props = [p for p in props if p not in ["Longitude",
@@ -19,7 +22,8 @@
     feature_props = {p: accession[p] for p in props}
 
     f = Feature(
-            geometry = Point((lon,lat))
+            geometry = Point((lon,lat)),
+            properties = feature_props
         )
 
     features.append(f)