diff --git a/docs/doctrees/environment.pickle b/docs/doctrees/environment.pickle index 4b4d7bb..284d151 100644 Binary files a/docs/doctrees/environment.pickle and b/docs/doctrees/environment.pickle differ diff --git a/docs/html/searchindex.js b/docs/html/searchindex.js index 690e493..b0aa916 100644 --- a/docs/html/searchindex.js +++ b/docs/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["README", "general/todos", "index", "tutorial/Eryn_tutorial", "tutorial/more_tutorials", "user/backend", "user/ensemble", "user/moves", "user/prior", "user/state", "user/temper", "user/utils"], "filenames": ["README.rst", "general/todos.rst", "index.rst", "tutorial/Eryn_tutorial.ipynb", "tutorial/more_tutorials.ipynb", "user/backend.rst", "user/ensemble.rst", "user/moves.rst", "user/prior.rst", "user/state.rst", "user/temper.rst", "user/utils.rst"], "titles": ["Eryn: a multi-purpose MCMC sampler", "Code Projects", "Welcome to Eryn\u2019s documentation!", "Eryn Basic Tutorial", "More Advanced Eryn Examples", "Backends", "Ensemble", "Moves", "Priors", "State", "Parallel Tempering", "Utilities"], "terms": {"i": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "an": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "advanc": [0, 2, 3, 6], "It": [0, 2, 3, 4, 5, 6, 7, 9, 10], "ha": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "capabl": [0, 2, 3], "parallel": [0, 2, 6, 7], "temper": [0, 1, 2, 5, 6, 7, 9], "multipl": [0, 2, 5, 6, 10, 11], "model": [0, 1, 2, 4, 5, 6, 7, 9, 10], "type": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "unknown": [0, 2, 3], "count": [0, 2, 5, 6, 7, 10], "within": [0, 1, 2, 3, 5, 6, 7, 9, 10, 11], "each": [0, 1, 2, 3, 4, 5, 6, 7, 9, 10, 11], "us": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "revers": [0, 2, 4, 5, 6, 11], "jump": [0, 2, 4, 5, 6], "techniqu": [0, 2, 3, 5, 11], "heavili": [0, 2, 3, 7], "base": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10], "emce": [0, 2, 3, 5, 6, 7, 11], "The": [0, 2, 4, 5, 6, 7, 8, 9, 10, 11], "structur": [0, 2, 3, 7], "ensembl": [0, 2, 4, 5, 7, 9, 11], "state": [0, 2, 4, 5, 6, 7, 10, 11], "object": [0, 1, 2, 5, 6, 7, 8, 9, 10, 11], "propos": [0, 1, 2, 3, 4, 5, 6, 7, 10, 11], "setup": [0, 2, 3, 7], "storag": [0, 2, 3, 5, 6, 9], "backend": [0, 2, 4, 6, 9, 10], "carri": [0, 1, 2, 3, 6, 9, 11], "over": [0, 2, 3, 4, 5, 6, 7, 10, 11], "small": [0, 2, 3, 5, 6], "chang": [0, 2, 3, 4, 6, 7, 11], "account": [0, 2, 3, 11], "increas": [0, 2, 3, 10], "complex": [0, 2, 3, 4], "In": [0, 2, 3, 4, 6, 7, 10, 11], "simpl": [0, 2, 3, 4, 5], "sens": [0, 2, 3], "slightli": [0, 2, 3], "more": [0, 2, 3, 5, 6, 7, 9, 10, 11], "complic": [0, 2, 3, 10], "If": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "you": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "your": [0, 2, 3, 4], "public": [0, 2, 3], "pleas": [0, 2, 3, 6, 9], "cite": [0, 2, 3], "paper": [0, 2, 3, 4, 10], "arxiv": [0, 2, 3, 10, 11], "2303": [0, 2, 3], "02164": [0, 2, 3], "its": [0, 2, 3, 6, 8], "zenodo": [0, 2, 3], "document": [0, 3, 5], "can": [0, 2, 3, 4, 6, 7, 9, 10, 11], "found": [0, 2, 3, 10, 11], "here": [0, 2, 3, 4, 6, 7, 9, 10], "mikekatz04": [0, 2, 3], "github": [0, 2, 3, 10, 11], "io": [0, 2, 3, 11], "find": [0, 2, 3, 7, 10], "code": [0, 2, 3, 10, 11], "com": [0, 2, 3, 10], "below": [0, 2, 3, 4, 6, 10], "quick": [0, 2, 3, 4], "set": [0, 2, 3, 4, 6, 7, 10, 11], "instruct": [0, 2], "pip": [0, 2], "To": [0, 2, 3, 4, 7], "import": [0, 2, 3, 4, 11], "from": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "ensemblesampl": [0, 2, 3, 4, 6, 7, 11], "see": [0, 2, 3, 5, 6, 7, 9, 10, 11], "exampl": [0, 2, 6, 7, 9, 10], "notebook": [0, 2, 6], "info": [0, 2, 5, 6, 7, 8], "also": [0, 2, 3, 4, 5, 7, 9, 10], "navig": [0, 2, 3], "page": [0, 2], "onli": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "few": [0, 2, 3], "python": [0, 2], "depend": [0, 2, 3, 4, 6], "tqdm": [0, 2, 6, 7], "corner": [0, 2, 3], "plot": [0, 1, 2, 3, 4, 5], "numpi": [0, 2, 3, 4, 6, 7, 8, 9, 11], "matplotlib": [0, 2, 3, 4], "ar": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "plan": [0, 2], "develop": [0, 2], "just": [0, 2, 3, 5, 6, 8, 9], "latest": [0, 2], "given": [0, 2, 3, 4, 5, 6, 7, 9, 10], "abov": [0, 2, 3, 4, 6, 7, 10, 11], "otherwis": [0, 2, 5], "clone": [0, 2], "repo": [0, 2], "insid": [0, 2, 8], "directori": [0, 2], "dure": [0, 2, 3, 9, 10, 11], "follow": [0, 2, 3, 6, 10], "main": [0, 2, 3, 6], "m": [0, 2, 3], "unittest": [0, 2], "discov": [0, 2], "packag": [0, 2, 4], "termin": [0, 2], "read": [0, 2, 3, 5, 7], "md": [0, 2], "detail": [0, 1, 2, 3, 5, 7], "our": [0, 2, 3, 4, 9], "conduct": [0, 2], "process": [0, 2, 3], "submit": [0, 2, 7], "pull": [0, 2], "request": [0, 2, 5, 7], "u": [0, 2, 3, 7], "we": [0, 2, 3, 4, 6, 10], "semver": [0, 2], "For": [0, 2, 3, 4, 6, 7, 9, 10], "avail": [0, 2, 3, 5, 6, 7], "tag": [0, 2], "thi": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "repositori": [0, 2], "current": [0, 2, 3, 4, 5, 7, 9], "1": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11], "6": [3, 4], "when": [0, 2, 3, 5, 6, 7, 8, 9, 10], "minimum": [0, 2, 5, 6, 7, 8, 9], "sourc": [0, 2, 3, 6, 7, 8], "articl": [0, 2], "karnesi": [0, 2], "2023ra": [0, 2], "nikolao": [0, 2], "katz": [0, 2], "michael": [0, 2], "l": [0, 2, 3, 4, 7, 11], "korsakova": [0, 2], "natalia": [0, 2], "gair": [0, 2], "jonathan": [0, 2], "r": [0, 2, 4, 5], "stergioula": [0, 2], "titl": [0, 2], "A": [0, 2, 3, 4, 5, 6, 7, 9, 11], "bayesian": [0, 2], "infer": [0, 2, 5, 11], "eprint": [0, 2], "archiveprefix": [0, 2], "primaryclass": [0, 2], "astro": [0, 2], "ph": [0, 2], "im": [0, 2], "month": [0, 2], "3": [0, 2, 3, 4, 6, 7, 11], "year": [0, 2], "2023": [0, 2], "softwar": [0, 2], "michael_katz_2023_7705496": [0, 2], "first": [0, 2, 3, 4, 5, 6, 7, 11], "full": [0, 2, 3, 7, 8, 11], "releas": [0, 2], "mar": [0, 2], "publish": [0, 2], "v1": [0, 2], "0": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "doi": [0, 2], "10": [0, 2, 3, 4], "5281": [0, 2], "7705496": [0, 2], "url": [0, 2], "http": [0, 2, 3, 8, 9, 11], "org": [0, 2, 8, 9, 11], "2013pasp": [0, 2], "125": [0, 2], "306f": [0, 2], "foreman": [0, 2, 7], "mackei": [0, 2, 7], "daniel": [0, 2], "hogg": [0, 2], "david": [0, 2], "w": [0, 2], "lang": [0, 2], "dustin": [0, 2], "goodman": [0, 2, 7], "hammer": [0, 2], "journal": [0, 2, 5, 11], "pasp": [0, 2], "keyword": [0, 2, 3, 5, 6, 7, 11], "astrophys": [0, 2], "instrument": [0, 2], "method": [0, 2, 3, 4, 5, 6, 7, 8, 11], "physic": [0, 2], "comput": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "statist": [0, 2, 5, 11], "2013": [0, 2, 7], "volum": [0, 2], "number": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "925": [0, 2], "306": [0, 2], "1086": [0, 2], "670067": [0, 2], "1202": [0, 2], "3665": [0, 2], "adsurl": [0, 2], "ui": [0, 2], "adsab": [0, 2], "harvard": [0, 2], "edu": [0, 2], "ab": [0, 2, 11], "adsnot": [0, 2], "provid": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10], "sao": [0, 2], "nasa": [0, 2], "data": [0, 2, 3, 4, 5, 6], "system": [0, 2], "which": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "mai": [0, 2, 3, 6, 7, 8, 11], "requir": [0, 2, 3, 6, 7], "make": [0, 2, 3, 4, 5, 7, 10, 11], "sure": [0, 2, 3, 7, 11], "do": [0, 2, 3, 4, 6, 7, 8, 11], "properli": [0, 2, 3, 5, 11], "niko": [0, 2, 4], "mayb": [0, 2], "project": [0, 2, 3], "under": [0, 2, 3, 9, 10], "gnu": [0, 2], "file": [0, 2, 5, 6], "wish": [0, 2], "thank": [0, 2, 7], "": [0, 3, 4, 6, 7, 11], "babak": [0, 2], "le": [0, 2], "jeun": [0, 2], "marsat": [0, 2], "t": [0, 2, 3, 4, 5, 6, 7, 10], "littenberg": [0, 2], "n": [0, 2, 4, 5, 6, 7, 11], "cornish": [0, 2], "comment": [0, 2], "veri": [0, 2, 3, 4, 5, 6, 7], "fruit": [0, 2], "discuss": [0, 2, 3], "support": [0, 2, 6, 10], "gr": [0, 2], "prodex": [0, 2], "2019": [0, 2], "fund": [0, 2], "program": [0, 2, 4, 5], "pea": [0, 2], "4000132310": [0, 2], "implement": [1, 2, 3, 6, 9], "product": 1, "space": [1, 3, 4, 5, 6, 9, 10, 11], "mcmc": [1, 4, 5, 6, 7, 9, 11], "direct": [1, 3, 11], "comparison": [1, 5, 11], "suppliment": [1, 3, 7, 9, 10], "log": [1, 3, 4, 5, 6, 7, 8, 9, 10, 11], "likelihood": [1, 3, 4, 5, 6, 7, 9, 10, 11], "perform": [1, 3, 4, 6, 7, 10, 11], "modul": [1, 4], "automat": [1, 6], "produc": [1, 3, 6, 8], "varieti": 1, "imag": 1, "tree": [1, 2], "metaphor": [1, 2], "eryn": [1, 5, 6, 7, 8, 9, 10, 11], "move": [1, 2, 4, 5, 6, 9, 10, 11], "stretchmov": [1, 2, 3, 6, 7], "add": [1, 2, 4, 6, 7, 9], "option": [1, 3, 5, 6, 7, 8, 9, 10, 11], "ptemce": [1, 10, 11], "step": [1, 3, 4, 5, 6, 7, 9, 10, 11], "stone": [1, 5, 11], "integr": [1, 3, 11], "group": [1, 2, 4, 5, 6, 8, 11], "combin": [1, 3, 7, 11], "red": [1, 2], "blue": [1, 2], "where": [1, 3, 4, 5, 6, 7, 10, 11], "stationari": [1, 3, 7], "distribut": [1, 2, 6, 7], "split": [1, 3, 7], "two": [1, 3, 4, 5, 6, 11], "accord": [1, 8, 10, 11], "walker": [1, 3, 4, 5, 6, 7, 9, 10, 11], "Will": 1, "guarante": 1, "balanc": [1, 3, 7], "alwai": [1, 3], "random_st": [2, 5, 6, 9], "prior": [2, 4, 5, 6, 7, 9, 10, 11], "reset": [2, 4, 5, 6, 11], "get_model": [2, 6, 11], "sampl": [2, 4, 5, 6, 7, 8, 10, 11], "run_mcmc": [2, 3, 4, 6], "compute_log_prior": [2, 3, 6], "compute_log_lik": [2, 3, 6], "acceptance_fract": [2, 6, 7], "rj_acceptance_fract": [2, 6], "swap_acceptance_fract": [2, 6], "rj_swap_acceptance_fract": [], "get_chain": [2, 3, 4, 5, 6], "get_blob": [2, 5, 6], "get_log_lik": [2, 3, 5, 6], "get_log_prior": [2, 3, 5, 6], "get_log_posterior": [2, 3, 5, 6, 9], "get_ind": [2, 3, 5, 6], "get_nleav": [2, 3, 5, 6], "get_last_sampl": [2, 3, 5, 6], "get_beta": [2, 5, 6], "get_valu": [2, 4, 5, 6], "get_autocorr_tim": [2, 5, 6], "branches_ind": [2, 3, 6, 7, 9], "branches_coord": [2, 3, 6, 7, 9], "branches_suppliment": [2, 7, 9], "branch_nam": [2, 3, 4, 5, 6, 7, 9, 11], "branch": [2, 4, 5, 6, 7, 9, 10, 11], "nleav": [2, 3, 5, 6, 9], "branchsuppliment": [2, 3, 6, 7, 9, 10], "holder": [2, 7, 9], "add_object": [2, 9], "remove_object": [2, 9], "contained_object": [2, 9], "take_along_axi": [2, 9], "put_along_axi": [2, 9], "flat": [2, 3, 9, 11], "regular": [2, 3], "accept": [2, 3, 5, 6, 7, 10], "beta": [2, 3, 4, 5, 6, 7, 9, 10, 11], "blob": [2, 3, 4, 5, 6, 9, 10], "chain": [2, 3, 4, 5, 6, 10, 11], "dtype": [2, 3, 4, 5], "ind": [2, 3, 4, 5, 6, 7, 9, 10, 11], "initiail": [2, 5], "iter": [2, 3, 5, 6, 7, 10, 11], "log_prior": [2, 3, 5, 9], "log_lik": [2, 3, 4, 5, 9], "move_info": [2, 5], "move_kei": [2, 5], "nbranch": [2, 3, 4, 5, 6], "ndim": [2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "nleaves_max": [2, 3, 4, 5, 6, 7, 9, 11], "nwalker": [2, 3, 4, 5, 6, 7, 9, 10, 11], "ntemp": [2, 3, 4, 5, 6, 7, 9, 10, 11], "reset_arg": [2, 5], "reset_kwarg": [2, 5], "rj": [2, 3, 4, 5], "rj_accept": [2, 5], "store_missing_leav": [2, 5], "reset_bas": [2, 5], "has_blob": [2, 5], "get_autocorr_thin_burn": [2, 5], "get_a_sampl": [2, 3, 5], "get_evidence_estim": [2, 5], "get_gelman_rubin_convergence_diagnost": [2, 5], "shape": [2, 3, 4, 5, 6, 7, 9, 10], "grow": [2, 5], "get_move_info": [2, 5], "save_step": [2, 5], "get_info": [2, 5], "hdf": 2, "hdfbackend": [2, 4, 5, 6], "initi": [2, 3, 4, 5, 6, 9, 10, 11], "open": [2, 5], "swaps_accept": [2, 5], "parent": [2, 3], "class": [2, 3, 4, 5, 6, 8, 9, 10], "note": [2, 3, 6, 7, 9, 11], "num_propos": [2, 7], "gibbs_sampling_setup": [2, 3, 7], "xp": [2, 7, 9, 11], "use_gpu": [2, 7], "gibbs_sampling_setup_iter": [2, 7], "setup_propos": [2, 7], "cleanup_proposals_gibb": [2, 7], "ensure_ord": [2, 7], "fix_logp_gibb": [2, 7], "temperature_control": [2, 6, 7, 11], "compute_log_posterior_bas": [2, 7], "tune": [2, 6, 7, 11], "updat": [2, 4, 6, 7, 9], "metropoli": [2, 3], "hast": [2, 3], "mh": 2, "mhmove": [2, 3, 7], "gaussianmov": [2, 3, 4, 7], "distributiongener": [2, 7], "redbluemov": [2, 3, 7], "groupmov": [2, 3, 7], "groupstretchmov": [2, 3, 7], "reversiblejumpmov": [2, 3, 7], "distributiongeneraterj": [2, 3, 6, 7], "mutlipl": [2, 3], "try": [2, 4, 6], "multipletrymov": [2, 7], "mtdistgenmov": [2, 7], "mtdistgenmoverj": [2, 7], "util": [2, 4, 6, 9], "combinemov": [2, 3, 7], "acceptance_fraction_separ": [2, 7], "period": [2, 6, 7], "probabl": [2, 3, 6, 7, 9, 10], "contain": [2, 4, 5, 6, 7, 9], "probdistcontain": [2, 3, 4, 6, 7, 8], "priors_in": [2, 3, 8], "use_cupi": [2, 8], "logpdf": [2, 3, 6, 7, 8], "ppf": [2, 8], "rv": [2, 3, 4, 7, 8], "uniform_dist": [2, 3, 4, 8], "log_uniform": [2, 8], "mappeduniformdistribut": [2, 8], "temperaturecontrol": [2, 3, 6, 7, 10], "compute_log_posterior_temp": [2, 10], "tempered_likelihood": [2, 10], "temperature_swap": [2, 10], "temper_comp": [2, 10], "make_ladd": [2, 3, 10], "periodiccontain": [2, 3, 7, 11], "distanc": [2, 3, 11], "wrap": [2, 3, 11], "transformcontain": [2, 3], "transform_base_paramet": [2, 3, 11], "fill_valu": [2, 3, 4, 7, 11], "both_transform": [2, 11], "function": [2, 4, 5, 6, 7, 8, 9, 10], "adjuststretchproposalscal": [2, 6, 11], "stop": [2, 6, 10], "searchconvergestop": [2, 3, 11], "other": [2, 3, 4, 5, 6, 7, 9], "groups_from_ind": [2, 3, 11], "get_acf": [2, 11], "get_integrated_act": [2, 11], "thermodynamic_integration_log_evid": [2, 5, 11], "stepping_stone_log_evid": [2, 5, 11], "psrf": [2, 11], "basic": [2, 4, 5, 6], "5": [2, 4, 6, 7, 11], "dimension": [2, 4, 5, 6, 7, 8], "arrai": [2, 4, 5, 6, 7, 8, 9, 10, 11], "uncertainti": 2, "gibb": [2, 7], "transform": [2, 4, 11], "multivari": 2, "search": [2, 3, 7], "gaussian": [2, 3, 7, 10], "puls": [2, 3], "2d": [2, 3, 5, 6, 7, 9, 10], "choos": [2, 3, 10], "optim": 2, "b": [2, 3, 5, 11], "spline": 2, "order": [2, 3, 6, 7, 10, 11], "todo": 2, "pyplot": [3, 4], "plt": [3, 4], "np": [3, 4, 5, 6, 7, 8, 9, 10, 11], "random": [3, 4, 5, 6, 7, 8, 9, 11], "seed": [3, 4, 7], "42": [3, 4], "run": [3, 4, 5, 6, 7, 9], "version": 3, "go": [3, 6, 7], "through": [3, 7, 9], "much": [3, 5, 10], "what": [3, 4], "oper": [3, 10, 11], "illustr": 3, "how": [3, 6, 7], "build": 3, "common": 3, "scale": [3, 7], "up": [3, 4], "understand": [3, 6], "differ": [3, 4, 6, 9, 11], "circumst": 3, "better": 3, "overal": [3, 5, 6, 9], "goal": 3, "assess": [3, 6], "posterior": [3, 4, 5, 6, 7, 9, 10, 11], "paramet": [3, 4, 5, 6, 7, 8, 9, 10, 11], "vec": 3, "theta": [3, 11], "mathcal": 3, "some": [3, 4, 5, 6, 7, 10, 11], "y": [3, 4], "p": [3, 7, 11], "rewrit": 3, "bay": 3, "rule": 3, "frac": [3, 11], "piec": 3, "righthand": 3, "side": [3, 4], "refer": [3, 4, 7, 8, 9], "now": [3, 4, 7, 10], "pi": [3, 4], "surfac": [3, 4], "weight": [3, 6, 7], "write": [3, 5], "chosen": [3, 7, 10], "evid": [3, 5, 11], "numer": [3, 4, 7], "equat": 3, "all": [3, 4, 5, 6, 7, 8, 9, 10, 11], "int_": 3, "_": [3, 4, 7, 8, 9], "d": [3, 4, 11], "z": [3, 11], "draw": [3, 4, 7], "densiti": [3, 4], "explor": [3, 6], "most": [3, 5, 6, 11], "applic": 3, "intract": 3, "ignor": [3, 5, 6, 7], "constant": [3, 4, 10], "factor": [3, 4, 7], "There": 3, "estim": [3, 4, 5, 6, 11], "special": [3, 6, 9, 10], "becaus": [3, 4, 6, 7, 11], "concept": 3, "call": [3, 4, 6, 7, 11], "preferenti": 3, "upward": 3, "probabilist": 3, "downward": 3, "allow": [3, 4, 5, 6, 7, 9, 10], "peak": [3, 4], "rather": [3, 6, 7, 10], "than": [3, 6, 7, 8, 9, 10, 11], "directli": [3, 4, 5, 6, 7, 9], "toward": 3, "highest": 3, "point": [3, 4, 7, 8], "work": [3, 4, 6, 7, 10], "discsuss": 3, "At": 3, "level": [3, 4, 5], "know": 3, "algorithm": [3, 10], "like": [3, 4, 6, 7, 9, 10], "_t": 3, "2": [3, 4, 5, 6, 7, 11], "new": [3, 6, 7, 11], "posit": [3, 4, 6, 7, 9, 11], "probabilti": 3, "alpha": [3, 4], "min": [3, 4, 8], "left": [3, 4, 11], "q": [3, 7], "right": [3, 11], "4": [3, 4, 6], "repeat": [3, 4, 6, 10, 11], "mani": [3, 6, 9], "time": [3, 4, 5, 6, 7, 10, 11], "vice": 3, "versa": 3, "symmetr": [3, 7], "drop": 3, "out": [3, 4, 7], "fraction": [3, 5, 6, 7], "case": [3, 4, 6, 10], "larger": 3, "previou": [3, 4, 5, 6, 11], "wors": 3, "old": [3, 7, 11], "equal": [3, 4], "therefor": [3, 11], "valu": [3, 4, 5, 6, 7, 8, 9, 10, 11], "becom": [3, 6, 10], "compar": 3, "decreas": 3, "befor": [3, 4, 6, 7, 9, 11], "infam": 3, "help": [3, 5, 7, 11], "think": 3, "about": [3, 4], "earli": 3, "creation": 3, "end": [3, 6], "sindarin": 3, "word": [3, 11], "forest": 3, "wood": 3, "purpos": 3, "simplifi": 3, "associ": [3, 5, 6, 7, 8, 9, 10, 11], "everywher": 3, "those": [3, 4, 7], "descript": 3, "quickli": 3, "confus": 3, "bunch": 3, "These": [3, 5, 7, 9, 11], "have": [3, 4, 5, 6, 7, 8, 9, 10, 11], "same": [3, 5, 6, 7, 9, 10], "fix": [3, 4, 7, 11], "throughout": [3, 9], "e": [3, 11], "signal": [3, 4], "sine": 3, "wave": 3, "one": [3, 4, 6, 7, 9, 10], "leaf": [3, 5, 6, 7, 9], "so": [3, 4, 5, 6, 7, 9, 10, 11], "imagin": 3, "leav": [3, 4, 5, 6, 7, 9, 10, 11], "second": [3, 4, 6, 7], "temperatur": [3, 4, 5, 6, 7, 9, 10, 11], "let": [3, 11], "ln": 3, "propto": 3, "x": [3, 4, 8, 10, 11], "mu": [3, 4], "tild": 3, "c": [3, 4, 5, 7, 11], "def": [3, 4], "log_like_fn": [3, 6, 11], "invcov": 3, "diff": [3, 4, 11], "return": [3, 4, 5, 6, 7, 8, 9, 10, 11], "dot": 3, "sum": [3, 4, 8], "dimens": [3, 4, 5, 6, 7, 9, 10, 11], "Then": [3, 9, 11], "gener": [3, 4, 5, 6, 7, 8, 9, 10, 11], "covari": [2, 7], "matrix": [3, 4, 7], "mean": [3, 4, 7, 8, 9, 11], "compon": [3, 4, 6, 9], "100": [3, 4, 7, 10, 11], "zero": [3, 4, 6, 8, 9], "rand": 3, "defin": [3, 4, 10], "cov": [3, 4, 7], "diag": [3, 4], "ones": [3, 4], "linalg": [3, 4], "inv": [3, 4], "next": [3, 10], "simplic": [3, 4], "problem": [3, 4, 7], "hyper": 3, "cube": 3, "center": 3, "length": [3, 5, 6, 7, 11], "lim": 3, "similar": [3, 4, 7, 9], "scipi": [3, 4, 8], "stat": [3, 8], "helper": [3, 7], "aid": 3, "html": [3, 8, 9, 11], "user": [3, 4, 5, 6, 7, 8, 10, 11], "__": 3, "take": [3, 4, 5, 6, 7, 8, 9], "dictionari": [3, 5, 6, 7, 8, 9, 10, 11], "input": [3, 4, 5, 6, 7, 8, 9, 10, 11], "simplest": [3, 6], "form": [3, 6, 7, 11], "kei": [3, 4, 5, 6, 7, 8, 9, 10, 11], "integ": [3, 6], "repres": [3, 7], "index": [3, 5, 6, 7, 8, 9, 10, 11], "wrapper": [3, 11], "uniform": [3, 4, 8], "enter": [3, 7], "3d": [3, 5, 9], "would": [3, 6, 7, 10], "look": [3, 4, 10], "limit": [3, 4], "rang": [3, 4, 7, 8], "realli": [3, 5, 11], "ani": [3, 4, 5, 6, 7], "focu": 3, "deal": 3, "output": [3, 5, 6, 8, 9, 10, 11], "fun": 3, "stuff": 3, "everyth": [3, 4, 6], "argument": [3, 5, 6, 7, 10, 11], "arg": [3, 4, 6, 7], "kwarg": [3, 5, 6, 7, 8, 11], "invers": [3, 5, 6, 7, 10, 11], "extra": [3, 5, 6], "evalu": [3, 4, 5, 6, 10], "coord": [3, 4, 6, 7, 9], "size": [3, 4, 5, 7, 8, 11], "check": [3, 4, 5, 6, 11], "asarrai": 3, "print": [3, 4, 5, 11], "30": [3, 4, 11], "69858605": 3, "27": [3, 4], "88613553": 3, "22294092": 3, "14": [3, 4], "70569247": 3, "18": [3, 4], "96300942": 3, "40": 3, "24777582": 3, "73441074": 3, "24": 3, "83741982": 3, "29": [3, 4], "01040764": 3, "8427905": 3, "15": [3, 4], "6395355": 3, "37": 3, "63324244": 3, "32945619": 3, "23": [3, 4], "65755241": 3, "71578138": 3, "17": [3, 4], "41587351": 3, "60372232": 3, "78508305": 3, "16": [3, 4], "44610878": 3, "65807937": 3, "96569731": 3, "21": [3, 4], "07245692": 3, "71012131": 3, "11": [3, 4], "7938995": 3, "26": [3, 4], "68678623": 3, "56139796": 3, "07206293": 3, "22766639": 3, "70138195": 3, "66486977": 3, "12": [3, 4], "67496753": 3, "03289018": 3, "46929288": 3, "72131899": 3, "44": 3, "24698912": 3, "3584848": 3, "19": [3, 4], "77366496": 3, "28": [3, 4], "72150734": 3, "84518648": 3, "33": [3, 4], "37118884": 3, "36": 3, "15731891": 3, "25": [3, 4, 10], "26041351": 3, "57594664": 3, "25802303": 