From 180e52a2a40df83511f78c9a9eea66d192e242c8 Mon Sep 17 00:00:00 2001 From: mjohnson11 Date: Wed, 6 Jan 2021 18:42:31 -0500 Subject: [PATCH] Update README.md --- README.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 984c75f..647e759 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,11 @@ # VLTE_PIPELINES Pipelines for fitness assay, sequencing, etc. analysis of the VLTE ("very" long term evolution experiment (yeast)) -Basic analysis structure: Data is kept in a directory of the parent directory of this repo (see scripts for paths). +Basic analysis structure: +Scripts are run from the directories here. A "Data" directory is kept in the parent directory of this repo, and has these subdirectories: +Fitness, Imaging, KV, Other, Ploidy, TSA1_Fluctuation_Assay, WGS (see scripts for full paths to individual data files). + +### Other info WGS data is at https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP286889 and other data is available as supplementary files of https://www.biorxiv.org/content/10.1101/2020.10.09.330191v1 (you can also look up the title on eLife, where it will be published soon, to find the final version).