Embedded sub-repo

[nikihowe]

/Users/niki/Documents/constrained_vs_regularized/buddy-venv/bin/python /Users/niki/Documents/constrained_vs_regularized/mnist_classifier.py
INFO:root:Name your run in the pop-up window!
experiment_id: [CLUSTER] 667
INFO:paramiko.transport:Connected (version 2.0, client OpenSSH_8.2p1)
INFO:paramiko.transport:Authentication (publickey) successful!
/tmp/experiment_buddy-JIsNtnrCOu
INFO:paramiko.transport.sftp:[chan 2] Opened sftp connection (server version 3)
Slurmctld(primary) at slurm is UP
Slurmctld(backup) at slurmctl is DOWN
HEAD is now at 04e8c55 Initial commit
warning: adding embedded git repository: buddy-venv/src/experiment-buddy
hint: You've added another git repository inside your current repository.
hint: Clones of the outer repository will not contain the contents of
hint: the embedded repository and will not know how to obtain it.
hint: If you meant to add a submodule, use:
hint: 
hint: 	git submodule add <url> buddy-venv/src/experiment-buddy
hint: 
hint: If you added this path by mistake, you can remove it from the
hint: index with:
hint: 
hint: 	git rm --cached buddy-venv/src/experiment-buddy
hint: 
hint: See "git help submodule" for more information.
warning: adding embedded git repository: mnist_torchvision
Auto packing the repository in background for optimum performance.
See "git help gc" for manual housekeeping.
ERROR: The key you are authenticating with has been marked as read only.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
warning: unable to rmdir 'buddy-venv/src/experiment-buddy': Directory not empty
warning: unable to rmdir 'mnist_torchvision': Directory not empty
Previous HEAD position was 75e5d08 [CLUSTER] 667
Switched to branch 'master'
Traceback (most recent call last):
  File "/Users/niki/Documents/constrained_vs_regularized/mnist_classifier.py", line 115, in <module>
  File "/Users/niki/Documents/constrained_vs_regularized/mnist_classifier.py", line 76, in main
  File "/Users/niki/Documents/constrained_vs_regularized/config.py", line 23, in <module>
  File "/Users/niki/Documents/constrained_vs_regularized/buddy-venv/lib/python3.7/site-packages/funcy/debug.py", line 119, in inner
  File "/Users/niki/Documents/constrained_vs_regularized/buddy-venv/src/experiment-buddy/experiment_buddy/experiment_buddy.py", line 210, in deploy
    _commit_and_sendjob(host, experiment_id, sweep_yaml, git_repo, project_name, proc_num, extra_slurm_headers, wandb_kwargs)
  File "/Users/niki/Documents/constrained_vs_regularized/buddy-venv/src/experiment-buddy/experiment_buddy/experiment_buddy.py", line 309, in _commit_and_sendjob
    hash_commit = git_sync(experiment_id, git_repo)
  File "/Users/niki/Documents/constrained_vs_regularized/buddy-venv/src/experiment-buddy/experiment_buddy/experiment_buddy.py", line 371, in git_sync
    subprocess.check_output(f"git push {git_repo.remotes[0]} {tag_name}", shell=True)  # send to online repo
  File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/subprocess.py", line 411, in check_output
    **kwargs).stdout
  File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/subprocess.py", line 512, in run
    output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command 'git push origin snapshot/master/75e5d08ececaace30d56273cc920a230289cc2c3' returned non-zero exit status 128.

[DrTtnk]

Add "buddy-venv" to the .gitignore and delete and recreate the venv

If you don't have the .gitignore file, just create it in the root of your project, this should fix it

I'm currently working on a more elegant solution