3, "22": [3, 4, 11], "37039294": 3, "31": [3, 4], "88982593": 3, "35309536": 3, "45627855": 3, "46651653": 3, "11210745": 3, "31311317": 3, "36123373": 3, "67409531": 3, "41272599": 3, "34": [3, 4], "51272062": 3, "13": [3, 4], "40386882": 3, "6083427": 3, "3819265": 3, "56151466": 3, "79275524": 3, "09464227": 3, "63670509": 3, "88594767": 3, "5583328": 3, "38": 3, "33786195": 3, "04251137": 3, "92432228": 3, "5383962": 3, "02898281": 3, "39747766": 3, "93610511": 3, "43": 3, "67631032": 3, "6288042": 3, "57863213": 3, "43201382": 3, "71339587": 3, "98065915": 3, "34629761": 3, "53454745": 3, "20": [3, 4], "72808992": 3, "58751379": 3, "39368888": 3, "15662608": 3, "32": [3, 4], "82365756": 3, "8": [3, 4], "14075088": 3, "22668818": 3, "43301692": 3, "79050623": 3, "10278803": 3, "10581548": 3, "66327643": 3, "96839538": 3, "91765459": 3, "73450427": 3, "25399003": 3, "51642261": 3, "99636574": 3, "3527218": 3, "90758502": 3, "35": [3, 4], "26045709": 3, "51292546": 3, "unit": [3, 5, 6], "cover": 3, "must": [3, 5, 6, 7, 8, 9, 10, 11], "inclus": 3, "burn": [3, 4, 5, 6, 10], "certain": 3, "progress": [3, 4, 6, 7], "true": [3, 4, 5, 6, 7, 8, 9, 10, 11], "show": [3, 4, 6, 7], "thin_bi": [3, 4, 6, 11], "thin": [3, 4, 5, 6], "total": [3, 4, 6, 11], "nstep": [3, 4, 5, 6], "store": [3, 5, 6, 7, 9, 11], "7": [0, 2, 3, 4, 5, 11], "500": [3, 4], "1000": [3, 4], "00": [3, 4], "lt": [3, 4], "280": [], "45it": [], "2500": 3, "08": 3, "305": [], "75it": [], "inform": [3, 4, 5, 6, 7, 9, 10, 11], "default": [3, 4, 5, 6, 7, 8, 9, 10, 11], "retriev": [3, 6], "omdel": 3, "name": [3, 4, 5, 6, 7, 9, 10, 11], "per": [3, 4, 5, 6, 7, 9, 10], "intimid": 3, "assign": [3, 6, 7], "model_0": [3, 5], "model_n": [3, 5], "reshap": [3, 4], "truth": [3, 4], "9": [3, 4], "fig": [3, 4], "ax": [3, 4], "subplot": [3, 4], "set_size_inch": 3, "walk": 3, "commonli": 3, "cours": 3, "specif": [3, 5, 6, 7, 9], "last": [3, 4, 5, 6, 7, 11], "rais": [3, 5, 6, 7, 8, 9, 10, 11], "either": [3, 6], "equival": [3, 6, 9], "properti": [3, 5, 6, 7, 9], "tupl": [3, 5, 6, 7, 8, 9, 10, 11], "includ": [3, 5, 6, 7, 8, 10], "outer": 3, "notic": 3, "quantiti": [3, 4, 7, 9], "singl": [3, 6, 11], "g": [3, 11], "ll": [3, 7], "lp": [3, 7], "f": [3, 4, 6], "05297225": 3, "81695595": 3, "80839791": 3, "30449907": 3, "65001331": 3, "72492908": 3, "51878996": 3, "89787788": 3, "49356178": 3, "65518146": 3, "7436319": 3, "66068016": 3, "03059694": 3, "49585829": 3, "90577462": 3, "04656098": 3, "0396035": 3, "80658449": 3, "73887276": 3, "27535667": 3, "36789573": 3, "19099689": 3, "72232295": 3, "43958501": 3, "44427868": 3, "05581352": 3, "30749439": 3, "85688564": 3, "11343788": 3, "24766066": 3, "6654815": 3, "28154314": 3, "00102494": 3, "6139005": 3, "08899932": 3, "1398411": 3, "clariti": 3, "evolut": 3, "maximum": [3, 4, 5, 6, 7, 8, 10, 11], "describ": [3, 4, 6, 7, 8], "ensebl": 3, "39": [3, 4], "dict": [3, 4, 5, 6, 7, 8, 9, 10, 11], "gt": [3, 4], "dict_kei": 3, "thei": [3, 4, 6, 7, 8, 9], "examin": 3, "coordin": [3, 4, 6, 7, 9, 10, 11], "addit": [3, 7], "pass": [3, 5, 6, 7, 9, 11], "explain": [3, 6], "anoth": [3, 6, 7, 9], "wai": [3, 4, 6], "That": 3, "howev": 3, "wa": [3, 5, 7, 9, 10], "runtim": 3, "last_stat": 3, "access": [3, 5, 6, 9, 11], "ask": 3, "give": [3, 7, 9], "moment": 3, "41852808": 3, "87391204": 3, "05035603": 3, "47197889": 3, "04722716": 3, "8519063": 3, "53028792": 3, "47895075": 3, "91435392": 3, "67615627": 3, "59494035": 3, "09579563": 3, "31956089": 3, "61486196": 3, "12447462": 3, "1692713": 3, "54813706": 3, "47761491": 3, "81600973": 3, "57141612": 3, "18369399": 3, "03114163": 3, "03929851": 3, "37835437": 3, "41370852": 3, "04192051": 3, "24060107": 3, "81791365": 3, "43145056": 3, "01976309": 3, "08419629": 3, "29498179": 3, "08090042": 3, "03457142": 3, "97839311": 3, "45783438": 3, "54860516": 3, "39096809": 3, "63453914": 3, "05034555": 3, "13275529": 3, "13057916": 3, "21847262": 3, "14804885": 3, "15556008": 3, "92686111": 3, "99795709": 3, "35164059": 3, "21098077": 3, "21647944": 3, "15304968": 3, "4313149": 3, "70693915": 3, "4318716": 3, "84488379": 3, "02338003": 3, "07328961": 3, "98861309": 3, "0448529": 3, "76536477": 3, "86707428": 3, "24040534": 3, "52161672": 3, "93361207": 3, "10290796": 3, "69669336": 3, "98189704": 3, "90223547": 3, "3408396": 3, "12094704": 3, "14709346": 3, "37990706": 3, "48720061": 3, "15361028": 3, "1595534": 3, "80055637": 3, "59197714": 3, "34129599": 3, "36805722": 3, "01708067": 3, "58699943": 3, "32689704": 3, "58811303": 3, "7197202": 3, "05348442": 3, "2112424": 3, "3357544": 3, "65449106": 3, "68322549": 3, "04792421": 3, "13391508": 3, "31811812": 3, "46163754": 3, "10129065": 3, "178406967597018": 3, "794468601537229": 3, "51395040804473": 3, "931453545910662": 3, "386837504796224": 3, "563281497846829": 3, "984904356428126": 3, "560152628566094": 3, "364831763416989": 3, "043213387296886": 3, "991876210506318": 3, "427279383435607": 3, "18908173602542": 3, "107865819910735": 3, "608721090901623": 3, "832486351401688": 3, "12778742254714": 3, "637400087040206": 3, "682196761468905": 3, "061062522948745": 3, "99054037739138": 3, "328935193719195": 3, "084341581952058": 3, "696619458753926": 3, "544067098137223": 3, "552223973129747": 3, "89127983919111": 3, "926633980338917": 3, "55484597643607": 3, "753526531972273": 3, "330839113958634": 3, "944376020031633": 3, "532688554298963": 3, "597121756200298": 3, "807907257937872": 3, "593825884034455": 3, "547496880273862": 3, "491318574369066": 3, "970759842526956": 3, "061530625801362": 3, "903893550359193": 3, "147464607768942": 3, "563271019780707": 3, "64568075132453": 3, "643504626290895": 3, "731398085093454": 3, "660974318785833": 3, "668485545961143": 3, "439786571171963": 3, "510882553516781": 3, "864566059032157": 3, "72390623089636": 3, "729404901485783": 3, "665975147003136": 3, "94424036264724": 3, "219864618156716": 3, "944797066539389": 3, "357809250310932": 3, "536305491515654": 3, "586215078293383": 3, "501538559296131": 3, "557778368205309": 3, "278290231060463": 3, "37999974857351": 3, "753330808148338": 3, "034542185913606": 3, "44653753837222": 3, "61583342786152": 3, "209618824491073": 3, "494822509135583": 3, "415160934688622": 3, "8537650614948": 3, "633872503903893": 3, "66001892478048": 3, "892832526613594": 3, "000126072062562": 3, "666535740104562": 3, "672478860022272": 3, "313481837705911": 3, "104902607647315": 3, "854221450723335": 3, "880982689335216": 3, "530006134397748": 3, "099924895847023": 3, "839822509144446": 3, "101038497292365": 3, "232645664310798": 3, "566409885481924": 3, "724167865929159": 3, "848679866185286": 3, "167416523641707": 3, "196150950789018": 3, "560849676395932": 3, "646840543492647": 3, "831043581839076": 3, "974563002223718": 3, "614216117226597": 3, "126825968142406": 3, "601924782141412": 3, "65276656606936": 3, "shown": [3, 6], "down": [3, 7, 10], "individu": [3, 5, 6, 7, 8, 9], "model_nam": 3, "With": [3, 4, 6], "thing": [3, 4], "later": 3, "want": [3, 4, 5, 6, 7, 9, 10], "0x7fe51cbb3940": [], "78336101": 3, "50304083": 3, "16554043": 3, "38717246": 3, "53567929": 3, "67992539": 3, "45789611": 3, "71044046": 3, "99561671": 3, "18785587": 3, "58942687": 3, "98468048": 3, "23409897": 3, "34754982": 3, "5749637": 3, "51043746": 3, "46761376": 3, "36652826": 3, "13575554": 3, "58616381": 3, "56687718": 3, "71412812": 3, "07272873": 3, "90290266": 3, "9749437": 3, "26148892": 3, "32754323": 3, "05336273": 3, "43505825": 3, "23267062": 3, "11388586": 3, "97965383": 3, "18803374": 3, "55536628": 3, "50140833": 3, "97231495": 3, "80168105": 3, "87750463": 3, "55941876": 3, "9055604": 3, "93206222": 3, "61099548": 3, "22893838": 3, "06397951": 3, "53085973": 3, "78123828": 3, "29397075": 3, "87720694": 3, "51235873": 3, "87712242": 3, "0915609": 3, "06094217": 3, "39300579": 3, "27838045": 3, "6473782": 3, "6848448": 3, "37394608": 3, "43214013": 3, "80375073": 3, "62217316": 3, "78087387": 3, "37379556": 3, "70695828": 3, "98429392": 3, "46919589": 3, "87912662": 3, "80736483": 3, "84535279": 3, "02691072": 3, "61697279": 3, "59413254": 3, "14139239": 3, "70216385": 3, "56814835": 3, "23763059": 3, "8783785": 3, "93419666": 3, "25561706": 3, "41370698": 3, "03998814": 3, "43668379": 3, "39311608": 3, "07642243": 3, "43586086": 3, "97223065": 3, "00745957": 3, "21236731": 3, "23184676": 3, "8907263": 3, "16475211": 3, "7308126": 3, "62439654": 3, "69996634": 3, "52028448": 3, "43853217": 3, "30865891": 3, "92696939": 3, "98209765": 3, "4834703": 3, "30722477": 3, "07144626": 3, "56432505": 3, "29089771": 3, "32751881": 3, "1210728": 3, "25274812": 3, "9270326": 3, "58971747": 3, "75561133": 3, "33792123": 3, "05336995": 3, "51405245": 3, "06533858": 3, "93630816": 3, "40238616": 3, "10136621": 3, "01709496": 3, "08910818": 3, "52223649": 3, "2454308": 3, "86197169": 3, "73127788": 3, "07000261": 3, "29443113": 3, "40651963": 3, "81087754": 3, "31763714": 3, "12761906": 3, "55144102": 3, "21964748": 3, "72082232": 3, "66783269": 3, "61110439": 3, "05759876": 3, "18926752": 3, "31039828": 3, "84006455": 3, "7555078": 3, "88418758": 3, "82023276": 3, "15032279": 3, "28216431": 3, "19945317": 3, "9670416": 3, "37643346": 3, "20656978": 3, "09247869": 3, "83026592": 3, "29333812": 3, "54354725": 3, "0506733": 3, "58235446": 3, "0591977": 3, "01318246": 3, "08567564": 3, "00402466": 3, "09280401": 3, "57272931": 3, "10612996": 3, "56686201": 3, "63470563": 3, "29598879": 3, "03616789": 3, "20713821": 3, "3009565": 3, "69564655": 3, "26928194": 3, "15389273": 3, "12383051": 3, "51493035": 3, "79119556": 3, "69120098": 3, "01019032": 3, "21449347": 3, "19529285": 3, "39078543": 3, "32386668": 3, "4771604": 3, "02665296": 3, "27157202": 3, "66344411": 3, "40855699": 3, "2227286": 3, "03021349": 3, "12585205": 3, "0358304": 3, "67413575": 3, "6791267": 3, "17160254": 3, "00517803": 3, "66454531": 3, "44931894": 3, "2731242": 3, "80140622": 3, "09520302": 3, "08417592": 3, "2045363": 3, "81677496": 3, "60685038": 3, "11358217": 3, "41939285": 3, "56655054": 3, "45246425": 3, "12320174": 3, "25527187": 3, "02585738": 3, "4670955": 3, "71912218": 3, "7720434": 3, "05341122": 3, "29611737": 3, "1748023": 3, "4372776": 3, "68897449": 3, "3131327": 3, "24317085": 3, "05633037": 3, "50847769": 3, "16816417": 3, "76160903": 3, "43456796": 3, "81744538": 3, "64783055": 3, "33848598": 3, "09218265": 3, "19003503": 3, "0901105": 3, "68079509": 3, "42874181": 3, "48445254": 3, "09533596": 3, "1585624": 3, "28324105": 3, "41256148": 3, "93230171": 3, "30259333": 3, "2291636": 3, "14969874": 3, "02255485": 3, "58419916": 3, "4221966": 3, "85477946": 3, "25227351": 3, "96312104": 3, "39770535": 3, "0401763": 3, "6414978": 3, "55821906": 3, "14829119": 3, "47269454": 3, "10152982": 3, "38256367": 3, "08807142": 3, "43429676": 3, "59181726": 3, "05120369": 3, "77512143": 3, "14463123": 3, "23983033": 3, "67143671": 3, "50082842": 3, "30584941": 3, "20683388": 3, "03483413": 3, "20720856": 3, "08598898": 3, "22080208": 3, "64865562": 3, "40682697": 3, "70122139": 3, "64175924": 3, "58143259": 3, "89952925": 3, "54536517": 3, "86749033": 3, "06019685": 3, "04449809": 3, "47050671": 3, "04282887": 3, "24454869": 3, "32891118": 3, "38437228": 3, "71091403": 3, "65667314": 3, "11566271": 3, "52706537": 3, "56474267": 3, "76715602": 3, "42312996": 3, "76080056": 3, "67036294": 3, "28564342": 3, "21110799": 3, "14839688": 3, "05283774": 3, "05478405": 3, "08082125": 3, "1447414": 3, "98462828": 3, "42112513": 3, "21974939": 3, "10592271": 3, "67658838": 3, "49570422": 3, "45793154": 3, "02752867": 3, "5590723": 3, "54126603": 3, "48664511": 3, "43764875": 3, "66773172": 3, "82481843": 3, "15349943": 3, "88049842": 3, "28931849": 3, "31243376": 3, "3452211": 3, "40682334": 3, "18493076": 3, "04839187": 3, "50253895": 3, "19130782": 3, "11088476": 3, "56778619": 3, "36271421": 3, "5242914": 3, "99162198": 3, "9547818": 3, "25692932": 3, "89856378": 3, "15281554": 3, "77735714": 3, "11311344": 3, "01051167": 3, "02134045": 3, "06119311": 3, "17510522": 3, "52670296": 3, "42278451": 3, "60418234": 3, "24963427": 3, "1611201": 3, "10664802": 3, "70071643": 3, "51691024": 3, "89998806": 3, "3590725": 3, "0173904": 3, "94144735": 3, "37182924": 3, "37866043": 3, "28597385": 3, "24976022": 3, "42612563": 3, "82950074": 3, "72487348": 3, "00682858": 3, "25268318": 3, "29240179": 3, "68332019": 3, "05155055": 3, "9316834": 3, "34874628": 3, "4050601": 3, "47131539": 3, "68665177": 3, "32277562": 3, "62515034": 3, "04049481": 3, "59094657": 3, "29061988": 3, "28060227": 3, "45655932": 3, "60961052": 3, "12862806": 3, "0491748": 3, "19942752": 3, "27318093": 3, "79095823": 3, "06471564": 3, "32490203": 3, "01371249": 3, "69586741": 3, "07780255": 3, "08082376": 3, "902882": 3, "40395368": 3, "57161503": 3, "6188732": 3, "79434534": 3, "33174975": 3, "08962046": 3, "40607314": 3, "28465644": 3, "0654673": 3, "99906271": 3, "14535375": 3, "31550719": 3, "49069006": 3, "73052807": 3, "31724964": 3, "01639082": 3, "97773904": 3, "77949826": 3, "90806883": 3, "60840415": 3, "35765918": 3, "09470711": 3, "24921034": 3, "98871092": 3, "15249127": 3, "04587488": 3, "68114623": 3, "44485005": 3, "97479187": 3, "41527236": 3, "18904736": 3, "55784624": 3, "77663656": 3, "06626997": 3, "69748913": 3, "91203846": 3, "65645409": 3, "67068651": 3, "56675987": 3, "13570414": 3, "561949": 3, "00650889": 3, "20041901": 3, "01172908": 3, "006941": 3, "27228794": 3, "85989137": 3, "46663793": 3, "96448725": 3, "49410352": 3, "02103752": 3, "89929408": 3, "99124781": 3, "28788692": 3, "21738227": 3, "20578794": 3, "62613854": 3, "54711243": 3, "45468127": 3, "35998576": 3, "23620079": 3, "19631993": 3, "81886101": 3, "23891811": 3, "32009865": 3, "99200186": 3, "58326714": 3, "2244503": 3, "61884746": 3, "30593953": 3, "54655862": 3, "54046119": 3, "45128582": 3, "63043325": 3, "92726937": 3, "10223362": 3, "89663029": 3, "12669414": 3, "63684452": 3, "74616171": 3, "41006412": 3, "4589307": 3, "09501266": 3, "15033712": 3, "21188577": 3, "69703418": 3, "09822929": 3, "27225746": 3, "57391104": 3, "3775653": 3, "3247288": 3, "12052205": 3, "0951038": 3, "32710163": 3, "55808909": 3, "61767066": 3, "28774531": 3, "08037741": 3, "42380889": 3, "05488234": 3, "12340336": 3, "8862303": 3, "52472562": 3, "9497435": 3, "35200129": 3, "36531645": 3, "22484955": 3, "08386021": 3, "83386291": 3, "83839054": 3, "67436706": 3, "56586041": 3, "24858485": 3, "2514738": 3, "ad": [3, 5, 6, 7, 11], "straight": 3, "forward": 3, "effect": [3, 7, 10, 11], "stretch": [3, 7], "desir": [3, 7], "tempering_kwarg": [3, 4, 6], "control": [3, 4, 6, 7, 10, 11], "hood": 3, "thr": 3, "onc": [3, 4, 7, 10], "again": [3, 4, 7], "could": [3, 4, 5], "doe": [3, 9, 10], "actual": [3, 4, 7], "attach": [3, 6], "expon": 3, "pi_": 3, "rightarrow": 3, "probe": 3, "target": 3, "infti": 3, "between": [3, 4, 5, 6, 7, 8, 10, 11], "gradual": 3, "flatten": [3, 4, 9], "infinit": [3, 6], "multimod": 3, "improv": 3, "mix": [3, 6], "creat": [3, 6], "swap": [3, 5, 6, 7, 10], "rung": [3, 5], "ladder": [3, 4, 5, 10], "after": [3, 6, 7, 10, 11], "until": [3, 10], "reach": [3, 4, 10], "lowest": 3, "ensur": [3, 6, 7, 8], "higher": 3, "cold": 3, "alpha_t": 3, "l_": 3, "beta_1": 3, "beta_2": 3, "t_1": 3, "t_2": 3, "lower": [3, 4], "reflect": 3, "fill": [3, 6, 7, 9, 10, 11], "ensemble_pt": 3, "75": 3, "39it": [], "73": [], "56it": 3, "0x7fe518eeb640": [], "action": 3, "temp": [3, 4], "across": [3, 4, 5, 6, 9], "label": [3, 4], "warm": 3, "legend": [3, 4], "0x7fe4eeb56020": [], "abil": [3, 11], "variabl": [3, 4, 6, 11], "nest": [3, 7], "review": 3, "alpha_": 3, "text": [3, 4], "k": [3, 4], "cancel": 3, "denomin": [3, 6, 7], "_k": 3, "usual": [3, 5, 6, 7, 10], "reduc": [3, 4], "1d": [3, 5, 6, 9, 10], "inject": [3, 4], "determin": [3, 4, 5, 7, 10], "well": [3, 4, 10], "gaussian_puls": 3, "f_x": 3, "exp": [3, 4, 7], "combine_gaussian": 3, "param": [3, 4, 11], "templat": [3, 4], "zeros_lik": 3, "log_like_fn_gauss_puls": 3, "sigma": [3, 4], "axi": [3, 4, 7, 9, 11], "nleaves_min": [3, 4, 6, 7], "gauss": 3, "stream": [3, 6], "num": [3, 4, 6], "linspac": [3, 4], "gauss_inj_param": [3, 4], "nois": [3, 4], "randn": [3, 4], "len": [3, 4, 7, 8, 9], "color": [3, 4], "lightskyblu": 3, "crimson": [3, 4], "0x7fe5065d3a00": [], "seen": 3, "need": [3, 4, 6, 7, 9, 10, 11], "boolean": [3, 5, 7], "indic": [3, 5, 6, 7, 9, 10, 11], "being": [3, 6, 7, 9], "while": [3, 4, 9], "assum": [3, 4, 7, 11], "knowledg": 3, "everi": [3, 5, 6, 7, 11], "spread": [3, 4], "both": [3, 5, 9], "term": [3, 4, 7], "four": [3, 6], "put": [3, 9], "phase": 3, "verifi": [3, 10], "calcul": [3, 4, 5, 6, 7, 8, 11], "sig1": [3, 4], "0001": [3, 4], "correct": [3, 4, 7, 11], "nn": [3, 4], "unus": [3, 9], "continu": 3, "multivariate_norm": [3, 4], "proper": [3, 5, 6, 7, 9, 10], "bool": [3, 4, 5, 6, 7, 8, 9, 10, 11], "turn": [3, 7], "fals": [3, 4, 5, 6, 7, 8, 9, 11], "binari": [3, 7], "independ": [3, 7], "amplitud": [3, 4, 10], "max": [3, 4, 8], "01": [3, 4], "rj_move": [3, 4, 6], "stock": 3, "priorgenrj": 3, "00001": 3, "built": [3, 6, 8], "exist": 3, "entir": [3, 6], "avoid": [3, 4, 7], "redo": 3, "logp": [3, 6, 7, 10], "line": 3, "grab": 3, "behind": [3, 9], "reason": 3, "close": [3, 4], "due": 3, "267": 3, "48857258": 3, "273": 3, "13358068": 3, "272": 3, "04356318": 3, "41959181": 3, "269": 3, "65159976": 3, "45581292": 3, "0534354": 3, "21480317": 3, "270": 3, "17335397": 3, "268": 3, "79114293": 3, "97593006": 3, "76118281": 3, "97477874": 3, "96915067": 3, "44497304": 3, "55232307": 3, "69079155": 3, "13611008": 3, "266": 3, "317588": 3, "19035794": 3, "89498107": 3, "271": 3, "07519263": 3, "01364247": 3, "87074404": 3, "04982746": 3, "10216287": 3, "47561552": 3, "73825004": 3, "55984235": 3, "59669384": 3, "1644275": 3, "17686823": 3, "5530668": 3, "38471516": 3, "13810357": 3, "4965744": 3, "16336376": 3, "37273575": 3, "78843561": 3, "07926996": 3, "65635127": 3, "4524668": 3, "58696913": 3, "88671242": 3, "37498437": 3, "44936502": 3, "4546787": 3, "25432486": 3, "746439": 3, "53395912": 3, "78432036": 3, "09641939": 3, "51993913": 3, "03690593": 3, "47293353": 3, "13166208": 3, "3654575": 3, "4533991": 3, "76589766": 3, "67119754": 3, "70301053": 3, "05419472": 3, "85429247": 3, "34706671": 3, "61170665": 3, "35744037": 3, "49130951": 3, "41191836": 3, "275": 3, "34555909": 3, "63796847": 3, "91668611": 3, "75395295": 3, "265": 3, "89682062": 3, "78621765": 3, "99614319": 3, "0744601": 3, "66910539": 3, "02551726": 3, "96820568": 3, "10089077": 3, "36015159": 3, "91718124": 3, "58033431": 3, "98339743": 3, "82208208": 3, "73487149": 3, "30751278": 3, "16895186": 3, "30161": 3, "80287899": 3, "03261838": 3, "48740534": 3, "6325905": 3, "60035469": 3, "2688322": 3, "274": 3, "62821662": 3, "26778016": 3, "04032577": 3, "28884496": 3, "45920218": 3, "25519775": 3, "62892664": 3, "26285005": 3, "00766373": 3, "57983127": 3, "27398717": 3, "46784025": 3, "09344272": 3, "24621424": 3, "80982016": 3, "18463057": 3, "36312445": 3, "59373649": 3, "557759": 3, "87911261": 3, "02454376": 3, "93381068": 3, "278": 3, "98378996": 3, "83416176": 3, "05726244": 3, "02005355": 3, "09999743": 3, "06119558": 3, "00971489": 3, "12141711": 3, "14986569": 3, "14312728": 3, "72178265": 3, "78486633": 3, "33369975": 3, "45148378": 3, "87881376": 3, "72205688": 3, "82850441": 3, "57604611": 3, "79122124": 3, "35162949": 3, "59266883": 3, "114322": 3, "56048742": 3, "67914435": 3, "02251242": 3, "32624169": 3, "16921554": 3, "73743926": 3, "21583965": 3, "74454528": 3, "21673563": 3, "68519371": 3, "60927311": 3, "20377505": 3, "99209023": 3, "13139001": 3, "27709924": 3, "67000643": 3, "6973296": 3, "6495672": 3, "3549933": 3, "01571009": 3, "5950623": 3, "66516293": 3, "2000": [3, 4], "last_sampl": [3, 11], "26it": [], "57": [], "78it": 3, "bn": [3, 4], "arang": [3, 4], "pretti": 3, "bin": [3, 4], "sharex": 3, "ax_t": 3, "enumer": 3, "hist": [3, 4], "261": 3, "2302411532098": 3, "remov": [3, 4, 6, 7, 9, 11], "were": [3, 5, 6, 7], "anywher": 3, "nan": [3, 4, 5, 6, 9], "belong": [3, 6], "isnan": [3, 4], "axvlin": [3, 4], "sin": 3, "combine_sin": 3, "log_like_fn_gauss_and_sin": 3, "params_both": 3, "params_gauss": 3, "params_sin": 3, "none": [3, 4, 5, 6, 7, 8, 9, 10, 11], "sine_inj_param": 3, "0x7fe4f40ce320": [], "matric": 3, "One": [3, 4], "keep": [3, 4, 5, 6], "229": 3, "18441391": 3, "233": 3, "51872418": 3, "231": 3, "94801463": 3, "235": 3, "4050852": 3, "226": 3, "670966": 3, "232": 3, "71483467": 3, "99148863": 3, "40535129": 3, "22825659": 3, "230": 3, "16495346": 3, "228": 3, "29127145": 3, "74374649": 3, "49117628": 3, "25563257": 3, "862688": 3, "227": 3, "44352935": 3, "234": 3, "67849744": 3, "49859258": 3, "65579296": 3, "81069992": 3, "81377327": 3, "13945878": 3, "41654888": 3, "94783414": 3, "31522738": 3, "81615798": 3, "78817956": 3, "80534798": 3, "90524192": 3, "65212536": 3, "79128554": 3, "40049869": 3, "24527916": 3, "05736224": 3, "238": 3, "63570222": 3, "43650992": 3, "70464801": 3, "34328242": 3, "12956141": 3, "26914673": 3, "26442866": 3, "47503056": 3, "56851138": 3, "37430551": 3, "93271986": 3, "38850202": 3, "53092761": 3, "03556521": 3, "54049548": 3, "99913862": 3, "53777598": 3, "16530309": 3, "35808751": 3, "22674918": 3, "15827365": 3, "236": 3, "00134375": 3, "68397539": 3, "24369726": 3, "68966882": 3, "59454795": 3, "95358162": 3, "82307944": 3, "14353803": 3, "14890501": 3, "15227879": 3, "64013278": 3, "89132475": 3, "37202006": 3, "71900568": 3, "70720334": 3, "98768038": 3, "11278035": 3, "33877408": 3, "241": 3, "12287975": 3, "40874977": 3, "84468334": 3, "2095918": 3, "99834849": 3, "10304391": 3, "32449253": 3, "1865482": 3, "04713397": 3, "82592779": 3, "51721312": 3, "95258359": 3, "80694449": 3, "14420069": 3, "90414617": 3, "609932": 3, "10522529": 3, "85522437": 3, "68349989": 3, "10665679": 3, "19997595": 3, "44616622": 3, "85330281": 3, "27875953": 3, "58673313": 3, "10932674": 3, "29296705": 3, "95788218": 3, "0866977": 3, "30264265": 3, "82346604": 3, "72494204": 3, "28165905": 3, "15989341": 3, "29506362": 3, "50970622": 3, "71630602": 3, "12739788": 3, "63811447": 3, "83828594": 3, "67742849": 3, "6620161": 3, "63551634": 3, "32572285": 3, "24280784": 3, "38914285": 3, "14806505": 3, "23356207": 3, "67103428": 3, "237": 3, "90881138": 3, "83466125": 3, "34757217": 3, "55405955": 3, "77788649": 3, "20798465": 3, "09701881": 3, "44980698": 3, "98678903": 3, "26528224": 3, "38754856": 3, "85794747": 3, "22487614": 3, "95102489": 3, "95030022": 3, "22226315": 3, "56264544": 3, "59721156": 3, "90934207": 3, "26628503": 3, "59759858": 3, "18117692": 3, "3581854": 3, "89490619": 3, "35931607": 3, "58448115": 3, "42531875": 3, "79614919": 3, "43853536": 3, "59733154": 3, "00377491": 3, "39675954": 3, "79924613": 3, "68628461": 3, "18445055": 3, "21994604": 3, "56782994": 3, "51977065": 3, "89946916": 3, "0x7fe51c85be20": [], "0x7fe51c858970": [], "5000": 3, "46": [3, 4], "64it": [], "03": [3, 4], "67it": [], "nleaves_gauss": 3, "nleaves_sin": 3, "histtyp": [3, 4], "218": 3, "81128464457336": [], "0x7fe51c85b1c0": [], "41": 3, "three": 3, "tier": 3, "origin": [3, 7, 10], "inherit": [3, 7], "custom": [3, 9], "recommend": [3, 11], "variou": [3, 11], "guidanc": 3, "guid": 3, "hous": 3, "appli": [3, 5, 6, 9], "univers": 3, "execut": 3, "Their": 3, "simultan": [3, 7, 9], "without": [3, 8], "half": 3, "strategi": 3, "instead": [3, 6], "ideal": [3, 10], "infrequ": 3, "adjust": [3, 5, 7, 10], "implem": 3, "distil": 3, "rest": [3, 7], "apparatu": 3, "featur": [3, 10], "handl": [3, 4, 6, 7], "effici": [3, 11], "ineffici": 3, "sub": [3, 7], "consecut": [3, 11], "str": [3, 5, 6, 7, 9], "list": [3, 4, 5, 6, 7, 8, 9, 10], "complet": [3, 7, 9], "customiz": [3, 7], "separ": [3, 6, 7], "string": [3, 4, 5, 6, 7, 9, 10], "entri": [3, 6, 7, 11], "possibl": [3, 6, 7], "loop": [3, 4, 7], "final": [3, 7, 11], "multimodel": 3, "okai": 3, "still": [3, 9], "uncertain": 3, "sake": 3, "togeth": [3, 6], "happen": [3, 10], "alreadi": [3, 4], "gibbs_sampling_gauss": 3, "gauss_mov": 3, "gibbs_sampling_sin": 3, "j": [3, 4], "els": [3, 4, 10], "sine_mov": 3, "live_danger": [3, 7], "80it": [], "02": [3, 4], "07": 4, "91it": [], "bit": [3, 4], "usag": [3, 11], "primari": [3, 7], "incom": [3, 7], "likeihood": 3, "done": [3, 4, 6], "lambda": [3, 4], "transform1": 3, "parameter_transform": [3, 11], "fill_dict": [3, 11], "ndim_ful": [3, 11], "fill_ind": [3, 4, 11], "tc": 3, "copi": [3, 4, 9, 11], "transpos": [3, 4, 11], "return_transpos": [3, 11], "08632139e": 3, "60690240e": 3, "63677136e": 3, "58243638e": 3, "80742172e": 3, "48770106e": 3, "02414318e": 3, "89070565e": 3, "86317944e": 3, "01564690e": 3, "49361582e": 3, "56981225e": 3, "94908920e": 3, "00253015e": 3, "23719336e": 3, "87255692e": 3, "37599338e": 3, "58987515e": 3, "79614705e": 3, "08905403e": 3, "22267309e": 3, "51960831e": 3, "23844069e": 3, "12780791e": 3, "37857796e": 3, "84607425e": 3, "84959593e": 3, "08592238e": 3, "16380935e": 3, "08854514e": 3, "30413168e": 3, "31256326e": 3, "34037374e": 3, "05454840e": 3, "62439129e": 3, "84600597e": 3, "24216204e": 3, "06322747e": 3, "75257330e": 3, "74410851e": 3, "45103260e": 3, "66617563e": 3, "48807142e": 3, "56103307e": 3, "11942710e": 3, "44459923e": 3, "25724889e": 3, "33740431e": 3, "17776377e": 3, "82212428e": 3, "49504813e": 3, "95427799e": 3, "14969458e": 3, "49931778e": 3, "89265702e": 3, "07244991e": 3, "59844209e": 3, "26106580e": 3, "55348884e": 3, "11968757e": 3, "68043826e": 3, "77305089e": 3, "66041776e": 3, "76826266e": 3, "13514357e": 3, "38412535e": 3, "42595049e": 3, "56575620e": 3, "41786990e": 3, "45874529e": 3, "59544048e": 3, "07643756e": 3, "52261347e": 3, "85639886e": 3, "39958883e": 3, "60259798e": 3, "66728050e": 3, "24611324e": 3, "58938201e": 3, "44091817e": 3, "96698636e": 3, "20763907e": 3, "94697741e": 3, "86247016e": 3, "62115825e": 3, "27619947e": 3, "09242661e": 3, "93964027e": 3, "24119921e": 3, "74513725e": 3, "10515031e": 3, "64960010e": 3, "52019359e": 3, "12740824e": 3, "01697213e": 3, "75147057e": 3, "09947418e": 3, "47948976e": 3, "69171203e": 3, "29903074e": 3, "53327624e": 3, "35885257e": 3, "32717307e": 3, "35665810e": 3, "34783920e": 3, "33242669e": 3, "70990891e": 3, "79490240e": 3, "79389285e": 3, "26540813e": 3, "54783570e": 3, "47058272e": 3, "28099189e": 3, "01873553e": 3, "12558722e": 3, "83776685e": 3, "91206004e": 3, "97988870e": 3, "17266233e": 3, "35938756e": 3, "lnprob": 3, "x1": [3, 4, 6], "group1": [3, 4, 6], "x2": [3, 4], "group2": [3, 4], "transform_contain": 3, "x_i": 3, "zip": [3, 4], "parameter_transforms1": 3, "parameter_transforms2": 3, "fill_dict1": 3, "fill_dict2": 3, "via": [3, 6], "02075611e": 3, "02727006e": 3, "00000000e": [3, 4], "13876888e": 3, "21750379e": 3, "63032269e": 3, "41364936e": 3, "82839215e": 3, "82998951e": 3, "53754004e": 3, "41882314e": 3, "59755871e": 3, "92949537e": 3, "08356812e": 3, "08432157e": 3, "46321356e": 3, "31341683e": 3, "40498524e": 3, "76316883e": 3, "33995872e": 3, "86607916e": 3, "57888534e": 3, "25180693e": 3, "62038136e": 3, "84363621e": 3, "09868405e": 3, "22000724e": 3, "87755596e": 3, "80796598e": 3, "63922890e": 3, "51618456e": 3, "98930985e": 3, "67700223e": 3, "52682127e": 3, "08536016e": 3, "31094294e": 3, "49908409e": 3, "51746200e": 3, "67337853e": 3, "39781914e": 3, "36167947e": 3, "65103017e": 3, "06673412e": 3, "27410329e": 3, "36771859e": 3, "11948520e": 3, "96697065e": 3, "87492837e": 3, "15992865e": 3, "06106851e": 3, "71165012e": 3, "31258185e": 3, "27268892e": 3, "22800190e": 3, "36001607e": 3, "44901909e": 3, "99355743e": 3, "75798659e": 3, "12911347e": 3, "25605562e": 3, "52691391e": 3, "70568429e": 3, "14485121e": 3, "27961647e": 3, "23105790e": 3, "96911344e": 3, "91366683e": 3, "20239492e": 3, "89449059e": 3, "55766542e": 3, "35588882e": 3, "56631090e": 3, "53459398e": 3, "01526637e": 3, "47101948e": 3, "60993882e": 3, "32430001e": 3, "15162482e": 3, "48120893e": 3, "01301454e": 3, "56145377e": 3, "80942539e": 3, "10765086e": 3, "55909099e": 3, "57522429e": 3, "04203362e": 3, "08070163e": 3, "98213105e": 3, "39454748e": 3, "19214547e": 3, "40650911e": 3, "16413152e": 3, "35632698e": 3, "63025658e": 3, "37687786e": 3, "02628232e": 3, "51501868e": 3, "72271287e": 3, "82068959e": 3, "21476682e": 3, "24122456e": 3, "18553959e": 3, "01434754e": 3, "38874332e": 3, "64379851e": 3, "11499059e": 3, "37829927e": 3, "00684311e": 3, "81023241e": 3, "46053035e": 3, "42042825e": 3, "75255769e": 3, "06469854e": 3, "69261136e": 3, "30689283e": 3, "81367142e": 3, "63242623e": 3, "93730454e": 3, "03084230e": 3, "07013775e": 3, "13635829e": 3, "21678060e": 3, "00032214e": 3, "89371770e": 3, "59844069e": 3, "39985157e": 3, "95887822e": 3, "02129869e": 3, "22223650e": 3, "92677176e": 3, "99364556e": 3, "88707487e": 3, "22902035e": 3, "52464049e": 3, "49669920e": 3, "50811847e": 3, "22855575e": 3, "78545112e": 3, "01431916e": 3, "06786939e": 3, "21074325e": 3, "02628236e": 3, "21973235e": 3, "43413861e": 3, "44449384e": 3, "71803485e": 3, "51851733e": 3, "46613915e": 3, "62531485e": 3, "77474391e": 3, "27060011e": 3, "06155817e": 3, "66806329e": 3, "91302812e": 3, "62315982e": 3, "57017190e": 3, "90671062e": 3, "76540850e": 3, "73521470e": 3, "03881446e": 3, "80200744e": 3, "01449722e": 3, "88268694e": 3, "14821162e": 3, "35715060e": 3, "34472211e": 3, "59493525e": 3, "35923672e": 3, "72485827e": 3, "81193853e": 3, "66683516e": 3, "22249706e": 3, "81045587e": 3, "83590629e": 3, "80074269e": 3, "30521327e": 3, "50867019e": 3, "85469474e": 3, "31847040e": 3, "05376264e": 3, "87792366e": 3, "94922165e": 3, "09566965e": 3, "19092082e": 3, "34696638e": 3, "08195111e": 3, "41405587e": 3, "99578765e": 3, "91657567e": 3, "25636709e": 3, "83607342e": 3, "33607709e": 3, "18750844e": 3, "60778216e": 3, "73751571e": 3, "08492502e": 3, "80209792e": 3, "66468666e": 3, "11461587e": 3, "54591363e": 3, "42276044e": 3, "15088121e": 3, "63183959e": 3, "17278909e": 3, "66244840e": 3, "34436394e": 3, "87594207e": 3, "85351652e": 3, "07228765e": 3, "38321860e": 3, "24509662e": 3, "30999341e": 3, "01378376e": 3, "28474753e": 3, "76497701e": 3, "46788632e": 3, "93483431e": 3, "72443113e": 3, "94829755e": 3, "90424481e": 3, "26806506e": 3, "30778859e": 3, "39320004e": 3, "17337329e": 3, "16975520e": 3, "71584940e": 3, "13700788e": 3, "14224688e": 3, "44053671e": 3, "57785197e": 3, "44352584e": 3, "08684450e": 3, "69255661e": 3, "21332377e": 3, "06559176e": 3, "67692851e": 3, "91841518e": 3, "62891052e": 3, "90707385e": 3, "85404272e": 3, "11760201e": 3, "52200640e": 3, "49409538e": 3, "37689084e": 3, "27441272e": 3, "44706362e": 3, "92012298e": 3, "78031465e": 3, "60929867e": 3, "39059657e": 3, "20317506e": 3, "77252523e": 3, "83156146e": 3, "84346745e": 3, "43270561e": 3, "31445281e": 3, "49834221e": 3, "50797949e": 3, "48447339e": 3, "16676244e": 3, "82139808e": 3, "26300647e": 3, "21061236e": 3, "00085086e": 3, "34126062e": 3, "23811796e": 3, "82912989e": 3, "08120073e": 3, "01083356e": 3, "74011782e": 3, "46993361e": 3, "01741438e": 3, "64481168e": 3, "53678102e": 3, "68002040e": 3, "47414565e": 3, "97502336e": 3, "33866045e": 3, "67242783e": 3, "86238145e": 3, "30605397e": 3, "dist": 3, "45": 3, "prior_val": 3, "boundari": [3, 6], "condit": [3, 6], "item": [3, 4, 6, 7], "frequenc": [3, 4], "offset": 3, "params_before_1": 3, "params_before_2": 3, "should": [3, 4, 5, 6, 7, 9, 10], "params_after_1": 3, "1405977954259794": 3, "282539820143316": 3, "declar": [3, 6], "them": [3, 6, 7, 9, 11], "__call__": [3, 11], "signatur": [3, 6], "part": [3, 11], "anyth": [3, 7, 9], "interv": 3, "update_iter": [3, 4, 6], "ton": [3, 4], "converg": [3, 5, 11], "criterion": [3, 6], "47": 3, "48": 3, "50": [3, 4, 11], "n_iter": [3, 11], "verbos": [3, 4, 7, 11], "stopping_fn": [3, 6], "stopping_iter": [3, 6], "3766": 3, "31678229": 3, "2278": 3, "39604335": 3, "4059": 3, "02192642": 3, "2144": 3, "19798244": 3, "998": 3, "28824411": 3, "1428": 3, "11763617": 3, "1849": 3, "86261277": 3, "395": 3, "82800654": 3, "3538": 3, "16264136": 3, "2386": 3, "93883948": 3, "2649": 3, "90937541": 3, "1946": 3, "19356638": 3, "2282": 3, "89975813": 3, "1547": 3, "48615372": 3, "1204": 3, "51547451": 3, "649": 3, "74890771": 3, "3215": 3, "08254415": 3, "1425": 3, "56101932": 3, "2921": 3, "47148738": 3, "1583": 3, "96524582": 3, "1384": 3, "47935102": 3, "1485": 3, "917688": 3, "1522": 3, "66935955": 3, "1244": 3, "37480478": 3, "1501": [3, 10], "36183826": 3, "2138": 3, "88955728": 3, "713": 3, "31326984": 3, "1724": 3, "38252192": 3, "967": 3, "74170929": 3, "616": 3, "752707": 3, "1944": 3, "30173589": 3, "1440": 3, "93342643": 3, "1298": 3, "02439483": 3, "1686": 3, "88049192": 3, "1388": 3, "22694244": 3, "89": 3, "51421123": 3, "1286": 3, "28705614": 3, "1377": 3, "81556495": 3, "1310": 3, "65173531": 3, "2833": 3, "47977965": 3, "3491": 3, "52561205": 3, "641": 3, "48222829": 3, "1573": 3, "34755124": 3, "1381": 3, "71501128": 3, "2655": 3, "19429871": 3, "1335": 3, "47251394": 3, "3695": 3, "80574539": 3, "1375": 3, "33229211": 3, "2972": 3, "09945822": 3, "1740": 3, "7113659": 3, "1313": 3, "41740737": 3, "545": 3, "05618362": 3, "1271": 3, "52780167": 3, "3677": 3, "68425215": 3, "1458": 3, "42786266": 3, "621": 3, "36007203": 3, "94778516": 3, "862": 3, "26458892": 3, "3376": 3, "97052939": 3, "2738": 3, "30382482": 3, "2396": 3, "04714838": 3, "3847": 3, "0369564": 3, "2467": 3, "72846803": 3, "2601": 3, "9956732": 3, "2930": 3, "49147807": 3, "2987": 3, "61151173": 3, "3122": 3, "68430004": 3, "2749": 3, "51246169": 3, "723": 3, "57849073": 3, "1469": 3, "36411184": 3, "1917": 3, "57389757": 3, "1197": 3, "33797897": 3, "1442": 3, "27625541": 3, "2245": 3, "68914219": 3, "1338": 3, "98687076": 3, "1862": 3, "77573979": 3, "2189": 3, "02815502": 3, "1591": 3, "92946993": 3, "1359": 3, "46554231": 3, "3003": 3, "49085676": 3, "1796": 3, "38296258": 3, "2975": 3, "3466723": 3, "3485": 3, "79013489": 3, "2857": 3, "09434732": 3, "2081": 3, "60939944": 3, "2558": 3, "43513486": 3, "2254": 3, "20797938": 3, "3483": 3, "18026064": 3, "3652": 3, "11045454": 3, "3119": 3, "6491669": 3, "2595": 3, "00784266": 3, "854": 3, "86242004": 3, "2141": 3, "24458421": 3, "1239": 3, "27101919": 3, "2207": 3, "80400398": 3, "1115": 3, "71944662": 3, "1845": 3, "7570246": 3, "3039": 3, "2483924": 3, "875": 3, "96968329": 3, "1025": 3, "23204354": 3, "02585093": 3, "313": [], "06it": [], "61": 4, "301": [], "09it": [], "best": [3, 4, 11], "06567225433396463": 3, "150": 3, "300": 6, "60it": [], "nicer": 4, "mpl": 4, "rcparam": 4, "linewidth": 4, "font": 4, "famili": 4, "serif": 4, "fontsiz": 4, "mathtext": 4, "fontset": 4, "stix": 4, "usetex": 4, "chainconsum": 4, "interpol": 4, "noisi": 4, "figur": 4, "attempt": [4, 6], "nubmer": 4, "synthet": 4, "lowlim": 4, "low": [4, 7, 10], "highlim": 4, "high": [4, 10], "npuls": 4, "dx": 4, "get": [4, 5, 6, 7, 8, 9], "discrit": 4, "mgrid": 4, "grid": 4, "amp": 4, "edg": 4, "border": 4, "inj_coordin": 4, "gather": [4, 8], "aa": 4, "xy": 4, "87454012": 4, "67064809": 4, "51855763": 4, "45071431": 4, "31908225": 4, "60257423": 4, "23199394": 4, "09080052": 4, "06552784": 4, "09865848": 4, "13212411": 4, "39610291": 4, "65601864": 4, "0888797": 4, "34033376": 4, "65599452": 4, "78964632": 4, "76809823": 4, "55808361": 4, "32568562": 4, "13821051": 4, "36617615": 4, "70288025": 4, "56281538": 4, "10111501": 4, "80521949": 4, "22775101": 4, "20807258": 4, "4786331": 4, "2567934": 4, "remind": 4, "sigma_det": 4, "det": 4, "sigma_inv": 4, "norm": 4, "sqrt": 4, "gaussian_flat": 4, "po": 4, "empti": [4, 5], "einsum": 4, "vector": [4, 6, 7], "fac": 4, "kl": 4, "breakpoint": 4, "expand_dim": 4, "log_prob_fn": 4, "gauss_out": 4, "num_group": 4, "int": [4, 5, 6, 7, 8, 9, 10, 11], "inds1": 4, "given_sign": 4, "squeez": 4, "sig": 4, "atleast_2d": 4, "llh": 4, "sigma_nois": 4, "nosi": 4, "varianc": [4, 5, 11], "cm": 4, "figsiz": 4, "121": 4, "cf": 4, "contourf": 4, "cmap": 4, "pubu": 4, "scatter": 4, "marker": 4, "dc143c": 4, "colorbar": 4, "xlabel": 4, "ylabel": 4, "122": 4, "configur": [4, 6], "manner": 4, "did": 4, "simpler": 4, "dynam": 4, "don": [4, 6], "000001": 4, "nleaf": 4, "0000001": 4, "kk": 4, "randint": 4, "inds_temp": 4, "inds_fix": 4, "ind1": 4, "ind2": 4, "coords_in": 4, "groups_in": 4, "log_prob": 4, "remain": [4, 7], "begin": 4, "might": 4, "burnin": 4, "result": [4, 5, 6, 9], "ight": 4, "minut": 4, "ndim_max": 4, "provide_group": [4, 6], "plot_iter": [4, 6], "01it": 4, "41it": [3, 4], "0x7ff61a97edc0": 4, "get_clean_chain": 4, "extract": 4, "nanind": 4, "logical_not": 4, "samples_in": 4, "init": 4, "givenparam": 4, "discard": [4, 5, 6], "pulse_paramet": 4, "noise_paramet": 4, "sigma_": 4, "mathrm": 4, "samples_puls": 4, "samples_nois": 4, "add_chain": 4, "6495ed": 4, "bar_shad": 4, "tick_font_s": 4, "label_font_s": 4, "max_tick": 4, "ii": 4, "add_mark": 4, "marker_styl": 4, "marker_s": 4, "plotter": 4, "warn": [4, 6], "been": [4, 5, 6, 7, 11], "good": 4, "load": [4, 6], "analysi": 4, "constrain": 4, "orang": 4, "get_clean_k_chain": 4, "k_chain": 4, "gauss_k_chain_baselin": 4, "lw": 4, "hatch": 4, "linestyl": 4, "xtick": 4, "ytick": 4, "xlim": 4, "section": 4, "fit": [4, 6], "spectrum": 4, "agnost": 4, "motiv": 4, "free": 4, "knot": 4, "situat": 4, "spectral": 4, "lot": 4, "window": [4, 11], "importantli": 4, "psd": 4, "invorm": 4, "lpsd": 4, "measur": 4, "durat": 4, "cadenc": 4, "sampler": [4, 5, 6, 7, 9, 10], "tob": 4, "1e6": 4, "dt": 4, "delta": 4, "ndata": 4, "tvec": 4, "df": 4, "simul": [4, 5, 11], "seri": [4, 11], "domain": 4, "start": [4, 11], "theoret": 4, "requenc": 4, "nfft": 4, "fvec": 4, "smooth": 4, "fstar": 4, "8e": 4, "n1": 4, "n2": 4, "noisemodel": 4, "1e": [4, 6], "hte": 4, "sn": 4, "var": 4, "folder": 4, "yz": 4, "xf637mpx56g2dvdv9d8v1fnm0000gn": 4, "ipykernel_3250": 4, "1282363938": 4, "py": [4, 11], "runtimewarn": 4, "divid": 4, "encount": 4, "true_divid": 4, "power": 4, "conveni": 4, "gentimeseriesfrompsd": 4, "welchpsd": 4, "ifft": 4, "ing": 4, "welch": 4, "nav": 4, "tndata": 4, "format": 4, "my_data": 4, "f20": 4, "s20": 4, "win": 4, "nuttall4c": 4, "fr1": 4, "s1": 4, "1000000": 4, "100000": 4, "06": 4, "save": [4, 5, 9], "computat": 4, "averag": [4, 7, 11], "frequeni": 4, "pre": 4, "tcheck": 4, "f0": 4, "f1": 4, "5e": 4, "fl": 4, "sl": 4, "sle": 4, "kav": 4, "kde": 4, "jde": 4, "200": 4, "flim": 4, "nuttall4b": 4, "winalpha": 4, "olap": 4, "errryp": 4, "std": 4, "doplot": 4, "err": 4, "absolut": 4, "loglog": 4, "grei": 4, "cornflowerblu": 4, "errorbar": 4, "yerr": 4, "fmt": 4, "logpsd": 4, "my": 4, "ylim": 4, "1e2": 4, "hz": 4, "loc": 4, "0x7ff62dd829d0": 4, "maxmodel": 4, "backendnam": 4, "a_test": 4, "investig": 4, "concern": 4, "respect": [4, 6, 7, 11], "simpli": 4, "restrict": 4, "band": 4, "i_band": 4, "mx": 4, "mn": 4, "2400506683151953": 4, "7418475507541406": 4, "easier": [4, 11], "futur": 4, "fr": 4, "dim": 4, "dd": 4, "edges_starting_param": 4, "indx": 4, "hadl": 4, "splinelikelihood": 4, "__init__": [3, 4, 8], "self": [3, 4, 5, 7, 8, 9, 10, 11], "freq": 4, "inf": [4, 6, 7, 8, 10, 11], "1e14": 4, "expmax": 4, "kind": 4, "cubic": 4, "ftol": 4, "periodogram": 4, "ndarrai": [3, 4, 5, 6, 7, 8, 9, 10, 11], "nf": 4, "float": [4, 7, 10, 11], "diverg": 4, "exponenti": 4, "infin": 4, "toler": 4, "proxim": 4, "logspac": 4, "_nseg": 4, "_n": 4, "logfr": 4, "discret": 4, "fourier": 4, "normal": [3, 4, 11], "get_noise_psd_model": 4, "psd_model": 4, "interp1d": 4, "consid": [4, 6, 9], "intern": [4, 6], "internal_knots_paramet": 4, "control_points_edg": 4, "control_point": 4, "log_psd_model": 4, "v": 4, "knots_i": 4, "control_points_i": 4, "inds2": 4, "control_points_edges_i": 4, "knots_list": 4, "control_pt": 4, "interp_model": 4, "bounds_error": 4, "extrapol": 4, "assume_sort": 4, "prevent": [4, 6], "overflow": 4, "i_ov": 4, "normalis": 4, "log2pi": 4, "nan_to_num": 4, "isfinit": 4, "instanti": 4, "psdlike": 4, "real": 4, "05": 4, "liekev": 4, "29905751e": 4, "37617254e": 4, "30751294e": 4, "31923024e": 4, "31360092e": 4, "32508567e": 4, "45639724e": 4, "46121449e": 4, "h5": [4, 5], "finish": 4, "184": 4, "53": 4, "85it": 4, "1577252010": 4, "111": 4, "114": 4, "invalid": [4, 7], "subtract": 4, "anaconda3": 4, "lib": 4, "python3": 4, "site": 4, "core": 4, "fromnumer": 4, "86": 4, "ufunc": 4, "obj": [4, 7, 11], "passkwarg": 4, "612": 4, "51": 4, "11it": 4, "multipli": [4, 5, 6], "52": 4, "54it": 4, "911": 4, "08it": 4, "baseline_run_backend": 4, "disk": 4, "ndim_knot": 4, "ndim_edg": 4, "samples_knot": 4, "samples_edg": 4, "paramnam": 4, "f_": 4, "s_": 4, "plot_hist": 4, "ff": 4, "ax_list": 4, "becasu": 4, "chaincnsum": 4, "annoyinh": 4, "knots_k_chain": 4, "annoi": 4, "prob": 4, "rect": 4, "facecolor": 4, "edgecolor": 4, "upper": 4, "sim": 4, "fin": 4, "memori": [5, 6, 7], "doubl": [5, 6, 7, 8, 9], "float64": 5, "latter": 5, "track": [5, 6], "nblob": [5, 6, 9], "4d": [5, 9], "5d": 5, "locat": 5, "relev": 5, "clear": 5, "maxim": [5, 6], "pair": [5, 6], "attribut": [5, 6, 7, 11], "slice_v": [5, 6], "streamlin": 5, "slice": [5, 6, 9], "non": [5, 6, 11], "hdf5": [5, 6], "particularli": [5, 6], "larg": [5, 6, 7, 11], "subset": [5, 6, 7], "autocorrel": [5, 6, 11], "correl": 5, "among": 5, "legnth": 5, "attributeerror": 5, "recent": [5, 6], "all_temp": [5, 6], "multiply_thin": [5, 6], "minumum": [5, 6], "autocorr": [5, 6], "integrated_tim": [5, 6], "return_error": 5, "therodynam": 5, "ss_kwarg": 5, "error": [5, 7, 11], "thermodynam": [5, 11], "receiv": 5, "logz": [5, 11], "dlogz": [5, 11], "doprint": 5, "psrf_kwarg": 5, "gelman": [5, 11], "rubin": [5, 11], "diagnost": [5, 11], "approach": [5, 11], "monitor": [5, 11], "deviat": [5, 7, 11], "rhat": [5, 11], "uniti": [5, 11], "brook": [5, 11], "sp": [5, 11], "1998": [5, 11], "graphic": [5, 11], "434": [5, 11], "455": [5, 11], "db": [5, 11], "1992": [5, 11], "sequenc": [5, 6, 11], "scienc": [5, 11], "457": [5, 11], "511": [5, 11], "nsampl": 5, "trace": [5, 11], "flag": [5, 11], "screen": 5, "tabl": 5, "rhat_all_branch": 5, "ngrow": 5, "expand": 5, "moves_accepted_fract": 5, "whether": [5, 6, 7], "filenam": 5, "read_onli": 5, "compress": 5, "compression_opt": 5, "h5py": 5, "instal": 5, "throw": 5, "runtimeerror": [5, 7], "mode": [5, 7], "far": 5, "driver": 6, "provide_suppliment": 6, "pool": [6, 11], "dr_move": 6, "dr_max_it": [6, 7], "blobs_dtyp": 6, "plot_gener": 6, "plot_nam": 6, "update_fn": 6, "fill_zero_leaves_v": 6, "num_repeats_in_model": 6, "num_repeats_rj": 6, "track_mov": 6, "global": 6, "relat": [6, 8, 9, 10], "callabl": 6, "natur": 6, "logarithm": 6, "jimp": 6, "sent": 6, "x0": 6, "xn": 6, "xi": 6, "regard": 6, "group0": 6, "groupn": 6, "groupi": 6, "uniqu": [6, 10], "wil": 6, "params0": 6, "params1": 6, "params2": 6, "params3": 6, "groupsi": 6, "tutori": [6, 7, 9], "all_models_togeth": 6, "supp": [6, 10], "branch_supp": [6, 10], "model_": 6, "test": [6, 11], "map": [6, 8, 11], "randomli": [6, 7], "select": [6, 7, 10], "ot": 6, "delai": 6, "reject": 6, "birth": 6, "switch": [6, 7], "off": 6, "Not": 6, "yet": 6, "subclass": [6, 7], "serial": 6, "By": [6, 7, 9, 11], "written": 6, "medium": 6, "expect": 6, "treat": 6, "prefer": 6, "rate": 6, "specifi": [6, 10, 11], "criteria": 6, "met": 6, "contribut": 6, "1e300": 6, "analyz": 6, "interrupt": 6, "catch": 6, "reprent": 6, "own": 6, "valueerror": [6, 7, 8, 9, 10, 11], "startup": 6, "issu": [6, 7, 9], "practic": 6, "get_stat": 6, "mtrand": 6, "randomst": 6, "fail": [6, 7, 11], "silent": 6, "necessari": [3, 6, 7], "outsid": [6, 8, 10], "initial_st": 6, "skip_initial_state_check": 6, "yield": [6, 7], "greater": [6, 8, 10, 11], "made": [6, 7, 10], "fact": 6, "bar": [6, 11], "notabl": 6, "suitabl": 6, "jupyt": 6, "fulli": 6, "skip": [6, 7], "improp": [6, 10], "post_burn_upd": 6, "sinc": [6, 10], "never": 6, "evalut": 6, "correspond": [6, 11], "prevent_swap": 7, "skip_supp_names_upd": 7, "is_rj": 7, "random_se": 7, "share": 7, "hold": [7, 8], "amount": 7, "cupi": [7, 8, 9, 11], "incorrect": [7, 8, 9], "all_branch_nam": 7, "branch_names_run": 7, "inds_run": 7, "concurr": 7, "at_least_one_propos": 7, "least": 7, "new_ind": 7, "new_branch_supp": 7, "back": [7, 9], "correct_key_ord": 7, "logl": [7, 10, 11], "mesh": 7, "place": [7, 10], "old_stat": 7, "new_stat": 7, "mask": 7, "concret": 7, "get_propos": [3, 7], "standard": 7, "compat": 7, "notimplementederror": 7, "curent": 7, "carrier": 7, "cov_al": [3, 7], "scalar": 7, "isotrop": 7, "align": 7, "sequenti": 7, "uniformli": 7, "inconsist": 7, "generate_dist": 7, "nsplit": 7, "randomize_split": 7, "abc": [7, 11], "abstract": 7, "et": 7, "al": 7, "complementari": 7, "won": 7, "shuffl": 7, "smaller": 7, "twice": 7, "stuck": 7, "subspac": 7, "suppress": 7, "goe": 7, "dstndstn": 7, "wonder": 7, "terminologi": 7, "classmethod": [7, 11], "complement": 7, "gibbs_ndim": 7, "compliment": 7, "whose": 7, "return_gpu": 7, "affin": 7, "invari": 7, "wear": 7, "2010": 7, "redredbluemov": 7, "adjust_factor": 7, "ndims_old": 7, "ndims_new": 7, "broadcast": [7, 9], "choose_c_v": 7, "nc": 7, "random_number_gener": 7, "modular": 7, "get_new_point": 7, "c_temp": 7, "branch_shap": 7, "branch_i": 7, "mew": 7, "s_all": 7, "c_all": 7, "nfriend": 7, "n_iter_upd": 7, "complimentari": 7, "maintain": [7, 10], "friend": 7, "deafault": 7, "find_friend": 7, "s_ind": 7, "present": 7, "setup_friend": 7, "s_inds_al": 7, "math": [7, 11], "dr": 7, "fix_chang": 7, "nut": 7, "all_coord": 7, "all_ind": 7, "nleaves_min_al": 7, "nleaves_max_al": 7, "mark": 7, "ount": 7, "all_cord": 7, "flip": 7, "third": 7, "get_model_change_propos": 7, "reves": 7, "num_tri": 7, "tri": 7, "overwritten": 7, "mtdistgenrj": 7, "special_like_func": 7, "generated_coord": 7, "inds_leaves_rj": 7, "overwrit": 7, "args_lik": 7, "kwargs_lik": 7, "special_prior_func": 7, "args_prior": 7, "kwargs_prior": 7, "special_generate_func": 7, "fill_tupl": 7, "args_gener": 7, "auxillari": 7, "kwargs_gener": 7, "special_generate_logpdf": 7, "get_mt_log_posterior": 7, "readout_adjust": 7, "out_val": 7, "all_vals_prop": 7, "aux_all_v": 7, "elsewher": 7, "logp_out": 7, "ll_out": 7, "lp_out": 7, "log_proposal_pdf_out": 7, "log_sum_weight": 7, "log_proposal_pdf": 7, "aux_logp": 7, "aux_ll": 7, "aux_lp": 7, "aux_log_proposal_pdf": 7, "aux_log_sum_weight": 7, "get_mt_propos": 7, "ll_in": 7, "lp_in": 7, "inds_reverse_rj": 7, "come": [7, 11], "pretend": 7, "set_coords_and_ind": 7, "multipletrymoverj": 7, "throught": 7, "debug": 7, "arrang": 8, "miss": 8, "exactli": 8, "match": [8, 9], "even": 8, "care": [8, 10, 11], "lai": 8, "uniformdistribut": 8, "doc": [8, 9, 10], "loguniform": 8, "modifi": 8, "pdf": 8, "around": [9, 11], "branch_suppliment": 9, "metadata": 9, "lnpostfn": 9, "too": 9, "former": 9, "obhect": 9, "kept": 9, "wrong": 9, "less": 9, "obj_info": 9, "base_shap": 9, "dim2_extra": 9, "dim1_extra": 9, "beyond": 9, "whatev": 9, "delet": 9, "skip_nam": 9, "along": [9, 11], "stabl": 9, "arr": 9, "against": 9, "values_in": 9, "maint": 9, "effective_ndim": 10, "tmax": 10, "adapt": 10, "adaptation_lag": 10, "10000": 10, "adaptation_tim": 10, "stop_adapt": 10, "permut": 10, "skip_swap_supp_nam": 10, "act": 10, "basi": 10, "determ": 10, "lag": 10, "05823": 10, "adapation_tim": 10, "adap": 10, "assertionerror": 10, "incorrectli": 10, "mundan": 10, "except": 10, "re": 10, "singular": 10, "demand": 10, "attent": 10, "domin": 10, "wander": 10, "caus": 10, "discontinu": 10, "neighbor": 10, "cascad": 10, "perfrom": 10, "round": 10, "equiv": [10, 11], "geometr": 10, "safe": 10, "bet": 10, "long": 10, "willvousden": 10, "neither": 10, "nor": 10, "insuffici": 10, "ratio": 10, "periodic_in": 11, "p1": 11, "p2": 11, "base_transform": 11, "affect": 11, "oject": 11, "target_accept": 11, "supression_factor": 11, "max_chang": 11, "start_iter": 11, "maximunm": 11, "iters_consecut": 11, "past_like_best": 11, "compute_log_like_fn": 11, "compute_log_prior_fn": 11, "map_fn": 11, "member": 11, "convert": 11, "fast": 11, "fft": 11, "multidimension": 11, "largest": 11, "sokal": 11, "origind": 11, "quadratur": 11, "finit": 11, "un": 11, "thermodyman": 11, "langl": 11, "rangle_": 11, "int_0": 11, "approxim": 11, "block_len": 11, "1810": 11, "04488": 11, "pubm": 11, "ncbi": 11, "nlm": 11, "nih": 11, "gov": 11, "21187451": 11, "block": 11, "per_walk": 11, "separatelli": 11, "neff": 11, "od": 11, "taken": 11, "joergdietrich": 11, "diagon": 2, "277": 3, "20it": 3, "293": 3, "00it": 3, "0x14bf49370": 3, "99it": 3, "71": 3, "76it": 3, "0x14b68efc0": 3, "0x150d9b0e0": 3, "0x150babcb0": 3, "04": 3, "25it": 3, "0x14c6faf00": 3, "0x150160080": 3, "0x14f481d30": 3, "83it": 3, "58": 3, "94it": 3, "81128464457333": 3, "0x14c8938c0": 3, "layer": 3, "obvious": 3, "nonscaleddiagonalgaussianmov": 3, "assert": 3, "isinst": 3, "super": 3, "new_point": 3, "tmp": 3, "71it": 3, "49": 3, "286": 3, "24it": 3, "59": 3, "291": 3, "52it": 3, "288": 3}, "objects": {"eryn.backends": [[5, 0, 1, "", "Backend"], [5, 0, 1, "", "HDFBackend"]], "eryn.backends.Backend": [[5, 1, 1, "", "accepted"], [5, 1, 1, "", "betas"], [5, 1, 1, "", "blobs"], [5, 1, 1, "", "branch_names"], [5, 1, 1, "", "chain"], [5, 1, 1, "", "dtype"], [5, 2, 1, "", "get_a_sample"], [5, 2, 1, "", "get_autocorr_thin_burn"], [5, 2, 1, "", "get_autocorr_time"], [5, 2, 1, "", "get_betas"], [5, 2, 1, "", "get_blobs"], [5, 2, 1, "", "get_chain"], [5, 2, 1, "", "get_evidence_estimate"], [5, 2, 1, "", "get_gelman_rubin_convergence_diagnostic"], [5, 2, 1, "", "get_inds"], [5, 2, 1, "", "get_info"], [5, 2, 1, "", "get_last_sample"], [5, 2, 1, "", "get_log_like"], [5, 2, 1, "", "get_log_posterior"], [5, 2, 1, "", "get_log_prior"], [5, 2, 1, "", "get_move_info"], [5, 2, 1, "", "get_nleaves"], [5, 2, 1, "", "get_value"], [5, 2, 1, "", "grow"], [5, 2, 1, "", "has_blobs"], [5, 1, 1, "", "inds"], [5, 1, 1, "", "initiailized"], [5, 1, 1, "", "iteration"], [5, 1, 1, "", "log_like"], [5, 1, 1, "", "log_prior"], [5, 1, 1, "", "move_info"], [5, 1, 1, "", "move_keys"], [5, 1, 1, "", "nbranches"], [5, 1, 1, "", "ndims"], [5, 1, 1, "", "nleaves_max"], [5, 1, 1, "", "ntemps"], [5, 1, 1, "", "nwalkers"], [5, 2, 1, "", "reset"], [5, 1, 1, "", "reset_args"], [5, 2, 1, "", "reset_base"], [5, 1, 1, "", "reset_kwargs"], [5, 1, 1, "", "rj"], [5, 1, 1, "", "rj_accepted"], [5, 2, 1, "", "save_step"], [5, 3, 1, "", "shape"], [5, 1, 1, "", "store_missing_leaves"]], "eryn.backends.HDFBackend": [[5, 3, 1, "", "accepted"], [5, 3, 1, "", "branch_names"], [5, 2, 1, "", "get_a_sample"], [5, 2, 1, "", "get_autocorr_thin_burn"], [5, 2, 1, "", "get_autocorr_time"], [5, 2, 1, "", "get_betas"], [5, 2, 1, "", "get_blobs"], [5, 2, 1, "", "get_chain"], [5, 2, 1, "", "get_evidence_estimate"], [5, 2, 1, "", "get_gelman_rubin_convergence_diagnostic"], [5, 2, 1, "", "get_inds"], [5, 2, 1, "", "get_info"], [5, 2, 1, "", "get_last_sample"], [5, 2, 1, "", "get_log_like"], [5, 2, 1, "", "get_log_posterior"], [5, 2, 1, "", "get_log_prior"], [5, 2, 1, "", "get_move_info"], [5, 2, 1, "", "get_nleaves"], [5, 2, 1, "", "get_value"], [5, 2, 1, "", "grow"], [5, 2, 1, "", "has_blobs"], [5, 3, 1, "", "initialized"], [5, 3, 1, "", "iteration"], [5, 3, 1, "", "move_keys"], [5, 3, 1, "", "nbranches"], [5, 3, 1, "", "ndims"], [5, 3, 1, "", "nleaves_max"], [5, 3, 1, "", "ntemps"], [5, 3, 1, "", "nwalkers"], [5, 2, 1, "", "open"], [5, 3, 1, "", "random_state"], [5, 2, 1, "", "reset"], [5, 3, 1, "", "reset_args"], [5, 2, 1, "", "reset_base"], [5, 3, 1, "", "reset_kwargs"], [5, 3, 1, "", "rj"], [5, 3, 1, "", "rj_accepted"], [5, 2, 1, "", "save_step"], [5, 3, 1, "", "shape"], [5, 3, 1, "", "swaps_accepted"]], "eryn.ensemble": [[6, 0, 1, "", "EnsembleSampler"]], "eryn.ensemble.EnsembleSampler": [[6, 3, 1, "", "acceptance_fraction"], [6, 2, 1, "", "compute_log_like"], [6, 2, 1, "", "compute_log_prior"], [6, 2, 1, "", "get_autocorr_time"], [6, 2, 1, "", "get_betas"], [6, 2, 1, "", "get_blobs"], [6, 2, 1, "", "get_chain"], [6, 2, 1, "", "get_inds"], [6, 2, 1, "", "get_last_sample"], [6, 2, 1, "", "get_log_like"], [6, 2, 1, "", "get_log_posterior"], [6, 2, 1, "", "get_log_prior"], [6, 2, 1, "", "get_model"], [6, 2, 1, "", "get_nleaves"], [6, 2, 1, "", "get_value"], [6, 3, 1, "", "priors"], [6, 3, 1, "", "random_state"], [6, 2, 1, "", "reset"], [6, 3, 1, "", "rj_acceptance_fraction"], [6, 2, 1, "", "run_mcmc"], [6, 2, 1, "", "sample"], [6, 3, 1, "", "swap_acceptance_fraction"]], "eryn.moves": [[7, 0, 1, "", "CombineMove"], [7, 0, 1, "", "DistributionGenerate"], [7, 0, 1, "", "DistributionGenerateRJ"], [7, 0, 1, "", "GaussianMove"], [7, 0, 1, "", "GroupMove"], [7, 0, 1, "", "GroupStretchMove"], [7, 0, 1, "", "MHMove"], [7, 0, 1, "", "MTDistGenMove"], [7, 0, 1, "", "MTDistGenMoveRJ"], [7, 0, 1, "", "Move"], [7, 0, 1, "", "MultipleTryMove"], [7, 0, 1, "", "RedBlueMove"], [7, 0, 1, "", "ReversibleJumpMove"], [7, 0, 1, "", "StretchMove"]], "eryn.moves.CombineMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "acceptance_fraction_separate"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 3, 1, "", "periodic"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.DistributionGenerate": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.DistributionGenerateRJ": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_model_change_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.GaussianMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.GroupMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "choose_c_vals"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "find_friends"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_friends"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.GroupStretchMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "adjust_factors"], [7, 2, 1, "", "choose_c_vals"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "find_friends"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_new_points"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_friends"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.MHMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.MTDistGenMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_mt_log_posterior"], [7, 2, 1, "", "get_mt_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "readout_adjustment"], [7, 2, 1, "", "set_coords_and_inds"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 2, 1, "", "special_generate_func"], [7, 2, 1, "", "special_generate_logpdf"], [7, 2, 1, "", "special_like_func"], [7, 2, 1, "", "special_prior_func"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.MTDistGenMoveRJ": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_model_change_proposal"], [7, 2, 1, "", "get_mt_log_posterior"], [7, 2, 1, "", "get_mt_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "readout_adjustment"], [7, 2, 1, "", "set_coords_and_inds"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 2, 1, "", "special_generate_func"], [7, 2, 1, "", "special_generate_logpdf"], [7, 2, 1, "", "special_like_func"], [7, 2, 1, "", "special_prior_func"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.Move": [[7, 1, 1, "", "Note"], [7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 1, 1, "", "gibbs_sampling_setup"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 1, 1, "", "num_proposals"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"], [7, 1, 1, "", "use_gpu"], [7, 1, 1, "", "xp"]], "eryn.moves.MultipleTryMove": [[7, 2, 1, "", "get_mt_log_posterior"], [7, 2, 1, "", "get_mt_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "readout_adjustment"], [7, 2, 1, "", "special_generate_func"], [7, 2, 1, "", "special_generate_logpdf"], [7, 2, 1, "", "special_like_func"], [7, 2, 1, "", "special_prior_func"]], "eryn.moves.RedBlueMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.ReversibleJumpMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_model_change_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.StretchMove": [[7, 1, 1, "", "a"], [7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "adjust_factors"], [7, 2, 1, "", "choose_c_vals"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_new_points"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 1, 1, "", "return_gpu"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.tempering": [[10, 0, 1, "", "TemperatureControl"], [10, 4, 1, "", "make_ladder"]], "eryn.moves.tempering.TemperatureControl": [[10, 2, 1, "", "compute_log_posterior_tempered"], [10, 2, 1, "", "temper_comps"], [10, 2, 1, "", "temperature_swaps"], [10, 2, 1, "", "tempered_likelihood"]], "eryn.prior": [[8, 0, 1, "", "MappedUniformDistribution"], [8, 0, 1, "", "ProbDistContainer"], [8, 4, 1, "", "log_uniform"], [8, 4, 1, "", "uniform_dist"]], "eryn.prior.MappedUniformDistribution": [[8, 2, 1, "", "logpdf"], [8, 2, 1, "", "rvs"]], "eryn.prior.ProbDistContainer": [[8, 2, 1, "", "logpdf"], [8, 1, 1, "", "ndim"], [8, 2, 1, "", "ppf"], [8, 1, 1, "", "priors"], [8, 1, 1, "", "priors_in"], [8, 2, 1, "", "rvs"], [8, 1, 1, "", "use_cupy"]], "eryn.state": [[9, 0, 1, "", "Branch"], [9, 0, 1, "", "BranchSupplimental"], [9, 0, 1, "", "State"]], "eryn.state.Branch": [[9, 3, 1, "", "nleaves"]], "eryn.state.BranchSupplimental": [[9, 2, 1, "", "add_objects"], [9, 3, 1, "", "contained_objects"], [9, 3, 1, "", "flat"], [9, 1, 1, "", "holder"], [9, 2, 1, "", "put_along_axis"], [9, 2, 1, "", "remove_objects"], [9, 2, 1, "", "take_along_axis"]], "eryn.state.State": [[9, 3, 1, "", "branch_names"], [9, 3, 1, "", "branches_coords"], [9, 3, 1, "", "branches_inds"], [9, 3, 1, "", "branches_supplimental"], [9, 2, 1, "", "get_log_posterior"]], "eryn.utils": [[11, 0, 1, "", "AdjustStretchProposalScale"], [11, 0, 1, "", "PeriodicContainer"], [11, 0, 1, "", "SearchConvergeStopping"], [11, 0, 1, "", "Stopping"], [11, 0, 1, "", "TransformContainer"], [11, 0, 1, "", "Update"], [11, 5, 0, "-", "utility"]], "eryn.utils.AdjustStretchProposalScale": [[11, 2, 1, "", "__call__"]], "eryn.utils.PeriodicContainer": [[11, 2, 1, "", "distance"], [11, 2, 1, "", "wrap"]], "eryn.utils.SearchConvergeStopping": [[11, 2, 1, "", "__call__"], [11, 1, 1, "", "iters_consecutive"], [11, 1, 1, "", "past_like_best"]], "eryn.utils.Stopping": [[11, 2, 1, "", "__call__"]], "eryn.utils.TransformContainer": [[11, 2, 1, "", "both_transforms"], [11, 2, 1, "", "fill_values"], [11, 2, 1, "", "transform_base_parameters"]], "eryn.utils.Update": [[11, 2, 1, "", "__call__"]], "eryn.utils.utility": [[11, 4, 1, "", "get_acf"], [11, 4, 1, "", "get_integrated_act"], [11, 4, 1, "", "groups_from_inds"], [11, 4, 1, "", "psrf"], [11, 4, 1, "", "stepping_stone_log_evidence"], [11, 4, 1, "", "thermodynamic_integration_log_evidence"]]}, "objtypes": {"0": "py:class", "1": "py:attribute", "2": "py:method", "3": "py:property", "4": "py:function", "5": "py:module"}, "objnames": {"0": ["py", "class", "Python class"], "1": ["py", "attribute", "Python attribute"], "2": ["py", "method", "Python method"], "3": ["py", "property", "Python property"], "4": ["py", "function", "Python function"], "5": ["py", "module", "Python module"]}, "titleterms": {"eryn": [0, 2, 3, 4], "multi": [0, 2], "purpos": [0, 2], "mcmc": [0, 2, 3], "sampler": [0, 2, 3, 11], "get": [0, 2, 3], "start": [0, 2, 3], "prerequisit": [0, 2], "instal": [0, 2], "run": [0, 2], "test": [0, 2], "contribut": [0, 2], "version": [0, 2], "citat": [0, 2], "author": [0, 2], "contibutor": [0, 2], "licens": [0, 2], "acknowledg": [0, 2], "code": 1, "project": 1, "todo": 1, "welcom": 2, "": 2, "document": 2, "tutori": [2, 3], "gener": 2, "inform": 2, "basic": 3, "The": 3, "tree": 3, "metaphor": 3, "ensembl": [3, 6], "backend": [3, 5], "object": 3, "5": 3, "dimension": 3, "arrai": 3, "state": [3, 9], "branch": 3, "parallel": [3, 10], "temper": [3, 10], "add": 3, "revers": [3, 7], "jump": [3, 7], "model": [3, 11], "count": 3, "uncertainti": 3, "multipl": [3, 7], "move": [3, 7], "gibb": 3, "sampl": 3, "util": [3, 7, 11], "transform": 3, "contain": [3, 8, 11], "multivari": 3, "prior": [3, 8], "distribut": [3, 8], "period": [3, 11], "stop": [3, 11], "updat": [3, 11], "function": [3, 11], "more": 4, "advanc": 4, "exampl": [3, 4], "search": 4, "gaussian": 4, "puls": 4, "2d": 4, "choos": 4, "optim": 4, "b": 4, "spline": 4, "order": 4, "regular": 5, "hdf": 5, "parent": 7, "class": [7, 11], "metropoli": 7, "hast": 7, "mh": 7, "implement": [7, 11], "red": 7, "blue": 7, "group": 7, "mutlipl": 7, "try": 7, "rj": 7, "probabl": 8, "avail": 8, "transformcontain": 11, "base": 11, "other": 11, "diagon": 3, "covari": 3}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "nbsphinx": 4, "sphinx": 60}, "alltitles": {"Code Projects": [[1, "code-projects"]], "Code TODOs": [[1, "code-todos"]], "Backends": [[5, "backends"]], "Regular Backend": [[5, "regular-backend"]], "HDF Backend": [[5, "hdf-backend"]], "Ensemble": [[6, "ensemble"]], "Moves": [[7, "moves"], [3, "Moves"]], "Move Parent Class": [[7, "move-parent-class"]], "Metropolis-Hastings Moves": [[7, "metropolis-hastings-moves"]], "MH Parent Class": [[7, "mh-parent-class"]], "Implemented MH Moves": [[7, "implemented-mh-moves"]], "Red-Blue Moves": [[7, "red-blue-moves"]], "Red-Blue Parent Class": [[7, "red-blue-parent-class"]], "Implemented Red-Blue Moves": [[7, "implemented-red-blue-moves"]], "Group Moves": [[7, "group-moves"]], "Group Parent Class": [[7, "group-parent-class"]], "Implemented Group Moves": [[7, "implemented-group-moves"]], "Reversible Jump Moves": [[7, "reversible-jump-moves"]], "Reversible Jump Parent Class": [[7, "reversible-jump-parent-class"]], "Implemented Reversible Jump Moves": [[7, "implemented-reversible-jump-moves"]], "Mutliple Try Moves": [[7, "mutliple-try-moves"]], "Mutliple Try Parent Class": [[7, "mutliple-try-parent-class"]], "Implemented Multiple Try Moves": [[7, "implemented-multiple-try-moves"]], "Implemented Multiple Try RJ Moves": [[7, "implemented-multiple-try-rj-moves"]], "Utility Moves": [[7, "utility-moves"]], "Priors": [[8, "priors"]], "Probability Distribution Container": [[8, "probability-distribution-container"]], "Available Probability Distributions": [[8, "available-probability-distributions"]], "State": [[9, "state"]], "Parallel Tempering": [[10, "parallel-tempering"], [3, "Parallel-Tempering"]], "Utilities": [[11, "utilities"], [3, "Utilities"]], "Periodic Container": [[11, "periodic-container"], [3, "Periodic-Container"]], "TransformContainer": [[11, "transformcontainer"]], "Update functions": [[11, "update-functions"]], "Update Base Class": [[11, "update-base-class"]], "Implemented Update Functions": [[11, "implemented-update-functions"]], "Stopping functions": [[11, "stopping-functions"]], "Stopping Base Class": [[11, "stopping-base-class"]], "Implemented Stopping Functions": [[11, "implemented-stopping-functions"]], "Sampler Model Container": [[11, "sampler-model-container"]], "Other Utility Functions": [[11, "module-eryn.utils.utility"]], "Eryn: a multi-purpose MCMC sampler": [[0, "eryn-a-multi-purpose-mcmc-sampler"], [2, "eryn-a-multi-purpose-mcmc-sampler"]], "Getting Started": [[0, "getting-started"], [2, "getting-started"]], "Prerequisites": [[0, "prerequisites"], [2, "prerequisites"]], "Installing": [[0, "installing"], [2, "installing"]], "Running the Tests": [[0, "running-the-tests"], [2, "running-the-tests"]], "Contributing": [[0, "contributing"], [2, "contributing"]], "Versioning": [[0, "versioning"], [2, "versioning"]], "Citation": [[0, "citation"], [2, "citation"]], "Authors": [[0, "authors"], [2, "authors"]], "Contibutors": [[0, "contibutors"], [2, "contibutors"]], "License": [[0, "license"], [2, "license"]], "Acknowledgments": [[0, "acknowledgments"], [2, "acknowledgments"]], "Welcome to Eryn\u2019s documentation!": [[2, "welcome-to-eryn-s-documentation"]], "Documentation:": [[2, null]], "Tutorial:": [[2, null]], "General Information:": [[2, null]], "Eryn Basic Tutorial": [[3, "Eryn-Basic-Tutorial"]], "MCMC Basics": [[3, "MCMC-Basics"]], "The Tree Metaphor": [[3, "The-Tree-Metaphor"]], "Getting Started with the Ensemble Sampler": [[3, "Getting-Started-with-the-Ensemble-Sampler"]], "Backend Objects": [[3, "Backend-Objects"]], "5-dimensional Arrays": [[3, "5-dimensional-Arrays"]], "State Objects": [[3, "State-Objects"]], "Branches": [[3, "Branches"]], "Add Reversible Jump MCMC (model count uncertainty)": [[3, "Add-Reversible-Jump-MCMC-(model-count-uncertainty)"]], "Add multiple branches": [[3, "Add-multiple-branches"]], "Example diagonal covariance move": [[3, "Example-diagonal-covariance-move"]], "Gibbs Sampling": [[3, "Gibbs-Sampling"]], "Transform Container": [[3, "Transform-Container"]], "Multivariate Prior Distributions": [[3, "Multivariate-Prior-Distributions"]], "Stopping & Update Functions": [[3, "Stopping-&-Update-Functions"]], "More Advanced Eryn Examples": [[4, "More-Advanced-Eryn-Examples"]], "Searching for Gaussian pulses in 2D": [[4, "Searching-for-Gaussian-pulses-in-2D"]], "Choosing the optimal B-Spline order": [[4, "Choosing-the-optimal-B-Spline-order"]]}, "indexentries": {}}) \ No newline at end of file +Search.setIndex({"docnames": ["README", "general/todos", "index", "tutorial/Eryn_tutorial", "tutorial/more_tutorials", "user/backend", "user/ensemble", "user/moves", "user/prior", "user/state", "user/temper", "user/utils"], "filenames": ["README.rst", "general/todos.rst", "index.rst", "tutorial/Eryn_tutorial.ipynb", "tutorial/more_tutorials.ipynb", "user/backend.rst", "user/ensemble.rst", "user/moves.rst", "user/prior.rst", "user/state.rst", "user/temper.rst", "user/utils.rst"], "titles": ["Eryn: a multi-purpose MCMC sampler", "Code Projects", "Welcome to Eryn\u2019s documentation!", "Eryn Basic Tutorial", "More Advanced Eryn Examples", "Backends", "Ensemble", "Moves", "Priors", "State", "Parallel Tempering", "Utilities"], "terms": {"i": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "an": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "advanc": [0, 2, 3, 6], "It": [0, 2, 3, 4, 5, 6, 7, 9, 10], "ha": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "capabl": [0, 2, 3], "parallel": [0, 2, 6, 7], "temper": [0, 1, 2, 5, 6, 7, 9], "multipl": [0, 2, 5, 6, 10, 11], "model": [0, 1, 2, 4, 5, 6, 7, 9, 10], "type": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "unknown": [0, 2, 3], "count": [0, 2, 5, 6, 7, 10], "within": [0, 1, 2, 3, 5, 6, 7, 9, 10, 11], "each": [0, 1, 2, 3, 4, 5, 6, 7, 9, 10, 11], "us": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "revers": [0, 2, 4, 5, 6, 11], "jump": [0, 2, 4, 5, 6], "techniqu": [0, 2, 3, 5, 11], "heavili": [0, 2, 3, 7], "base": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10], "emce": [0, 2, 3, 5, 6, 7, 11], "The": [0, 2, 4, 5, 6, 7, 8, 9, 10, 11], "structur": [0, 2, 3, 7], "ensembl": [0, 2, 4, 5, 7, 9, 11], "state": [0, 2, 4, 5, 6, 7, 10, 11], "object": [0, 1, 2, 5, 6, 7, 8, 9, 10, 11], "propos": [0, 1, 2, 3, 4, 5, 6, 7, 10, 11], "setup": [0, 2, 3, 7], "storag": [0, 2, 3, 5, 6, 9], "backend": [0, 2, 4, 6, 9, 10], "carri": [0, 1, 2, 3, 6, 9, 11], "over": [0, 2, 3, 4, 5, 6, 7, 10, 11], "small": [0, 2, 3, 5, 6], "chang": [0, 2, 3, 4, 6, 7, 11], "account": [0, 2, 3, 11], "increas": [0, 2, 3, 10], "complex": [0, 2, 3, 4], "In": [0, 2, 3, 4, 6, 7, 10, 11], "simpl": [0, 2, 3, 4, 5], "sens": [0, 2, 3], "slightli": [0, 2, 3], "more": [0, 2, 3, 5, 6, 7, 9, 10, 11], "complic": [0, 2, 3, 10], "If": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "you": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "your": [0, 2, 3, 4], "public": [0, 2, 3], "pleas": [0, 2, 3, 6, 9], "cite": [0, 2, 3], "paper": [0, 2, 3, 4, 10], "arxiv": [0, 2, 3, 10, 11], "2303": [0, 2, 3], "02164": [0, 2, 3], "its": [0, 2, 3, 6, 8], "zenodo": [0, 2, 3], "document": [0, 3, 5], "can": [0, 2, 3, 4, 6, 7, 9, 10, 11], "found": [0, 2, 3, 10, 11], "here": [0, 2, 3, 4, 6, 7, 9, 10], "mikekatz04": [0, 2, 3], "github": [0, 2, 3, 10, 11], "io": [0, 2, 3, 11], "find": [0, 2, 3, 7, 10], "code": [0, 2, 3, 10, 11], "com": [0, 2, 3, 10], "below": [0, 2, 3, 4, 6, 10], "quick": [0, 2, 3, 4], "set": [0, 2, 3, 4, 6, 7, 10, 11], "instruct": [0, 2], "pip": [0, 2], "To": [0, 2, 3, 4, 7], "import": [0, 2, 3, 4, 11], "from": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "ensemblesampl": [0, 2, 3, 4, 6, 7, 11], "see": [0, 2, 3, 5, 6, 7, 9, 10, 11], "exampl": [0, 2, 6, 7, 9, 10], "notebook": [0, 2, 6], "info": [0, 2, 5, 6, 7, 8], "also": [0, 2, 3, 4, 5, 7, 9, 10], "navig": [0, 2, 3], "page": [0, 2], "onli": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "few": [0, 2, 3], "python": [0, 2], "depend": [0, 2, 3, 4, 6], "tqdm": [0, 2, 6, 7], "corner": [0, 2, 3], "plot": [0, 1, 2, 3, 4, 5], "numpi": [0, 2, 3, 4, 6, 7, 8, 9, 11], "matplotlib": [0, 2, 3, 4], "ar": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "plan": [0, 2], "develop": [0, 2], "just": [0, 2, 3, 5, 6, 8, 9], "latest": [0, 2], "given": [0, 2, 3, 4, 5, 6, 7, 9, 10], "abov": [0, 2, 3, 4, 6, 7, 10, 11], "otherwis": [0, 2, 5], "clone": [0, 2], "repo": [0, 2], "insid": [0, 2, 8], "directori": [0, 2], "dure": [0, 2, 3, 9, 10, 11], "follow": [0, 2, 3, 6, 10], "main": [0, 2, 3, 6], "m": [0, 2, 3], "unittest": [0, 2], "discov": [0, 2], "packag": [0, 2, 4], "termin": [0, 2], "read": [0, 2, 3, 5, 7], "md": [0, 2], "detail": [0, 1, 2, 3, 5, 7], "our": [0, 2, 3, 4, 9], "conduct": [0, 2], "process": [0, 2, 3], "submit": [0, 2, 7], "pull": [0, 2], "request": [0, 2, 5, 7], "u": [0, 2, 3, 7], "we": [0, 2, 3, 4, 6, 10], "semver": [0, 2], "For": [0, 2, 3, 4, 6, 7, 9, 10], "avail": [0, 2, 3, 5, 6, 7], "tag": [0, 2], "thi": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "repositori": [0, 2], "current": [0, 2, 3, 4, 5, 7, 9], "1": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11], "6": [3, 4], "when": [0, 2, 3, 5, 6, 7, 8, 9, 10], "minimum": [0, 2, 5, 6, 7, 8, 9], "sourc": [0, 2, 3, 6, 7, 8], "articl": [0, 2], "karnesi": [0, 2], "2023ra": [0, 2], "nikolao": [0, 2], "katz": [0, 2], "michael": [0, 2], "l": [0, 2, 3, 4, 7, 11], "korsakova": [0, 2], "natalia": [0, 2], "gair": [0, 2], "jonathan": [0, 2], "r": [0, 2, 4, 5], "stergioula": [0, 2], "titl": [0, 2], "A": [0, 2, 3, 4, 5, 6, 7, 9, 11], "bayesian": [0, 2], "infer": [0, 2, 5, 11], "eprint": [0, 2], "archiveprefix": [0, 2], "primaryclass": [0, 2], "astro": [0, 2], "ph": [0, 2], "im": [0, 2], "month": [0, 2], "3": [0, 2, 3, 4, 6, 7, 11], "year": [0, 2], "2023": [0, 2], "softwar": [0, 2], "michael_katz_2023_7705496": [0, 2], "first": [0, 2, 3, 4, 5, 6, 7, 11], "full": [0, 2, 3, 7, 8, 11], "releas": [0, 2], "mar": [0, 2], "publish": [0, 2], "v1": [0, 2], "0": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "doi": [0, 2], "10": [0, 2, 3, 4], "5281": [0, 2], "7705496": [0, 2], "url": [0, 2], "http": [0, 2, 3, 8, 9, 11], "org": [0, 2, 8, 9, 11], "2013pasp": [0, 2], "125": [0, 2], "306f": [0, 2], "foreman": [0, 2, 7], "mackei": [0, 2, 7], "daniel": [0, 2], "hogg": [0, 2], "david": [0, 2], "w": [0, 2], "lang": [0, 2], "dustin": [0, 2], "goodman": [0, 2, 7], "hammer": [0, 2], "journal": [0, 2, 5, 11], "pasp": [0, 2], "keyword": [0, 2, 3, 5, 6, 7, 11], "astrophys": [0, 2], "instrument": [0, 2], "method": [0, 2, 3, 4, 5, 6, 7, 8, 11], "physic": [0, 2], "comput": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11], "statist": [0, 2, 5, 11], "2013": [0, 2, 7], "volum": [0, 2], "number": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "925": [0, 2], "306": [0, 2], "1086": [0, 2], "670067": [0, 2], "1202": [0, 2], "3665": [0, 2], "adsurl": [0, 2], "ui": [0, 2], "adsab": [0, 2], "harvard": [0, 2], "edu": [0, 2], "ab": [0, 2, 11], "adsnot": [0, 2], "provid": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10], "sao": [0, 2], "nasa": [0, 2], "data": [0, 2, 3, 4, 5, 6], "system": [0, 2], "which": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "mai": [0, 2, 3, 6, 7, 8, 11], "requir": [0, 2, 3, 6, 7], "make": [0, 2, 3, 4, 5, 7, 10, 11], "sure": [0, 2, 3, 7, 11], "do": [0, 2, 3, 4, 6, 7, 8, 11], "properli": [0, 2, 3, 5, 11], "niko": [0, 2, 4], "mayb": [0, 2], "project": [0, 2, 3], "under": [0, 2, 3, 9, 10], "gnu": [0, 2], "file": [0, 2, 5, 6], "wish": [0, 2], "thank": [0, 2, 7], "": [0, 3, 4, 6, 7, 11], "babak": [0, 2], "le": [0, 2], "jeun": [0, 2], "marsat": [0, 2], "t": [0, 2, 3, 4, 5, 6, 7, 10], "littenberg": [0, 2], "n": [0, 2, 4, 5, 6, 7, 11], "cornish": [0, 2], "comment": [0, 2], "veri": [0, 2, 3, 4, 5, 6, 7], "fruit": [0, 2], "discuss": [0, 2, 3], "support": [0, 2, 6, 10], "gr": [0, 2], "prodex": [0, 2], "2019": [0, 2], "fund": [0, 2], "program": [0, 2, 4, 5], "pea": [0, 2], "4000132310": [0, 2], "implement": [1, 2, 3, 6, 9], "product": 1, "space": [1, 3, 4, 5, 6, 9, 10, 11], "mcmc": [1, 4, 5, 6, 7, 9, 11], "direct": [1, 3, 11], "comparison": [1, 5, 11], "suppliment": [1, 3, 7, 9, 10], "log": [1, 3, 4, 5, 6, 7, 8, 9, 10, 11], "likelihood": [1, 3, 4, 5, 6, 7, 9, 10, 11], "perform": [1, 3, 4, 6, 7, 10, 11], "modul": [1, 4], "automat": [1, 6], "produc": [1, 3, 6, 8], "varieti": 1, "imag": 1, "tree": [1, 2], "metaphor": [1, 2], "eryn": [1, 5, 6, 7, 8, 9, 10, 11], "move": [1, 2, 4, 5, 6, 9, 10, 11], "stretchmov": [1, 2, 3, 6, 7], "add": [1, 2, 4, 6, 7, 9], "option": [1, 3, 5, 6, 7, 8, 9, 10, 11], "ptemce": [1, 10, 11], "step": [1, 3, 4, 5, 6, 7, 9, 10, 11], "stone": [1, 5, 11], "integr": [1, 3, 11], "group": [1, 2, 4, 5, 6, 8, 11], "combin": [1, 3, 7, 11], "red": [1, 2], "blue": [1, 2], "where": [1, 3, 4, 5, 6, 7, 10, 11], "stationari": [1, 3, 7], "distribut": [1, 2, 6, 7], "split": [1, 3, 7], "two": [1, 3, 4, 5, 6, 11], "accord": [1, 8, 10, 11], "walker": [1, 3, 4, 5, 6, 7, 9, 10, 11], "Will": 1, "guarante": 1, "balanc": [1, 3, 7], "alwai": [1, 3], "random_st": [2, 5, 6, 9], "prior": [2, 4, 5, 6, 7, 9, 10, 11], "reset": [2, 4, 5, 6, 11], "get_model": [2, 6, 11], "sampl": [2, 4, 5, 6, 7, 8, 10, 11], "run_mcmc": [2, 3, 4, 6], "compute_log_prior": [2, 3, 6], "compute_log_lik": [2, 3, 6], "acceptance_fract": [2, 6, 7], "rj_acceptance_fract": [2, 6], "swap_acceptance_fract": [2, 6], "rj_swap_acceptance_fract": [], "get_chain": [2, 3, 4, 5, 6], "get_blob": [2, 5, 6], "get_log_lik": [2, 3, 5, 6], "get_log_prior": [2, 3, 5, 6], "get_log_posterior": [2, 3, 5, 6, 9], "get_ind": [2, 3, 5, 6], "get_nleav": [2, 3, 5, 6], "get_last_sampl": [2, 3, 5, 6], "get_beta": [2, 5, 6], "get_valu": [2, 4, 5, 6], "get_autocorr_tim": [2, 5, 6], "branches_ind": [2, 3, 6, 7, 9], "branches_coord": [2, 3, 6, 7, 9], "branches_suppliment": [2, 7, 9], "branch_nam": [2, 3, 4, 5, 6, 7, 9, 11], "branch": [2, 4, 5, 6, 7, 9, 10, 11], "nleav": [2, 3, 5, 6, 9], "branchsuppliment": [2, 3, 6, 7, 9, 10], "holder": [2, 7, 9], "add_object": [2, 9], "remove_object": [2, 9], "contained_object": [2, 9], "take_along_axi": [2, 9], "put_along_axi": [2, 9], "flat": [2, 3, 9, 11], "regular": [2, 3], "accept": [2, 3, 5, 6, 7, 10], "beta": [2, 3, 4, 5, 6, 7, 9, 10, 11], "blob": [2, 3, 4, 5, 6, 9, 10], "chain": [2, 3, 4, 5, 6, 10, 11], "dtype": [2, 3, 4, 5], "ind": [2, 3, 4, 5, 6, 7, 9, 10, 11], "initiail": [2, 5], "iter": [2, 3, 5, 6, 7, 10, 11], "log_prior": [2, 3, 5, 9], "log_lik": [2, 3, 4, 5, 9], "move_info": [2, 5], "move_kei": [2, 5], "nbranch": [2, 3, 4, 5, 6], "ndim": [2, 3, 4, 5, 6, 7, 8, 9, 10, 11], "nleaves_max": [2, 3, 4, 5, 6, 7, 9, 11], "nwalker": [2, 3, 4, 5, 6, 7, 9, 10, 11], "ntemp": [2, 3, 4, 5, 6, 7, 9, 10, 11], "reset_arg": [2, 5], "reset_kwarg": [2, 5], "rj": [2, 3, 4, 5], "rj_accept": [2, 5], "store_missing_leav": [2, 5], "reset_bas": [2, 5], "has_blob": [2, 5], "get_autocorr_thin_burn": [2, 5], "get_a_sampl": [2, 3, 5], "get_evidence_estim": [2, 5], "get_gelman_rubin_convergence_diagnost": [2, 5], "shape": [2, 3, 4, 5, 6, 7, 9, 10], "grow": [2, 5], "get_move_info": [2, 5], "save_step": [2, 5], "get_info": [2, 5], "hdf": 2, "hdfbackend": [2, 4, 5, 6], "initi": [2, 3, 4, 5, 6, 9, 10, 11], "open": [2, 5], "swaps_accept": [2, 5], "parent": [2, 3], "class": [2, 3, 4, 5, 6, 8, 9, 10], "note": [2, 3, 6, 7, 9, 11], "num_propos": [2, 7], "gibbs_sampling_setup": [2, 3, 7], "xp": [2, 7, 9, 11], "use_gpu": [2, 7], "gibbs_sampling_setup_iter": [2, 7], "setup_propos": [2, 7], "cleanup_proposals_gibb": [2, 7], "ensure_ord": [2, 7], "fix_logp_gibb": [2, 7], "temperature_control": [2, 6, 7, 11], "compute_log_posterior_bas": [2, 7], "tune": [2, 6, 7, 11], "updat": [2, 4, 6, 7, 9], "metropoli": [2, 3], "hast": [2, 3], "mh": 2, "mhmove": [2, 3, 7], "gaussianmov": [2, 3, 4, 7], "distributiongener": [2, 7], "redbluemov": [2, 3, 7], "groupmov": [2, 3, 7], "groupstretchmov": [2, 3, 7], "reversiblejumpmov": [2, 3, 7], "distributiongeneraterj": [2, 3, 6, 7], "mutlipl": [2, 3], "try": [2, 4, 6], "multipletrymov": [2, 7], "mtdistgenmov": [2, 7], "mtdistgenmoverj": [2, 7], "util": [2, 4, 6, 9], "combinemov": [2, 3, 7], "acceptance_fraction_separ": [2, 7], "period": [2, 6, 7], "probabl": [2, 3, 6, 7, 9, 10], "contain": [2, 4, 5, 6, 7, 9], "probdistcontain": [2, 3, 4, 6, 7, 8], "priors_in": [2, 3, 8], "use_cupi": [2, 8], "logpdf": [2, 3, 6, 7, 8], "ppf": [2, 8], "rv": [2, 3, 4, 7, 8], "uniform_dist": [2, 3, 4, 8], "log_uniform": [2, 8], "mappeduniformdistribut": [2, 8], "temperaturecontrol": [2, 3, 6, 7, 10], "compute_log_posterior_temp": [2, 10], "tempered_likelihood": [2, 10], "temperature_swap": [2, 10], "temper_comp": [2, 10], "make_ladd": [2, 3, 10], "periodiccontain": [2, 3, 7, 11], "distanc": [2, 3, 11], "wrap": [2, 3, 11], "transformcontain": [2, 3], "transform_base_paramet": [2, 3, 11], "fill_valu": [2, 3, 4, 7, 11], "both_transform": [2, 11], "function": [2, 4, 5, 6, 7, 8, 9, 10], "adjuststretchproposalscal": [2, 6, 11], "stop": [2, 6, 10], "searchconvergestop": [2, 3, 11], "other": [2, 3, 4, 5, 6, 7, 9], "groups_from_ind": [2, 3, 11], "get_acf": [2, 11], "get_integrated_act": [2, 11], "thermodynamic_integration_log_evid": [2, 5, 11], "stepping_stone_log_evid": [2, 5, 11], "psrf": [2, 11], "basic": [2, 4, 5, 6], "5": [2, 4, 6, 7, 11], "dimension": [2, 4, 5, 6, 7, 8], "arrai": [2, 4, 5, 6, 7, 8, 9, 10, 11], "uncertainti": 2, "gibb": [2, 7], "transform": [2, 4, 11], "multivari": 2, "search": [2, 3, 7], "gaussian": [2, 3, 7, 10], "puls": [2, 3], "2d": [2, 3, 5, 6, 7, 9, 10], "choos": [2, 3, 10], "optim": 2, "b": [2, 3, 5, 11], "spline": 2, "order": [2, 3, 6, 7, 10, 11], "todo": 2, "pyplot": [3, 4], "plt": [3, 4], "np": [3, 4, 5, 6, 7, 8, 9, 10, 11], "random": [3, 4, 5, 6, 7, 8, 9, 11], "seed": [3, 4, 7], "42": [3, 4], "run": [3, 4, 5, 6, 7, 9], "version": 3, "go": [3, 6, 7], "through": [3, 7, 9], "much": [3, 5, 10], "what": [3, 4], "oper": [3, 10, 11], "illustr": 3, "how": [3, 6, 7], "build": 3, "common": 3, "scale": [3, 7], "up": [3, 4], "understand": [3, 6], "differ": [3, 4, 6, 9, 11], "circumst": 3, "better": 3, "overal": [3, 5, 6, 9], "goal": 3, "assess": [3, 6], "posterior": [3, 4, 5, 6, 7, 9, 10, 11], "paramet": [3, 4, 5, 6, 7, 8, 9, 10, 11], "vec": 3, "theta": [3, 11], "mathcal": 3, "some": [3, 4, 5, 6, 7, 10, 11], "y": [3, 4], "p": [3, 7, 11], "rewrit": 3, "bay": 3, "rule": 3, "frac": [3, 11], "piec": 3, "righthand": 3, "side": [3, 4], "refer": [3, 4, 7, 8, 9], "now": [3, 4, 7, 10], "pi": [3, 4], "surfac": [3, 4], "weight": [3, 6, 7], "write": [3, 5], "chosen": [3, 7, 10], "evid": [3, 5, 11], "numer": [3, 4, 7], "equat": 3, "all": [3, 4, 5, 6, 7, 8, 9, 10, 11], "int_": 3, "_": [3, 4, 7, 8, 9], "d": [3, 4, 11], "z": [3, 11], "draw": [3, 4, 7], "densiti": [3, 4], "explor": [3, 6], "most": [3, 5, 6, 11], "applic": 3, "intract": 3, "ignor": [3, 5, 6, 7], "constant": [3, 4, 10], "factor": [3, 4, 7], "There": 3, "estim": [3, 4, 5, 6, 11], "special": [3, 6, 9, 10], "becaus": [3, 4, 6, 7, 11], "concept": 3, "call": [3, 4, 6, 7, 11], "preferenti": 3, "upward": 3, "probabilist": 3, "downward": 3, "allow": [3, 4, 5, 6, 7, 9, 10], "peak": [3, 4], "rather": [3, 6, 7, 10], "than": [3, 6, 7, 8, 9, 10, 11], "directli": [3, 4, 5, 6, 7, 9], "toward": 3, "highest": 3, "point": [3, 4, 7, 8], "work": [3, 4, 6, 7, 10], "discsuss": 3, "At": 3, "level": [3, 4, 5], "know": 3, "algorithm": [3, 10], "like": [3, 4, 6, 7, 9, 10], "_t": 3, "2": [3, 4, 5, 6, 7, 11], "new": [3, 6, 7, 11], "posit": [3, 4, 6, 7, 9, 11], "probabilti": 3, "alpha": [3, 4], "min": [3, 4, 8], "left": [3, 4, 11], "q": [3, 7], "right": [3, 11], "4": [3, 4, 6], "repeat": [3, 4, 6, 10, 11], "mani": [3, 6, 9], "time": [3, 4, 5, 6, 7, 10, 11], "vice": 3, "versa": 3, "symmetr": [3, 7], "drop": 3, "out": [3, 4, 7], "fraction": [3, 5, 6, 7], "case": [3, 4, 6, 10], "larger": 3, "previou": [3, 4, 5, 6, 11], "wors": 3, "old": [3, 7, 11], "equal": [3, 4], "therefor": [3, 11], "valu": [3, 4, 5, 6, 7, 8, 9, 10, 11], "becom": [3, 6, 10], "compar": 3, "decreas": 3, "befor": [3, 4, 6, 7, 9, 11], "infam": 3, "help": [3, 5, 7, 11], "think": 3, "about": [3, 4], "earli": 3, "creation": 3, "end": [3, 6], "sindarin": 3, "word": [3, 11], "forest": 3, "wood": 3, "purpos": 3, "simplifi": 3, "associ": [3, 5, 6, 7, 8, 9, 10, 11], "everywher": 3, "those": [3, 4, 7], "descript": 3, "quickli": 3, "confus": 3, "bunch": 3, "These": [3, 5, 7, 9, 11], "have": [3, 4, 5, 6, 7, 8, 9, 10, 11], "same": [3, 5, 6, 7, 9, 10], "fix": [3, 4, 7, 11], "throughout": [3, 9], "e": [3, 11], "signal": [3, 4], "sine": 3, "wave": 3, "one": [3, 4, 6, 7, 9, 10], "leaf": [3, 5, 6, 7, 9], "so": [3, 4, 5, 6, 7, 9, 10, 11], "imagin": 3, "leav": [3, 4, 5, 6, 7, 9, 10, 11], "second": [3, 4, 6, 7], "temperatur": [3, 4, 5, 6, 7, 9, 10, 11], "let": [3, 11], "ln": 3, "propto": 3, "x": [3, 4, 8, 10, 11], "mu": [3, 4], "tild": 3, "c": [3, 4, 5, 7, 11], "def": [3, 4], "log_like_fn": [3, 6, 11], "invcov": 3, "diff": [3, 4, 11], "return": [3, 4, 5, 6, 7, 8, 9, 10, 11], "dot": 3, "sum": [3, 4, 8], "dimens": [3, 4, 5, 6, 7, 9, 10, 11], "Then": [3, 9, 11], "gener": [3, 4, 5, 6, 7, 8, 9, 10, 11], "covari": [2, 7], "matrix": [3, 4, 7], "mean": [3, 4, 7, 8, 9, 11], "compon": [3, 4, 6, 9], "100": [3, 4, 7, 10, 11], "zero": [3, 4, 6, 8, 9], "rand": 3, "defin": [3, 4, 10], "cov": [3, 4, 7], "diag": [3, 4], "ones": [3, 4], "linalg": [3, 4], "inv": [3, 4], "next": [3, 10], "simplic": [3, 4], "problem": [3, 4, 7], "hyper": 3, "cube": 3, "center": 3, "length": [3, 5, 6, 7, 11], "lim": 3, "similar": [3, 4, 7, 9], "scipi": [3, 4, 8], "stat": [3, 8], "helper": [3, 7], "aid": 3, "html": [3, 8, 9, 11], "user": [3, 4, 5, 6, 7, 8, 10, 11], "__": 3, "take": [3, 4, 5, 6, 7, 8, 9], "dictionari": [3, 5, 6, 7, 8, 9, 10, 11], "input": [3, 4, 5, 6, 7, 8, 9, 10, 11], "simplest": [3, 6], "form": [3, 6, 7, 11], "kei": [3, 4, 5, 6, 7, 8, 9, 10, 11], "integ": [3, 6], "repres": [3, 7], "index": [3, 5, 6, 7, 8, 9, 10, 11], "wrapper": [3, 11], "uniform": [3, 4, 8], "enter": [3, 7], "3d": [3, 5, 9], "would": [3, 6, 7, 10], "look": [3, 4, 10], "limit": [3, 4], "rang": [3, 4, 7, 8], "realli": [3, 5, 11], "ani": [3, 4, 5, 6, 7], "focu": 3, "deal": 3, "output": [3, 5, 6, 8, 9, 10, 11], "fun": 3, "stuff": 3, "everyth": [3, 4, 6], "argument": [3, 5, 6, 7, 10, 11], "arg": [3, 4, 6, 7], "kwarg": [3, 5, 6, 7, 8, 11], "invers": [3, 5, 6, 7, 10, 11], "extra": [3, 5, 6], "evalu": [3, 4, 5, 6, 10], "coord": [3, 4, 6, 7, 9], "size": [3, 4, 5, 7, 8, 11], "check": [3, 4, 5, 6, 11], "asarrai": 3, "print": [3, 4, 5, 11], "30": [3, 4, 11], "69858605": 3, "27": [3, 4], "88613553": 3, "22294092": 3, "14": [3, 4], "70569247": 3, "18": [3, 4], "96300942": 3, "40": 3, "24777582": 3, "73441074": 3, "24": 3, "83741982": 3, "29": [3, 4], "01040764": 3, "8427905": 3, "15": [3, 4], "6395355": 3, "37": 3, "63324244": 3, "32945619": 3, "23": [3, 4], "65755241": 3, "71578138": 3, "17": [3, 4], "41587351": 3, "60372232": 3, "78508305": 3, "16": [3, 4], "44610878": 3, "65807937": 3, "96569731": 3, "21": [3, 4], "07245692": 3, "71012131": 3, "11": [3, 4], "7938995": 3, "26": [3, 4], "68678623": 3, "56139796": 3, "07206293": 3, "22766639": 3, "70138195": 3, "66486977": 3, "12": [3, 4], "67496753": 3, "03289018": 3, "46929288": 3, "72131899": 3, "44": 3, "24698912": 3, "3584848": 3, "19": [3, 4], "77366496": 3, "28": [3, 4], "72150734": 3, "84518648": 3, "33": [3, 4], "37118884": 3, "36": 3, "15731891": 3, "25": [3, 4, 10], "26041351": 3, "57594664": 3, "25802303": 3, "22": [3, 4, 11], "37039294": 3, "31": [3, 4], "88982593": 3, "35309536": 3, "45627855": 3, "46651653": 3, "11210745": 3, "31311317": 3, "36123373": 3, "67409531": 3, "41272599": 3, "34": [3, 4], "51272062": 3, "13": [3, 4], "40386882": 3, "6083427": 3, "3819265": 3, "56151466": 3, "79275524": 3, "09464227": 3, "63670509": 3, "88594767": 3, "5583328": 3, "38": 3, "33786195": 3, "04251137": 3, "92432228": 3, "5383962": 3, "02898281": 3, "39747766": 3, "93610511": 3, "43": 3, "67631032": 3, "6288042": 3, "57863213": 3, "43201382": 3, "71339587": 3, "98065915": 3, "34629761": 3, "53454745": 3, "20": [3, 4], "72808992": 3, "58751379": 3, "39368888": 3, "15662608": 3, "32": [3, 4], "82365756": 3, "8": [3, 4], "14075088": 3, "22668818": 3, "43301692": 3, "79050623": 3, "10278803": 3, "10581548": 3, "66327643": 3, "96839538": 3, "91765459": 3, "73450427": 3, "25399003": 3, "51642261": 3, "99636574": 3, "3527218": 3, "90758502": 3, "35": [3, 4], "26045709": 3, "51292546": 3, "unit": [3, 5, 6], "cover": 3, "must": [3, 5, 6, 7, 8, 9, 10, 11], "inclus": 3, "burn": [3, 4, 5, 6, 10], "certain": 3, "progress": [3, 4, 6, 7], "true": [3, 4, 5, 6, 7, 8, 9, 10, 11], "show": [3, 4, 6, 7], "thin_bi": [3, 4, 6, 11], "thin": [3, 4, 5, 6], "total": [3, 4, 6, 11], "nstep": [3, 4, 5, 6], "store": [3, 5, 6, 7, 9, 11], "7": [0, 2, 3, 4, 5, 11], "500": [3, 4], "1000": [3, 4], "00": [3, 4], "lt": [3, 4], "280": [], "45it": [], "2500": 3, "08": 3, "305": [], "75it": [], "inform": [3, 4, 5, 6, 7, 9, 10, 11], "default": [3, 4, 5, 6, 7, 8, 9, 10, 11], "retriev": [3, 6], "omdel": 3, "name": [3, 4, 5, 6, 7, 9, 10, 11], "per": [3, 4, 5, 6, 7, 9, 10], "intimid": 3, "assign": [3, 6, 7], "model_0": [3, 5], "model_n": [3, 5], "reshap": [3, 4], "truth": [3, 4], "9": [3, 4], "fig": [3, 4], "ax": [3, 4], "subplot": [3, 4], "set_size_inch": 3, "walk": 3, "commonli": 3, "cours": 3, "specif": [3, 5, 6, 7, 9], "last": [3, 4, 5, 6, 7, 11], "rais": [3, 5, 6, 7, 8, 9, 10, 11], "either": [3, 6], "equival": [3, 6, 9], "properti": [3, 5, 6, 7, 9], "tupl": [3, 5, 6, 7, 8, 9, 10, 11], "includ": [3, 5, 6, 7, 8, 10], "outer": 3, "notic": 3, "quantiti": [3, 4, 7, 9], "singl": [3, 6, 11], "g": [3, 11], "ll": [3, 7], "lp": [3, 7], "f": [3, 4, 6], "05297225": 3, "81695595": 3, "80839791": 3, "30449907": 3, "65001331": 3, "72492908": 3, "51878996": 3, "89787788": 3, "49356178": 3, "65518146": 3, "7436319": 3, "66068016": 3, "03059694": 3, "49585829": 3, "90577462": 3, "04656098": 3, "0396035": 3, "80658449": 3, "73887276": 3, "27535667": 3, "36789573": 3, "19099689": 3, "72232295": 3, "43958501": 3, "44427868": 3, "05581352": 3, "30749439": 3, "85688564": 3, "11343788": 3, "24766066": 3, "6654815": 3, "28154314": 3, "00102494": 3, "6139005": 3, "08899932": 3, "1398411": 3, "clariti": 3, "evolut": 3, "maximum": [3, 4, 5, 6, 7, 8, 10, 11], "describ": [3, 4, 6, 7, 8], "ensebl": 3, "39": [3, 4], "dict": [3, 4, 5, 6, 7, 8, 9, 10, 11], "gt": [3, 4], "dict_kei": 3, "thei": [3, 4, 6, 7, 8, 9], "examin": 3, "coordin": [3, 4, 6, 7, 9, 10, 11], "addit": [3, 7], "pass": [3, 5, 6, 7, 9, 11], "explain": [3, 6], "anoth": [3, 6, 7, 9], "wai": [3, 4, 6], "That": 3, "howev": 3, "wa": [3, 5, 7, 9, 10], "runtim": 3, "last_stat": 3, "access": [3, 5, 6, 9, 11], "ask": 3, "give": [3, 7, 9], "moment": 3, "41852808": 3, "87391204": 3, "05035603": 3, "47197889": 3, "04722716": 3, "8519063": 3, "53028792": 3, "47895075": 3, "91435392": 3, "67615627": 3, "59494035": 3, "09579563": 3, "31956089": 3, "61486196": 3, "12447462": 3, "1692713": 3, "54813706": 3, "47761491": 3, "81600973": 3, "57141612": 3, "18369399": 3, "03114163": 3, "03929851": 3, "37835437": 3, "41370852": 3, "04192051": 3, "24060107": 3, "81791365": 3, "43145056": 3, "01976309": 3, "08419629": 3, "29498179": 3, "08090042": 3, "03457142": 3, "97839311": 3, "45783438": 3, "54860516": 3, "39096809": 3, "63453914": 3, "05034555": 3, "13275529": 3, "13057916": 3, "21847262": 3, "14804885": 3, "15556008": 3, "92686111": 3, "99795709": 3, "35164059": 3, "21098077": 3, "21647944": 3, "15304968": 3, "4313149": 3, "70693915": 3, "4318716": 3, "84488379": 3, "02338003": 3, "07328961": 3, "98861309": 3, "0448529": 3, "76536477": 3, "86707428": 3, "24040534": 3, "52161672": 3, "93361207": 3, "10290796": 3, "69669336": 3, "98189704": 3, "90223547": 3, "3408396": 3, "12094704": 3, "14709346": 3, "37990706": 3, "48720061": 3, "15361028": 3, "1595534": 3, "80055637": 3, "59197714": 3, "34129599": 3, "36805722": 3, "01708067": 3, "58699943": 3, "32689704": 3, "58811303": 3, "7197202": 3, "05348442": 3, "2112424": 3, "3357544": 3, "65449106": 3, "68322549": 3, "04792421": 3, "13391508": 3, "31811812": 3, "46163754": 3, "10129065": 3, "178406967597018": 3, "794468601537229": 3, "51395040804473": 3, "931453545910662": 3, "386837504796224": 3, "563281497846829": 3, "984904356428126": 3, "560152628566094": 3, "364831763416989": 3, "043213387296886": 3, "991876210506318": 3, "427279383435607": 3, "18908173602542": 3, "107865819910735": 3, "608721090901623": 3, "832486351401688": 3, "12778742254714": 3, "637400087040206": 3, "682196761468905": 3, "061062522948745": 3, "99054037739138": 3, "328935193719195": 3, "084341581952058": 3, "696619458753926": 3, "544067098137223": 3, "552223973129747": 3, "89127983919111": 3, "926633980338917": 3, "55484597643607": 3, "753526531972273": 3, "330839113958634": 3, "944376020031633": 3, "532688554298963": 3, "597121756200298": 3, "807907257937872": 3, "593825884034455": 3, "547496880273862": 3, "491318574369066": 3, "970759842526956": 3, "061530625801362": 3, "903893550359193": 3, "147464607768942": 3, "563271019780707": 3, "64568075132453": 3, "643504626290895": 3, "731398085093454": 3, "660974318785833": 3, "668485545961143": 3, "439786571171963": 3, "510882553516781": 3, "864566059032157": 3, "72390623089636": 3, "729404901485783": 3, "665975147003136": 3, "94424036264724": 3, "219864618156716": 3, "944797066539389": 3, "357809250310932": 3, "536305491515654": 3, "586215078293383": 3, "501538559296131": 3, "557778368205309": 3, "278290231060463": 3, "37999974857351": 3, "753330808148338": 3, "034542185913606": 3, "44653753837222": 3, "61583342786152": 3, "209618824491073": 3, "494822509135583": 3, "415160934688622": 3, "8537650614948": 3, "633872503903893": 3, "66001892478048": 3, "892832526613594": 3, "000126072062562": 3, "666535740104562": 3, "672478860022272": 3, "313481837705911": 3, "104902607647315": 3, "854221450723335": 3, "880982689335216": 3, "530006134397748": 3, "099924895847023": 3, "839822509144446": 3, "101038497292365": 3, "232645664310798": 3, "566409885481924": 3, "724167865929159": 3, "848679866185286": 3, "167416523641707": 3, "196150950789018": 3, "560849676395932": 3, "646840543492647": 3, "831043581839076": 3, "974563002223718": 3, "614216117226597": 3, "126825968142406": 3, "601924782141412": 3, "65276656606936": 3, "shown": [3, 6], "down": [3, 7, 10], "individu": [3, 5, 6, 7, 8, 9], "model_nam": 3, "With": [3, 4, 6], "thing": [3, 4], "later": 3, "want": [3, 4, 5, 6, 7, 9, 10], "0x7fe51cbb3940": [], "78336101": 3, "50304083": 3, "16554043": 3, "38717246": 3, "53567929": 3, "67992539": 3, "45789611": 3, "71044046": 3, "99561671": 3, "18785587": 3, "58942687": 3, "98468048": 3, "23409897": 3, "34754982": 3, "5749637": 3, "51043746": 3, "46761376": 3, "36652826": 3, "13575554": 3, "58616381": 3, "56687718": 3, "71412812": 3, "07272873": 3, "90290266": 3, "9749437": 3, "26148892": 3, "32754323": 3, "05336273": 3, "43505825": 3, "23267062": 3, "11388586": 3, "97965383": 3, "18803374": 3, "55536628": 3, "50140833": 3, "97231495": 3, "80168105": 3, "87750463": 3, "55941876": 3, "9055604": 3, "93206222": 3, "61099548": 3, "22893838": 3, "06397951": 3, "53085973": 3, "78123828": 3, "29397075": 3, "87720694": 3, "51235873": 3, "87712242": 3, "0915609": 3, "06094217": 3, "39300579": 3, "27838045": 3, "6473782": 3, "6848448": 3, "37394608": 3, "43214013": 3, "80375073": 3, "62217316": 3, "78087387": 3, "37379556": 3, "70695828": 3, "98429392": 3, "46919589": 3, "87912662": 3, "80736483": 3, "84535279": 3, "02691072": 3, "61697279": 3, "59413254": 3, "14139239": 3, "70216385": 3, "56814835": 3, "23763059": 3, "8783785": 3, "93419666": 3, "25561706": 3, "41370698": 3, "03998814": 3, "43668379": 3, "39311608": 3, "07642243": 3, "43586086": 3, "97223065": 3, "00745957": 3, "21236731": 3, "23184676": 3, "8907263": 3, "16475211": 3, "7308126": 3, "62439654": 3, "69996634": 3, "52028448": 3, "43853217": 3, "30865891": 3, "92696939": 3, "98209765": 3, "4834703": 3, "30722477": 3, "07144626": 3, "56432505": 3, "29089771": 3, "32751881": 3, "1210728": 3, "25274812": 3, "9270326": 3, "58971747": 3, "75561133": 3, "33792123": 3, "05336995": 3, "51405245": 3, "06533858": 3, "93630816": 3, "40238616": 3, "10136621": 3, "01709496": 3, "08910818": 3, "52223649": 3, "2454308": 3, "86197169": 3, "73127788": 3, "07000261": 3, "29443113": 3, "40651963": 3, "81087754": 3, "31763714": 3, "12761906": 3, "55144102": 3, "21964748": 3, "72082232": 3, "66783269": 3, "61110439": 3, "05759876": 3, "18926752": 3, "31039828": 3, "84006455": 3, "7555078": 3, "88418758": 3, "82023276": 3, "15032279": 3, "28216431": 3, "19945317": 3, "9670416": 3, "37643346": 3, "20656978": 3, "09247869": 3, "83026592": 3, "29333812": 3, "54354725": 3, "0506733": 3, "58235446": 3, "0591977": 3, "01318246": 3, "08567564": 3, "00402466": 3, "09280401": 3, "57272931": 3, "10612996": 3, "56686201": 3, "63470563": 3, "29598879": 3, "03616789": 3, "20713821": 3, "3009565": 3, "69564655": 3, "26928194": 3, "15389273": 3, "12383051": 3, "51493035": 3, "79119556": 3, "69120098": 3, "01019032": 3, "21449347": 3, "19529285": 3, "39078543": 3, "32386668": 3, "4771604": 3, "02665296": 3, "27157202": 3, "66344411": 3, "40855699": 3, "2227286": 3, "03021349": 3, "12585205": 3, "0358304": 3, "67413575": 3, "6791267": 3, "17160254": 3, "00517803": 3, "66454531": 3, "44931894": 3, "2731242": 3, "80140622": 3, "09520302": 3, "08417592": 3, "2045363": 3, "81677496": 3, "60685038": 3, "11358217": 3, "41939285": 3, "56655054": 3, "45246425": 3, "12320174": 3, "25527187": 3, "02585738": 3, "4670955": 3, "71912218": 3, "7720434": 3, "05341122": 3, "29611737": 3, "1748023": 3, "4372776": 3, "68897449": 3, "3131327": 3, "24317085": 3, "05633037": 3, "50847769": 3, "16816417": 3, "76160903": 3, "43456796": 3, "81744538": 3, "64783055": 3, "33848598": 3, "09218265": 3, "19003503": 3, "0901105": 3, "68079509": 3, "42874181": 3, "48445254": 3, "09533596": 3, "1585624": 3, "28324105": 3, "41256148": 3, "93230171": 3, "30259333": 3, "2291636": 3, "14969874": 3, "02255485": 3, "58419916": 3, "4221966": 3, "85477946": 3, "25227351": 3, "96312104": 3, "39770535": 3, "0401763": 3, "6414978": 3, "55821906": 3, "14829119": 3, "47269454": 3, "10152982": 3, "38256367": 3, "08807142": 3, "43429676": 3, "59181726": 3, "05120369": 3, "77512143": 3, "14463123": 3, "23983033": 3, "67143671": 3, "50082842": 3, "30584941": 3, "20683388": 3, "03483413": 3, "20720856": 3, "08598898": 3, "22080208": 3, "64865562": 3, "40682697": 3, "70122139": 3, "64175924": 3, "58143259": 3, "89952925": 3, "54536517": 3, "86749033": 3, "06019685": 3, "04449809": 3, "47050671": 3, "04282887": 3, "24454869": 3, "32891118": 3, "38437228": 3, "71091403": 3, "65667314": 3, "11566271": 3, "52706537": 3, "56474267": 3, "76715602": 3, "42312996": 3, "76080056": 3, "67036294": 3, "28564342": 3, "21110799": 3, "14839688": 3, "05283774": 3, "05478405": 3, "08082125": 3, "1447414": 3, "98462828": 3, "42112513": 3, "21974939": 3, "10592271": 3, "67658838": 3, "49570422": 3, "45793154": 3, "02752867": 3, "5590723": 3, "54126603": 3, "48664511": 3, "43764875": 3, "66773172": 3, "82481843": 3, "15349943": 3, "88049842": 3, "28931849": 3, "31243376": 3, "3452211": 3, "40682334": 3, "18493076": 3, "04839187": 3, "50253895": 3, "19130782": 3, "11088476": 3, "56778619": 3, "36271421": 3, "5242914": 3, "99162198": 3, "9547818": 3, "25692932": 3, "89856378": 3, "15281554": 3, "77735714": 3, "11311344": 3, "01051167": 3, "02134045": 3, "06119311": 3, "17510522": 3, "52670296": 3, "42278451": 3, "60418234": 3, "24963427": 3, "1611201": 3, "10664802": 3, "70071643": 3, "51691024": 3, "89998806": 3, "3590725": 3, "0173904": 3, "94144735": 3, "37182924": 3, "37866043": 3, "28597385": 3, "24976022": 3, "42612563": 3, "82950074": 3, "72487348": 3, "00682858": 3, "25268318": 3, "29240179": 3, "68332019": 3, "05155055": 3, "9316834": 3, "34874628": 3, "4050601": 3, "47131539": 3, "68665177": 3, "32277562": 3, "62515034": 3, "04049481": 3, "59094657": 3, "29061988": 3, "28060227": 3, "45655932": 3, "60961052": 3, "12862806": 3, "0491748": 3, "19942752": 3, "27318093": 3, "79095823": 3, "06471564": 3, "32490203": 3, "01371249": 3, "69586741": 3, "07780255": 3, "08082376": 3, "902882": 3, "40395368": 3, "57161503": 3, "6188732": 3, "79434534": 3, "33174975": 3, "08962046": 3, "40607314": 3, "28465644": 3, "0654673": 3, "99906271": 3, "14535375": 3, "31550719": 3, "49069006": 3, "73052807": 3, "31724964": 3, "01639082": 3, "97773904": 3, "77949826": 3, "90806883": 3, "60840415": 3, "35765918": 3, "09470711": 3, "24921034": 3, "98871092": 3, "15249127": 3, "04587488": 3, "68114623": 3, "44485005": 3, "97479187": 3, "41527236": 3, "18904736": 3, "55784624": 3, "77663656": 3, "06626997": 3, "69748913": 3, "91203846": 3, "65645409": 3, "67068651": 3, "56675987": 3, "13570414": 3, "561949": 3, "00650889": 3, "20041901": 3, "01172908": 3, "006941": 3, "27228794": 3, "85989137": 3, "46663793": 3, "96448725": 3, "49410352": 3, "02103752": 3, "89929408": 3, "99124781": 3, "28788692": 3, "21738227": 3, "20578794": 3, "62613854": 3, "54711243": 3, "45468127": 3, "35998576": 3, "23620079": 3, "19631993": 3, "81886101": 3, "23891811": 3, "32009865": 3, "99200186": 3, "58326714": 3, "2244503": 3, "61884746": 3, "30593953": 3, "54655862": 3, "54046119": 3, "45128582": 3, "63043325": 3, "92726937": 3, "10223362": 3, "89663029": 3, "12669414": 3, "63684452": 3, "74616171": 3, "41006412": 3, "4589307": 3, "09501266": 3, "15033712": 3, "21188577": 3, "69703418": 3, "09822929": 3, "27225746": 3, "57391104": 3, "3775653": 3, "3247288": 3, "12052205": 3, "0951038": 3, "32710163": 3, "55808909": 3, "61767066": 3, "28774531": 3, "08037741": 3, "42380889": 3, "05488234": 3, "12340336": 3, "8862303": 3, "52472562": 3, "9497435": 3, "35200129": 3, "36531645": 3, "22484955": 3, "08386021": 3, "83386291": 3, "83839054": 3, "67436706": 3, "56586041": 3, "24858485": 3, "2514738": 3, "ad": [3, 5, 6, 7, 11], "straight": 3, "forward": 3, "effect": [3, 7, 10, 11], "stretch": [3, 7], "desir": [3, 7], "tempering_kwarg": [3, 4, 6], "control": [3, 4, 6, 7, 10, 11], "hood": 3, "thr": 3, "onc": [3, 4, 7, 10], "again": [3, 4, 7], "could": [3, 4, 5], "doe": [3, 9, 10], "actual": [3, 4, 7], "attach": [3, 6], "expon": 3, "pi_": 3, "rightarrow": 3, "probe": 3, "target": 3, "infti": 3, "between": [3, 4, 5, 6, 7, 8, 10, 11], "gradual": 3, "flatten": [3, 4, 9], "infinit": [3, 6], "multimod": 3, "improv": 3, "mix": [3, 6], "creat": [3, 6], "swap": [3, 5, 6, 7, 10], "rung": [3, 5], "ladder": [3, 4, 5, 10], "after": [3, 6, 7, 10, 11], "until": [3, 10], "reach": [3, 4, 10], "lowest": 3, "ensur": [3, 6, 7, 8], "higher": 3, "cold": 3, "alpha_t": 3, "l_": 3, "beta_1": 3, "beta_2": 3, "t_1": 3, "t_2": 3, "lower": [3, 4], "reflect": 3, "fill": [3, 6, 7, 9, 10, 11], "ensemble_pt": 3, "75": 3, "39it": [], "73": [], "56it": 3, "0x7fe518eeb640": [], "action": 3, "temp": [3, 4], "across": [3, 4, 5, 6, 9], "label": [3, 4], "warm": 3, "legend": [3, 4], "0x7fe4eeb56020": [], "abil": [3, 11], "variabl": [3, 4, 6, 11], "nest": [3, 7], "review": 3, "alpha_": 3, "text": [3, 4], "k": [3, 4], "cancel": 3, "denomin": [3, 6, 7], "_k": 3, "usual": [3, 5, 6, 7, 10], "reduc": [3, 4], "1d": [3, 5, 6, 9, 10], "inject": [3, 4], "determin": [3, 4, 5, 7, 10], "well": [3, 4, 10], "gaussian_puls": 3, "f_x": 3, "exp": [3, 4, 7], "combine_gaussian": 3, "param": [3, 4, 11], "templat": [3, 4], "zeros_lik": 3, "log_like_fn_gauss_puls": 3, "sigma": [3, 4], "axi": [3, 4, 7, 9, 11], "nleaves_min": [3, 4, 6, 7], "gauss": 3, "stream": [3, 6], "num": [3, 4, 6], "linspac": [3, 4], "gauss_inj_param": [3, 4], "nois": [3, 4], "randn": [3, 4], "len": [3, 4, 7, 8, 9], "color": [3, 4], "lightskyblu": 3, "crimson": [3, 4], "0x7fe5065d3a00": [], "seen": 3, "need": [3, 4, 6, 7, 9, 10, 11], "boolean": [3, 5, 7], "indic": [3, 5, 6, 7, 9, 10, 11], "being": [3, 6, 7, 9], "while": [3, 4, 9], "assum": [3, 4, 7, 11], "knowledg": 3, "everi": [3, 5, 6, 7, 11], "spread": [3, 4], "both": [3, 5, 9], "term": [3, 4, 7], "four": [3, 6], "put": [3, 9], "phase": 3, "verifi": [3, 10], "calcul": [3, 4, 5, 6, 7, 8, 11], "sig1": [3, 4], "0001": [3, 4], "correct": [3, 4, 7, 11], "nn": [3, 4], "unus": [3, 9], "continu": 3, "multivariate_norm": [3, 4], "proper": [3, 5, 6, 7, 9, 10], "bool": [3, 4, 5, 6, 7, 8, 9, 10, 11], "turn": [3, 7], "fals": [3, 4, 5, 6, 7, 8, 9, 11], "binari": [3, 7], "independ": [3, 7], "amplitud": [3, 4, 10], "max": [3, 4, 8], "01": [3, 4], "rj_move": [3, 4, 6], "stock": 3, "priorgenrj": 3, "00001": 3, "built": [3, 6, 8], "exist": 3, "entir": [3, 6], "avoid": [3, 4, 7], "redo": 3, "logp": [3, 6, 7, 10], "line": 3, "grab": 3, "behind": [3, 9], "reason": 3, "close": [3, 4], "due": 3, "267": 3, "48857258": 3, "273": 3, "13358068": 3, "272": 3, "04356318": 3, "41959181": 3, "269": 3, "65159976": 3, "45581292": 3, "0534354": 3, "21480317": 3, "270": 3, "17335397": 3, "268": 3, "79114293": 3, "97593006": 3, "76118281": 3, "97477874": 3, "96915067": 3, "44497304": 3, "55232307": 3, "69079155": 3, "13611008": 3, "266": 3, "317588": 3, "19035794": 3, "89498107": 3, "271": 3, "07519263": 3, "01364247": 3, "87074404": 3, "04982746": 3, "10216287": 3, "47561552": 3, "73825004": 3, "55984235": 3, "59669384": 3, "1644275": 3, "17686823": 3, "5530668": 3, "38471516": 3, "13810357": 3, "4965744": 3, "16336376": 3, "37273575": 3, "78843561": 3, "07926996": 3, "65635127": 3, "4524668": 3, "58696913": 3, "88671242": 3, "37498437": 3, "44936502": 3, "4546787": 3, "25432486": 3, "746439": 3, "53395912": 3, "78432036": 3, "09641939": 3, "51993913": 3, "03690593": 3, "47293353": 3, "13166208": 3, "3654575": 3, "4533991": 3, "76589766": 3, "67119754": 3, "70301053": 3, "05419472": 3, "85429247": 3, "34706671": 3, "61170665": 3, "35744037": 3, "49130951": 3, "41191836": 3, "275": 3, "34555909": 3, "63796847": 3, "91668611": 3, "75395295": 3, "265": 3, "89682062": 3, "78621765": 3, "99614319": 3, "0744601": 3, "66910539": 3, "02551726": 3, "96820568": 3, "10089077": 3, "36015159": 3, "91718124": 3, "58033431": 3, "98339743": 3, "82208208": 3, "73487149": 3, "30751278": 3, "16895186": 3, "30161": 3, "80287899": 3, "03261838": 3, "48740534": 3, "6325905": 3, "60035469": 3, "2688322": 3, "274": 3, "62821662": 3, "26778016": 3, "04032577": 3, "28884496": 3, "45920218": 3, "25519775": 3, "62892664": 3, "26285005": 3, "00766373": 3, "57983127": 3, "27398717": 3, "46784025": 3, "09344272": 3, "24621424": 3, "80982016": 3, "18463057": 3, "36312445": 3, "59373649": 3, "557759": 3, "87911261": 3, "02454376": 3, "93381068": 3, "278": 3, "98378996": 3, "83416176": 3, "05726244": 3, "02005355": 3, "09999743": 3, "06119558": 3, "00971489": 3, "12141711": 3, "14986569": 3, "14312728": 3, "72178265": 3, "78486633": 3, "33369975": 3, "45148378": 3, "87881376": 3, "72205688": 3, "82850441": 3, "57604611": 3, "79122124": 3, "35162949": 3, "59266883": 3, "114322": 3, "56048742": 3, "67914435": 3, "02251242": 3, "32624169": 3, "16921554": 3, "73743926": 3, "21583965": 3, "74454528": 3, "21673563": 3, "68519371": 3, "60927311": 3, "20377505": 3, "99209023": 3, "13139001": 3, "27709924": 3, "67000643": 3, "6973296": 3, "6495672": 3, "3549933": 3, "01571009": 3, "5950623": 3, "66516293": 3, "2000": [3, 4], "last_sampl": [3, 11], "26it": [], "57": [], "78it": 3, "bn": [3, 4], "arang": [3, 4], "pretti": 3, "bin": [3, 4], "sharex": 3, "ax_t": 3, "enumer": 3, "hist": [3, 4], "261": 3, "2302411532098": 3, "remov": [3, 4, 6, 7, 9, 11], "were": [3, 5, 6, 7], "anywher": 3, "nan": [3, 4, 5, 6, 9], "belong": [3, 6], "isnan": [3, 4], "axvlin": [3, 4], "sin": 3, "combine_sin": 3, "log_like_fn_gauss_and_sin": 3, "params_both": 3, "params_gauss": 3, "params_sin": 3, "none": [3, 4, 5, 6, 7, 8, 9, 10, 11], "sine_inj_param": 3, "0x7fe4f40ce320": [], "matric": 3, "One": [3, 4], "keep": [3, 4, 5, 6], "229": 3, "18441391": 3, "233": 3, "51872418": 3, "231": 3, "94801463": 3, "235": 3, "4050852": 3, "226": 3, "670966": 3, "232": 3, "71483467": 3, "99148863": 3, "40535129": 3, "22825659": 3, "230": 3, "16495346": 3, "228": 3, "29127145": 3, "74374649": 3, "49117628": 3, "25563257": 3, "862688": 3, "227": 3, "44352935": 3, "234": 3, "67849744": 3, "49859258": 3, "65579296": 3, "81069992": 3, "81377327": 3, "13945878": 3, "41654888": 3, "94783414": 3, "31522738": 3, "81615798": 3, "78817956": 3, "80534798": 3, "90524192": 3, "65212536": 3, "79128554": 3, "40049869": 3, "24527916": 3, "05736224": 3, "238": 3, "63570222": 3, "43650992": 3, "70464801": 3, "34328242": 3, "12956141": 3, "26914673": 3, "26442866": 3, "47503056": 3, "56851138": 3, "37430551": 3, "93271986": 3, "38850202": 3, "53092761": 3, "03556521": 3, "54049548": 3, "99913862": 3, "53777598": 3, "16530309": 3, "35808751": 3, "22674918": 3, "15827365": 3, "236": 3, "00134375": 3, "68397539": 3, "24369726": 3, "68966882": 3, "59454795": 3, "95358162": 3, "82307944": 3, "14353803": 3, "14890501": 3, "15227879": 3, "64013278": 3, "89132475": 3, "37202006": 3, "71900568": 3, "70720334": 3, "98768038": 3, "11278035": 3, "33877408": 3, "241": 3, "12287975": 3, "40874977": 3, "84468334": 3, "2095918": 3, "99834849": 3, "10304391": 3, "32449253": 3, "1865482": 3, "04713397": 3, "82592779": 3, "51721312": 3, "95258359": 3, "80694449": 3, "14420069": 3, "90414617": 3, "609932": 3, "10522529": 3, "85522437": 3, "68349989": 3, "10665679": 3, "19997595": 3, "44616622": 3, "85330281": 3, "27875953": 3, "58673313": 3, "10932674": 3, "29296705": 3, "95788218": 3, "0866977": 3, "30264265": 3, "82346604": 3, "72494204": 3, "28165905": 3, "15989341": 3, "29506362": 3, "50970622": 3, "71630602": 3, "12739788": 3, "63811447": 3, "83828594": 3, "67742849": 3, "6620161": 3, "63551634": 3, "32572285": 3, "24280784": 3, "38914285": 3, "14806505": 3, "23356207": 3, "67103428": 3, "237": 3, "90881138": 3, "83466125": 3, "34757217": 3, "55405955": 3, "77788649": 3, "20798465": 3, "09701881": 3, "44980698": 3, "98678903": 3, "26528224": 3, "38754856": 3, "85794747": 3, "22487614": 3, "95102489": 3, "95030022": 3, "22226315": 3, "56264544": 3, "59721156": 3, "90934207": 3, "26628503": 3, "59759858": 3, "18117692": 3, "3581854": 3, "89490619": 3, "35931607": 3, "58448115": 3, "42531875": 3, "79614919": 3, "43853536": 3, "59733154": 3, "00377491": 3, "39675954": 3, "79924613": 3, "68628461": 3, "18445055": 3, "21994604": 3, "56782994": 3, "51977065": 3, "89946916": 3, "0x7fe51c85be20": [], "0x7fe51c858970": [], "5000": 3, "46": [3, 4], "64it": [], "03": [3, 4], "67it": [], "nleaves_gauss": 3, "nleaves_sin": 3, "histtyp": [3, 4], "218": 3, "81128464457336": [], "0x7fe51c85b1c0": [], "41": 3, "three": 3, "tier": 3, "origin": [3, 7, 10], "inherit": [3, 7], "custom": [3, 9], "recommend": [3, 11], "variou": [3, 11], "guidanc": 3, "guid": 3, "hous": 3, "appli": [3, 5, 6, 9], "univers": 3, "execut": 3, "Their": 3, "simultan": [3, 7, 9], "without": [3, 8], "half": 3, "strategi": 3, "instead": [3, 6], "ideal": [3, 10], "infrequ": 3, "adjust": [3, 5, 7, 10], "implem": 3, "distil": 3, "rest": [3, 7], "apparatu": 3, "featur": [3, 10], "handl": [3, 4, 6, 7], "effici": [3, 11], "ineffici": 3, "sub": [3, 7], "consecut": [3, 11], "str": [3, 5, 6, 7, 9], "list": [3, 4, 5, 6, 7, 8, 9, 10], "complet": [3, 7, 9], "customiz": [3, 7], "separ": [3, 6, 7], "string": [3, 4, 5, 6, 7, 9, 10], "entri": [3, 6, 7, 11], "possibl": [3, 6, 7], "loop": [3, 4, 7], "final": [3, 7, 11], "multimodel": 3, "okai": 3, "still": [3, 9], "uncertain": 3, "sake": 3, "togeth": [3, 6], "happen": [3, 10], "alreadi": [3, 4], "gibbs_sampling_gauss": 3, "gauss_mov": 3, "gibbs_sampling_sin": 3, "j": [3, 4], "els": [3, 4, 10], "sine_mov": 3, "live_danger": [3, 7], "80it": [], "02": [3, 4], "07": 4, "91it": [], "bit": [3, 4], "usag": [3, 11], "primari": [3, 7], "incom": [3, 7], "likeihood": 3, "done": [3, 4, 6], "lambda": [3, 4], "transform1": 3, "parameter_transform": [3, 11], "fill_dict": [3, 11], "ndim_ful": [3, 11], "fill_ind": [3, 4, 11], "tc": 3, "copi": [3, 4, 9, 11], "transpos": [3, 4, 11], "return_transpos": [3, 11], "08632139e": 3, "60690240e": 3, "63677136e": 3, "58243638e": 3, "80742172e": 3, "48770106e": 3, "02414318e": 3, "89070565e": 3, "86317944e": 3, "01564690e": 3, "49361582e": 3, "56981225e": 3, "94908920e": 3, "00253015e": 3, "23719336e": 3, "87255692e": 3, "37599338e": 3, "58987515e": 3, "79614705e": 3, "08905403e": 3, "22267309e": 3, "51960831e": 3, "23844069e": 3, "12780791e": 3, "37857796e": 3, "84607425e": 3, "84959593e": 3, "08592238e": 3, "16380935e": 3, "08854514e": 3, "30413168e": 3, "31256326e": 3, "34037374e": 3, "05454840e": 3, "62439129e": 3, "84600597e": 3, "24216204e": 3, "06322747e": 3, "75257330e": 3, "74410851e": 3, "45103260e": 3, "66617563e": 3, "48807142e": 3, "56103307e": 3, "11942710e": 3, "44459923e": 3, "25724889e": 3, "33740431e": 3, "17776377e": 3, "82212428e": 3, "49504813e": 3, "95427799e": 3, "14969458e": 3, "49931778e": 3, "89265702e": 3, "07244991e": 3, "59844209e": 3, "26106580e": 3, "55348884e": 3, "11968757e": 3, "68043826e": 3, "77305089e": 3, "66041776e": 3, "76826266e": 3, "13514357e": 3, "38412535e": 3, "42595049e": 3, "56575620e": 3, "41786990e": 3, "45874529e": 3, "59544048e": 3, "07643756e": 3, "52261347e": 3, "85639886e": 3, "39958883e": 3, "60259798e": 3, "66728050e": 3, "24611324e": 3, "58938201e": 3, "44091817e": 3, "96698636e": 3, "20763907e": 3, "94697741e": 3, "86247016e": 3, "62115825e": 3, "27619947e": 3, "09242661e": 3, "93964027e": 3, "24119921e": 3, "74513725e": 3, "10515031e": 3, "64960010e": 3, "52019359e": 3, "12740824e": 3, "01697213e": 3, "75147057e": 3, "09947418e": 3, "47948976e": 3, "69171203e": 3, "29903074e": 3, "53327624e": 3, "35885257e": 3, "32717307e": 3, "35665810e": 3, "34783920e": 3, "33242669e": 3, "70990891e": 3, "79490240e": 3, "79389285e": 3, "26540813e": 3, "54783570e": 3, "47058272e": 3, "28099189e": 3, "01873553e": 3, "12558722e": 3, "83776685e": 3, "91206004e": 3, "97988870e": 3, "17266233e": 3, "35938756e": 3, "lnprob": 3, "x1": [3, 4, 6], "group1": [3, 4, 6], "x2": [3, 4], "group2": [3, 4], "transform_contain": 3, "x_i": 3, "zip": [3, 4], "parameter_transforms1": 3, "parameter_transforms2": 3, "fill_dict1": 3, "fill_dict2": 3, "via": [3, 6], "02075611e": 3, "02727006e": 3, "00000000e": [3, 4], "13876888e": 3, "21750379e": 3, "63032269e": 3, "41364936e": 3, "82839215e": 3, "82998951e": 3, "53754004e": 3, "41882314e": 3, "59755871e": 3, "92949537e": 3, "08356812e": 3, "08432157e": 3, "46321356e": 3, "31341683e": 3, "40498524e": 3, "76316883e": 3, "33995872e": 3, "86607916e": 3, "57888534e": 3, "25180693e": 3, "62038136e": 3, "84363621e": 3, "09868405e": 3, "22000724e": 3, "87755596e": 3, "80796598e": 3, "63922890e": 3, "51618456e": 3, "98930985e": 3, "67700223e": 3, "52682127e": 3, "08536016e": 3, "31094294e": 3, "49908409e": 3, "51746200e": 3, "67337853e": 3, "39781914e": 3, "36167947e": 3, "65103017e": 3, "06673412e": 3, "27410329e": 3, "36771859e": 3, "11948520e": 3, "96697065e": 3, "87492837e": 3, "15992865e": 3, "06106851e": 3, "71165012e": 3, "31258185e": 3, "27268892e": 3, "22800190e": 3, "36001607e": 3, "44901909e": 3, "99355743e": 3, "75798659e": 3, "12911347e": 3, "25605562e": 3, "52691391e": 3, "70568429e": 3, "14485121e": 3, "27961647e": 3, "23105790e": 3, "96911344e": 3, "91366683e": 3, "20239492e": 3, "89449059e": 3, "55766542e": 3, "35588882e": 3, "56631090e": 3, "53459398e": 3, "01526637e": 3, "47101948e": 3, "60993882e": 3, "32430001e": 3, "15162482e": 3, "48120893e": 3, "01301454e": 3, "56145377e": 3, "80942539e": 3, "10765086e": 3, "55909099e": 3, "57522429e": 3, "04203362e": 3, "08070163e": 3, "98213105e": 3, "39454748e": 3, "19214547e": 3, "40650911e": 3, "16413152e": 3, "35632698e": 3, "63025658e": 3, "37687786e": 3, "02628232e": 3, "51501868e": 3, "72271287e": 3, "82068959e": 3, "21476682e": 3, "24122456e": 3, "18553959e": 3, "01434754e": 3, "38874332e": 3, "64379851e": 3, "11499059e": 3, "37829927e": 3, "00684311e": 3, "81023241e": 3, "46053035e": 3, "42042825e": 3, "75255769e": 3, "06469854e": 3, "69261136e": 3, "30689283e": 3, "81367142e": 3, "63242623e": 3, "93730454e": 3, "03084230e": 3, "07013775e": 3, "13635829e": 3, "21678060e": 3, "00032214e": 3, "89371770e": 3, "59844069e": 3, "39985157e": 3, "95887822e": 3, "02129869e": 3, "22223650e": 3, "92677176e": 3, "99364556e": 3, "88707487e": 3, "22902035e": 3, "52464049e": 3, "49669920e": 3, "50811847e": 3, "22855575e": 3, "78545112e": 3, "01431916e": 3, "06786939e": 3, "21074325e": 3, "02628236e": 3, "21973235e": 3, "43413861e": 3, "44449384e": 3, "71803485e": 3, "51851733e": 3, "46613915e": 3, "62531485e": 3, "77474391e": 3, "27060011e": 3, "06155817e": 3, "66806329e": 3, "91302812e": 3, "62315982e": 3, "57017190e": 3, "90671062e": 3, "76540850e": 3, "73521470e": 3, "03881446e": 3, "80200744e": 3, "01449722e": 3, "88268694e": 3, "14821162e": 3, "35715060e": 3, "34472211e": 3, "59493525e": 3, "35923672e": 3, "72485827e": 3, "81193853e": 3, "66683516e": 3, "22249706e": 3, "81045587e": 3, "83590629e": 3, "80074269e": 3, "30521327e": 3, "50867019e": 3, "85469474e": 3, "31847040e": 3, "05376264e": 3, "87792366e": 3, "94922165e": 3, "09566965e": 3, "19092082e": 3, "34696638e": 3, "08195111e": 3, "41405587e": 3, "99578765e": 3, "91657567e": 3, "25636709e": 3, "83607342e": 3, "33607709e": 3, "18750844e": 3, "60778216e": 3, "73751571e": 3, "08492502e": 3, "80209792e": 3, "66468666e": 3, "11461587e": 3, "54591363e": 3, "42276044e": 3, "15088121e": 3, "63183959e": 3, "17278909e": 3, "66244840e": 3, "34436394e": 3, "87594207e": 3, "85351652e": 3, "07228765e": 3, "38321860e": 3, "24509662e": 3, "30999341e": 3, "01378376e": 3, "28474753e": 3, "76497701e": 3, "46788632e": 3, "93483431e": 3, "72443113e": 3, "94829755e": 3, "90424481e": 3, "26806506e": 3, "30778859e": 3, "39320004e": 3, "17337329e": 3, "16975520e": 3, "71584940e": 3, "13700788e": 3, "14224688e": 3, "44053671e": 3, "57785197e": 3, "44352584e": 3, "08684450e": 3, "69255661e": 3, "21332377e": 3, "06559176e": 3, "67692851e": 3, "91841518e": 3, "62891052e": 3, "90707385e": 3, "85404272e": 3, "11760201e": 3, "52200640e": 3, "49409538e": 3, "37689084e": 3, "27441272e": 3, "44706362e": 3, "92012298e": 3, "78031465e": 3, "60929867e": 3, "39059657e": 3, "20317506e": 3, "77252523e": 3, "83156146e": 3, "84346745e": 3, "43270561e": 3, "31445281e": 3, "49834221e": 3, "50797949e": 3, "48447339e": 3, "16676244e": 3, "82139808e": 3, "26300647e": 3, "21061236e": 3, "00085086e": 3, "34126062e": 3, "23811796e": 3, "82912989e": 3, "08120073e": 3, "01083356e": 3, "74011782e": 3, "46993361e": 3, "01741438e": 3, "64481168e": 3, "53678102e": 3, "68002040e": 3, "47414565e": 3, "97502336e": 3, "33866045e": 3, "67242783e": 3, "86238145e": 3, "30605397e": 3, "dist": 3, "45": 3, "prior_val": 3, "boundari": [3, 6], "condit": [3, 6], "item": [3, 4, 6, 7], "frequenc": [3, 4], "offset": 3, "params_before_1": 3, "params_before_2": 3, "should": [3, 4, 5, 6, 7, 9, 10], "params_after_1": 3, "1405977954259794": 3, "282539820143316": 3, "declar": [3, 6], "them": [3, 6, 7, 9, 11], "__call__": [3, 11], "signatur": [3, 6], "part": [3, 11], "anyth": [3, 7, 9], "interv": 3, "update_iter": [3, 4, 6], "ton": [3, 4], "converg": [3, 5, 11], "criterion": [3, 6], "47": 3, "48": 3, "50": [3, 4, 11], "n_iter": [3, 11], "verbos": [3, 4, 7, 11], "stopping_fn": [3, 6], "stopping_iter": [3, 6], "3766": 3, "31678229": 3, "2278": 3, "39604335": 3, "4059": 3, "02192642": 3, "2144": 3, "19798244": 3, "998": 3, "28824411": 3, "1428": 3, "11763617": 3, "1849": 3, "86261277": 3, "395": 3, "82800654": 3, "3538": 3, "16264136": 3, "2386": 3, "93883948": 3, "2649": 3, "90937541": 3, "1946": 3, "19356638": 3, "2282": 3, "89975813": 3, "1547": 3, "48615372": 3, "1204": 3, "51547451": 3, "649": 3, "74890771": 3, "3215": 3, "08254415": 3, "1425": 3, "56101932": 3, "2921": 3, "47148738": 3, "1583": 3, "96524582": 3, "1384": 3, "47935102": 3, "1485": 3, "917688": 3, "1522": 3, "66935955": 3, "1244": 3, "37480478": 3, "1501": [3, 10], "36183826": 3, "2138": 3, "88955728": 3, "713": 3, "31326984": 3, "1724": 3, "38252192": 3, "967": 3, "74170929": 3, "616": 3, "752707": 3, "1944": 3, "30173589": 3, "1440": 3, "93342643": 3, "1298": 3, "02439483": 3, "1686": 3, "88049192": 3, "1388": 3, "22694244": 3, "89": 3, "51421123": 3, "1286": 3, "28705614": 3, "1377": 3, "81556495": 3, "1310": 3, "65173531": 3, "2833": 3, "47977965": 3, "3491": 3, "52561205": 3, "641": 3, "48222829": 3, "1573": 3, "34755124": 3, "1381": 3, "71501128": 3, "2655": 3, "19429871": 3, "1335": 3, "47251394": 3, "3695": 3, "80574539": 3, "1375": 3, "33229211": 3, "2972": 3, "09945822": 3, "1740": 3, "7113659": 3, "1313": 3, "41740737": 3, "545": 3, "05618362": 3, "1271": 3, "52780167": 3, "3677": 3, "68425215": 3, "1458": 3, "42786266": 3, "621": 3, "36007203": 3, "94778516": 3, "862": 3, "26458892": 3, "3376": 3, "97052939": 3, "2738": 3, "30382482": 3, "2396": 3, "04714838": 3, "3847": 3, "0369564": 3, "2467": 3, "72846803": 3, "2601": 3, "9956732": 3, "2930": 3, "49147807": 3, "2987": 3, "61151173": 3, "3122": 3, "68430004": 3, "2749": 3, "51246169": 3, "723": 3, "57849073": 3, "1469": 3, "36411184": 3, "1917": 3, "57389757": 3, "1197": 3, "33797897": 3, "1442": 3, "27625541": 3, "2245": 3, "68914219": 3, "1338": 3, "98687076": 3, "1862": 3, "77573979": 3, "2189": 3, "02815502": 3, "1591": 3, "92946993": 3, "1359": 3, "46554231": 3, "3003": 3, "49085676": 3, "1796": 3, "38296258": 3, "2975": 3, "3466723": 3, "3485": 3, "79013489": 3, "2857": 3, "09434732": 3, "2081": 3, "60939944": 3, "2558": 3, "43513486": 3, "2254": 3, "20797938": 3, "3483": 3, "18026064": 3, "3652": 3, "11045454": 3, "3119": 3, "6491669": 3, "2595": 3, "00784266": 3, "854": 3, "86242004": 3, "2141": 3, "24458421": 3, "1239": 3, "27101919": 3, "2207": 3, "80400398": 3, "1115": 3, "71944662": 3, "1845": 3, "7570246": 3, "3039": 3, "2483924": 3, "875": 3, "96968329": 3, "1025": 3, "23204354": 3, "02585093": 3, "313": [], "06it": [], "61": 4, "301": [], "09it": [], "best": [3, 4, 11], "06567225433396463": 3, "150": 3, "300": 6, "60it": [], "nicer": 4, "mpl": 4, "rcparam": 4, "linewidth": 4, "font": 4, "famili": 4, "serif": 4, "fontsiz": 4, "mathtext": 4, "fontset": 4, "stix": 4, "usetex": 4, "chainconsum": 4, "interpol": 4, "noisi": 4, "figur": 4, "attempt": [4, 6], "nubmer": 4, "synthet": 4, "lowlim": 4, "low": [4, 7, 10], "highlim": 4, "high": [4, 10], "npuls": 4, "dx": 4, "get": [4, 5, 6, 7, 8, 9], "discrit": 4, "mgrid": 4, "grid": 4, "amp": 4, "edg": 4, "border": 4, "inj_coordin": 4, "gather": [4, 8], "aa": 4, "xy": 4, "87454012": 4, "67064809": 4, "51855763": 4, "45071431": 4, "31908225": 4, "60257423": 4, "23199394": 4, "09080052": 4, "06552784": 4, "09865848": 4, "13212411": 4, "39610291": 4, "65601864": 4, "0888797": 4, "34033376": 4, "65599452": 4, "78964632": 4, "76809823": 4, "55808361": 4, "32568562": 4, "13821051": 4, "36617615": 4, "70288025": 4, "56281538": 4, "10111501": 4, "80521949": 4, "22775101": 4, "20807258": 4, "4786331": 4, "2567934": 4, "remind": 4, "sigma_det": 4, "det": 4, "sigma_inv": 4, "norm": 4, "sqrt": 4, "gaussian_flat": 4, "po": 4, "empti": [4, 5], "einsum": 4, "vector": [4, 6, 7], "fac": 4, "kl": 4, "breakpoint": 4, "expand_dim": 4, "log_prob_fn": 4, "gauss_out": 4, "num_group": 4, "int": [4, 5, 6, 7, 8, 9, 10, 11], "inds1": 4, "given_sign": 4, "squeez": 4, "sig": 4, "atleast_2d": 4, "llh": 4, "sigma_nois": 4, "nosi": 4, "varianc": [4, 5, 11], "cm": 4, "figsiz": 4, "121": 4, "cf": 4, "contourf": 4, "cmap": 4, "pubu": 4, "scatter": 4, "marker": 4, "dc143c": 4, "colorbar": 4, "xlabel": 4, "ylabel": 4, "122": 4, "configur": [4, 6], "manner": 4, "did": 4, "simpler": 4, "dynam": 4, "don": [4, 6], "000001": 4, "nleaf": 4, "0000001": 4, "kk": 4, "randint": 4, "inds_temp": 4, "inds_fix": 4, "ind1": 4, "ind2": 4, "coords_in": 4, "groups_in": 4, "log_prob": 4, "remain": [4, 7], "begin": 4, "might": 4, "burnin": 4, "result": [4, 5, 6, 9], "ight": 4, "minut": 4, "ndim_max": 4, "provide_group": [4, 6], "plot_iter": [4, 6], "01it": 4, "41it": [3, 4], "0x7ff61a97edc0": 4, "get_clean_chain": 4, "extract": 4, "nanind": 4, "logical_not": 4, "samples_in": 4, "init": 4, "givenparam": 4, "discard": [4, 5, 6], "pulse_paramet": 4, "noise_paramet": 4, "sigma_": 4, "mathrm": 4, "samples_puls": 4, "samples_nois": 4, "add_chain": 4, "6495ed": 4, "bar_shad": 4, "tick_font_s": 4, "label_font_s": 4, "max_tick": 4, "ii": 4, "add_mark": 4, "marker_styl": 4, "marker_s": 4, "plotter": 4, "warn": [4, 6], "been": [4, 5, 6, 7, 11], "good": 4, "load": [4, 6], "analysi": 4, "constrain": 4, "orang": 4, "get_clean_k_chain": 4, "k_chain": 4, "gauss_k_chain_baselin": 4, "lw": 4, "hatch": 4, "linestyl": 4, "xtick": 4, "ytick": 4, "xlim": 4, "section": 4, "fit": [4, 6], "spectrum": 4, "agnost": 4, "motiv": 4, "free": 4, "knot": 4, "situat": 4, "spectral": 4, "lot": 4, "window": [4, 11], "importantli": 4, "psd": 4, "invorm": 4, "lpsd": 4, "measur": 4, "durat": 4, "cadenc": 4, "sampler": [4, 5, 6, 7, 9, 10], "tob": 4, "1e6": 4, "dt": 4, "delta": 4, "ndata": 4, "tvec": 4, "df": 4, "simul": [4, 5, 11], "seri": [4, 11], "domain": 4, "start": [4, 11], "theoret": 4, "requenc": 4, "nfft": 4, "fvec": 4, "smooth": 4, "fstar": 4, "8e": 4, "n1": 4, "n2": 4, "noisemodel": 4, "1e": [4, 6], "hte": 4, "sn": 4, "var": 4, "folder": 4, "yz": 4, "xf637mpx56g2dvdv9d8v1fnm0000gn": 4, "ipykernel_3250": 4, "1282363938": 4, "py": [4, 11], "runtimewarn": 4, "divid": 4, "encount": 4, "true_divid": 4, "power": 4, "conveni": 4, "gentimeseriesfrompsd": 4, "welchpsd": 4, "ifft": 4, "ing": 4, "welch": 4, "nav": 4, "tndata": 4, "format": 4, "my_data": 4, "f20": 4, "s20": 4, "win": 4, "nuttall4c": 4, "fr1": 4, "s1": 4, "1000000": 4, "100000": 4, "06": 4, "save": [4, 5, 9], "computat": 4, "averag": [4, 7, 11], "frequeni": 4, "pre": 4, "tcheck": 4, "f0": 4, "f1": 4, "5e": 4, "fl": 4, "sl": 4, "sle": 4, "kav": 4, "kde": 4, "jde": 4, "200": 4, "flim": 4, "nuttall4b": 4, "winalpha": 4, "olap": 4, "errryp": 4, "std": 4, "doplot": 4, "err": 4, "absolut": 4, "loglog": 4, "grei": 4, "cornflowerblu": 4, "errorbar": 4, "yerr": 4, "fmt": 4, "logpsd": 4, "my": 4, "ylim": 4, "1e2": 4, "hz": 4, "loc": 4, "0x7ff62dd829d0": 4, "maxmodel": 4, "backendnam": 4, "a_test": 4, "investig": 4, "concern": 4, "respect": [4, 6, 7, 11], "simpli": 4, "restrict": 4, "band": 4, "i_band": 4, "mx": 4, "mn": 4, "2400506683151953": 4, "7418475507541406": 4, "easier": [4, 11], "futur": 4, "fr": 4, "dim": 4, "dd": 4, "edges_starting_param": 4, "indx": 4, "hadl": 4, "splinelikelihood": 4, "__init__": [3, 4, 8], "self": [3, 4, 5, 7, 8, 9, 10, 11], "freq": 4, "inf": [4, 6, 7, 8, 10, 11], "1e14": 4, "expmax": 4, "kind": 4, "cubic": 4, "ftol": 4, "periodogram": 4, "ndarrai": [3, 4, 5, 6, 7, 8, 9, 10, 11], "nf": 4, "float": [4, 7, 10, 11], "diverg": 4, "exponenti": 4, "infin": 4, "toler": 4, "proxim": 4, "logspac": 4, "_nseg": 4, "_n": 4, "logfr": 4, "discret": 4, "fourier": 4, "normal": [3, 4, 11], "get_noise_psd_model": 4, "psd_model": 4, "interp1d": 4, "consid": [4, 6, 9], "intern": [4, 6], "internal_knots_paramet": 4, "control_points_edg": 4, "control_point": 4, "log_psd_model": 4, "v": 4, "knots_i": 4, "control_points_i": 4, "inds2": 4, "control_points_edges_i": 4, "knots_list": 4, "control_pt": 4, "interp_model": 4, "bounds_error": 4, "extrapol": 4, "assume_sort": 4, "prevent": [4, 6], "overflow": 4, "i_ov": 4, "normalis": 4, "log2pi": 4, "nan_to_num": 4, "isfinit": 4, "instanti": 4, "psdlike": 4, "real": 4, "05": 4, "liekev": 4, "29905751e": 4, "37617254e": 4, "30751294e": 4, "31923024e": 4, "31360092e": 4, "32508567e": 4, "45639724e": 4, "46121449e": 4, "h5": [4, 5], "finish": 4, "184": 4, "53": 4, "85it": 4, "1577252010": 4, "111": 4, "114": 4, "invalid": [4, 7], "subtract": 4, "anaconda3": 4, "lib": 4, "python3": 4, "site": 4, "core": 4, "fromnumer": 4, "86": 4, "ufunc": 4, "obj": [4, 7, 11], "passkwarg": 4, "612": 4, "51": 4, "11it": 4, "multipli": [4, 5, 6], "52": 4, "54it": 4, "911": 4, "08it": 4, "baseline_run_backend": 4, "disk": 4, "ndim_knot": 4, "ndim_edg": 4, "samples_knot": 4, "samples_edg": 4, "paramnam": 4, "f_": 4, "s_": 4, "plot_hist": 4, "ff": 4, "ax_list": 4, "becasu": 4, "chaincnsum": 4, "annoyinh": 4, "knots_k_chain": 4, "annoi": 4, "prob": 4, "rect": 4, "facecolor": 4, "edgecolor": 4, "upper": 4, "sim": 4, "fin": 4, "memori": [5, 6, 7], "doubl": [5, 6, 7, 8, 9], "float64": 5, "latter": 5, "track": [5, 6], "nblob": [5, 6, 9], "4d": [5, 9], "5d": 5, "locat": 5, "relev": 5, "clear": 5, "maxim": [5, 6], "pair": [5, 6], "attribut": [5, 6, 7, 11], "slice_v": [5, 6], "streamlin": 5, "slice": [5, 6, 9], "non": [5, 6, 11], "hdf5": [5, 6], "particularli": [5, 6], "larg": [5, 6, 7, 11], "subset": [5, 6, 7], "autocorrel": [5, 6, 11], "correl": 5, "among": 5, "legnth": 5, "attributeerror": 5, "recent": [5, 6], "all_temp": [5, 6], "multiply_thin": [5, 6], "minumum": [5, 6], "autocorr": [5, 6], "integrated_tim": [5, 6], "return_error": 5, "therodynam": 5, "ss_kwarg": 5, "error": [5, 7, 11], "thermodynam": [5, 11], "receiv": 5, "logz": [5, 11], "dlogz": [5, 11], "doprint": 5, "psrf_kwarg": 5, "gelman": [5, 11], "rubin": [5, 11], "diagnost": [5, 11], "approach": [5, 11], "monitor": [5, 11], "deviat": [5, 7, 11], "rhat": [5, 11], "uniti": [5, 11], "brook": [5, 11], "sp": [5, 11], "1998": [5, 11], "graphic": [5, 11], "434": [5, 11], "455": [5, 11], "db": [5, 11], "1992": [5, 11], "sequenc": [5, 6, 11], "scienc": [5, 11], "457": [5, 11], "511": [5, 11], "nsampl": 5, "trace": [5, 11], "flag": [5, 11], "screen": 5, "tabl": 5, "rhat_all_branch": 5, "ngrow": 5, "expand": 5, "moves_accepted_fract": 5, "whether": [5, 6, 7], "filenam": 5, "read_onli": 5, "compress": 5, "compression_opt": 5, "h5py": 5, "instal": 5, "throw": 5, "runtimeerror": [5, 7], "mode": [5, 7], "far": 5, "driver": 6, "provide_suppliment": 6, "pool": [6, 11], "dr_move": 6, "dr_max_it": [6, 7], "blobs_dtyp": 6, "plot_gener": 6, "plot_nam": 6, "update_fn": 6, "fill_zero_leaves_v": 6, "num_repeats_in_model": 6, "num_repeats_rj": 6, "track_mov": 6, "global": 6, "relat": [6, 8, 9, 10], "callabl": 6, "natur": 6, "logarithm": 6, "jimp": 6, "sent": 6, "x0": 6, "xn": 6, "xi": 6, "regard": 6, "group0": 6, "groupn": 6, "groupi": 6, "uniqu": [6, 10], "wil": 6, "params0": 6, "params1": 6, "params2": 6, "params3": 6, "groupsi": 6, "tutori": [6, 7, 9], "all_models_togeth": 6, "supp": [6, 10], "branch_supp": [6, 10], "model_": 6, "test": [6, 11], "map": [6, 8, 11], "randomli": [6, 7], "select": [6, 7, 10], "ot": 6, "delai": 6, "reject": 6, "birth": 6, "switch": [6, 7], "off": 6, "Not": 6, "yet": 6, "subclass": [6, 7], "serial": 6, "By": [6, 7, 9, 11], "written": 6, "medium": 6, "expect": 6, "treat": 6, "prefer": 6, "rate": 6, "specifi": [6, 10, 11], "criteria": 6, "met": 6, "contribut": 6, "1e300": 6, "analyz": 6, "interrupt": 6, "catch": 6, "reprent": 6, "own": 6, "valueerror": [6, 7, 8, 9, 10, 11], "startup": 6, "issu": [6, 7, 9], "practic": 6, "get_stat": 6, "mtrand": 6, "randomst": 6, "fail": [6, 7, 11], "silent": 6, "necessari": [3, 6, 7], "outsid": [6, 8, 10], "initial_st": 6, "skip_initial_state_check": 6, "yield": [6, 7], "greater": [6, 8, 10, 11], "made": [6, 7, 10], "fact": 6, "bar": [6, 11], "notabl": 6, "suitabl": 6, "jupyt": 6, "fulli": 6, "skip": [6, 7], "improp": [6, 10], "post_burn_upd": 6, "sinc": [6, 10], "never": 6, "evalut": 6, "correspond": [6, 11], "prevent_swap": 7, "skip_supp_names_upd": 7, "is_rj": 7, "random_se": 7, "share": 7, "hold": [7, 8], "amount": 7, "cupi": [7, 8, 9, 11], "incorrect": [7, 8, 9], "all_branch_nam": 7, "branch_names_run": 7, "inds_run": 7, "concurr": 7, "at_least_one_propos": 7, "least": 7, "new_ind": 7, "new_branch_supp": 7, "back": [7, 9], "correct_key_ord": 7, "logl": [7, 10, 11], "mesh": 7, "place": [7, 10], "old_stat": 7, "new_stat": 7, "mask": 7, "concret": 7, "get_propos": [3, 7], "standard": 7, "compat": 7, "notimplementederror": 7, "curent": 7, "carrier": 7, "cov_al": [3, 7], "scalar": 7, "isotrop": 7, "align": 7, "sequenti": 7, "uniformli": 7, "inconsist": 7, "generate_dist": 7, "nsplit": 7, "randomize_split": 7, "abc": [7, 11], "abstract": 7, "et": 7, "al": 7, "complementari": 7, "won": 7, "shuffl": 7, "smaller": 7, "twice": 7, "stuck": 7, "subspac": 7, "suppress": 7, "goe": 7, "dstndstn": 7, "wonder": 7, "terminologi": 7, "classmethod": [7, 11], "complement": 7, "gibbs_ndim": 7, "compliment": 7, "whose": 7, "return_gpu": 7, "affin": 7, "invari": 7, "wear": 7, "2010": 7, "redredbluemov": 7, "adjust_factor": 7, "ndims_old": 7, "ndims_new": 7, "broadcast": [7, 9], "choose_c_v": 7, "nc": 7, "random_number_gener": 7, "modular": 7, "get_new_point": 7, "c_temp": 7, "branch_shap": 7, "branch_i": 7, "mew": 7, "s_all": 7, "c_all": 7, "nfriend": 7, "n_iter_upd": 7, "complimentari": 7, "maintain": [7, 10], "friend": 7, "deafault": 7, "find_friend": 7, "s_ind": 7, "present": 7, "setup_friend": 7, "s_inds_al": 7, "math": [7, 11], "dr": 7, "fix_chang": 7, "nut": 7, "all_coord": 7, "all_ind": 7, "nleaves_min_al": 7, "nleaves_max_al": 7, "mark": 7, "ount": 7, "all_cord": 7, "flip": 7, "third": 7, "get_model_change_propos": 7, "reves": 7, "num_tri": 7, "tri": 7, "overwritten": 7, "mtdistgenrj": 7, "special_like_func": 7, "generated_coord": 7, "inds_leaves_rj": 7, "overwrit": 7, "args_lik": 7, "kwargs_lik": 7, "special_prior_func": 7, "args_prior": 7, "kwargs_prior": 7, "special_generate_func": 7, "fill_tupl": 7, "args_gener": 7, "auxillari": 7, "kwargs_gener": 7, "special_generate_logpdf": 7, "get_mt_log_posterior": 7, "readout_adjust": 7, "out_val": 7, "all_vals_prop": 7, "aux_all_v": 7, "elsewher": 7, "logp_out": 7, "ll_out": 7, "lp_out": 7, "log_proposal_pdf_out": 7, "log_sum_weight": 7, "log_proposal_pdf": 7, "aux_logp": 7, "aux_ll": 7, "aux_lp": 7, "aux_log_proposal_pdf": 7, "aux_log_sum_weight": 7, "get_mt_propos": 7, "ll_in": 7, "lp_in": 7, "inds_reverse_rj": 7, "come": [7, 11], "pretend": 7, "set_coords_and_ind": 7, "multipletrymoverj": 7, "throught": 7, "debug": 7, "arrang": 8, "miss": 8, "exactli": 8, "match": [8, 9], "even": 8, "care": [8, 10, 11], "lai": 8, "uniformdistribut": 8, "doc": [8, 9, 10], "loguniform": 8, "modifi": 8, "pdf": 8, "around": [9, 11], "branch_suppliment": 9, "metadata": 9, "lnpostfn": 9, "too": 9, "former": 9, "obhect": 9, "kept": 9, "wrong": 9, "less": 9, "obj_info": 9, "base_shap": 9, "dim2_extra": 9, "dim1_extra": 9, "beyond": 9, "whatev": 9, "delet": 9, "skip_nam": 9, "along": [9, 11], "stabl": 9, "arr": 9, "against": 9, "values_in": 9, "maint": 9, "effective_ndim": 10, "tmax": 10, "adapt": 10, "adaptation_lag": 10, "10000": 10, "adaptation_tim": 10, "stop_adapt": 10, "permut": 10, "skip_swap_supp_nam": 10, "act": 10, "basi": 10, "determ": 10, "lag": 10, "05823": 10, "adapation_tim": 10, "adap": 10, "assertionerror": 10, "incorrectli": 10, "mundan": 10, "except": 10, "re": 10, "singular": 10, "demand": 10, "attent": 10, "domin": 10, "wander": 10, "caus": 10, "discontinu": 10, "neighbor": 10, "cascad": 10, "perfrom": 10, "round": 10, "equiv": [10, 11], "geometr": 10, "safe": 10, "bet": 10, "long": 10, "willvousden": 10, "neither": 10, "nor": 10, "insuffici": 10, "ratio": 10, "periodic_in": 11, "p1": 11, "p2": 11, "base_transform": 11, "affect": 11, "oject": 11, "target_accept": 11, "supression_factor": 11, "max_chang": 11, "start_iter": 11, "maximunm": 11, "iters_consecut": 11, "past_like_best": 11, "compute_log_like_fn": 11, "compute_log_prior_fn": 11, "map_fn": 11, "member": 11, "convert": 11, "fast": 11, "fft": 11, "multidimension": 11, "largest": 11, "sokal": 11, "origind": 11, "quadratur": 11, "finit": 11, "un": 11, "thermodyman": 11, "langl": 11, "rangle_": 11, "int_0": 11, "approxim": 11, "block_len": 11, "1810": 11, "04488": 11, "pubm": 11, "ncbi": 11, "nlm": 11, "nih": 11, "gov": 11, "21187451": 11, "block": 11, "per_walk": 11, "separatelli": 11, "neff": 11, "od": 11, "taken": 11, "joergdietrich": 11, "diagon": 2, "277": 3, "20it": 3, "293": 3, "00it": 3, "0x14bf49370": 3, "99it": 3, "71": 3, "76it": 3, "0x14b68efc0": 3, "0x150d9b0e0": 3, "0x150babcb0": 3, "04": 3, "25it": 3, "0x14c6faf00": 3, "0x150160080": 3, "0x14f481d30": 3, "83it": 3, "58": 3, "94it": 3, "81128464457333": 3, "0x14c8938c0": 3, "layer": 3, "obvious": 3, "nonscaleddiagonalgaussianmov": 3, "assert": 3, "isinst": 3, "super": 3, "new_point": 3, "tmp": 3, "71it": 3, "49": 3, "286": 3, "24it": 3, "59": 3, "291": 3, "52it": 3, "288": 3}, "objects": {"eryn.backends": [[5, 0, 1, "", "Backend"], [5, 0, 1, "", "HDFBackend"]], "eryn.backends.Backend": [[5, 1, 1, "", "accepted"], [5, 1, 1, "", "betas"], [5, 1, 1, "", "blobs"], [5, 1, 1, "", "branch_names"], [5, 1, 1, "", "chain"], [5, 1, 1, "", "dtype"], [5, 2, 1, "", "get_a_sample"], [5, 2, 1, "", "get_autocorr_thin_burn"], [5, 2, 1, "", "get_autocorr_time"], [5, 2, 1, "", "get_betas"], [5, 2, 1, "", "get_blobs"], [5, 2, 1, "", "get_chain"], [5, 2, 1, "", "get_evidence_estimate"], [5, 2, 1, "", "get_gelman_rubin_convergence_diagnostic"], [5, 2, 1, "", "get_inds"], [5, 2, 1, "", "get_info"], [5, 2, 1, "", "get_last_sample"], [5, 2, 1, "", "get_log_like"], [5, 2, 1, "", "get_log_posterior"], [5, 2, 1, "", "get_log_prior"], [5, 2, 1, "", "get_move_info"], [5, 2, 1, "", "get_nleaves"], [5, 2, 1, "", "get_value"], [5, 2, 1, "", "grow"], [5, 2, 1, "", "has_blobs"], [5, 1, 1, "", "inds"], [5, 1, 1, "", "initiailized"], [5, 1, 1, "", "iteration"], [5, 1, 1, "", "log_like"], [5, 1, 1, "", "log_prior"], [5, 1, 1, "", "move_info"], [5, 1, 1, "", "move_keys"], [5, 1, 1, "", "nbranches"], [5, 1, 1, "", "ndims"], [5, 1, 1, "", "nleaves_max"], [5, 1, 1, "", "ntemps"], [5, 1, 1, "", "nwalkers"], [5, 2, 1, "", "reset"], [5, 1, 1, "", "reset_args"], [5, 2, 1, "", "reset_base"], [5, 1, 1, "", "reset_kwargs"], [5, 1, 1, "", "rj"], [5, 1, 1, "", "rj_accepted"], [5, 2, 1, "", "save_step"], [5, 3, 1, "", "shape"], [5, 1, 1, "", "store_missing_leaves"]], "eryn.backends.HDFBackend": [[5, 3, 1, "", "accepted"], [5, 3, 1, "", "branch_names"], [5, 2, 1, "", "get_a_sample"], [5, 2, 1, "", "get_autocorr_thin_burn"], [5, 2, 1, "", "get_autocorr_time"], [5, 2, 1, "", "get_betas"], [5, 2, 1, "", "get_blobs"], [5, 2, 1, "", "get_chain"], [5, 2, 1, "", "get_evidence_estimate"], [5, 2, 1, "", "get_gelman_rubin_convergence_diagnostic"], [5, 2, 1, "", "get_inds"], [5, 2, 1, "", "get_info"], [5, 2, 1, "", "get_last_sample"], [5, 2, 1, "", "get_log_like"], [5, 2, 1, "", "get_log_posterior"], [5, 2, 1, "", "get_log_prior"], [5, 2, 1, "", "get_move_info"], [5, 2, 1, "", "get_nleaves"], [5, 2, 1, "", "get_value"], [5, 2, 1, "", "grow"], [5, 2, 1, "", "has_blobs"], [5, 3, 1, "", "initialized"], [5, 3, 1, "", "iteration"], [5, 3, 1, "", "move_keys"], [5, 3, 1, "", "nbranches"], [5, 3, 1, "", "ndims"], [5, 3, 1, "", "nleaves_max"], [5, 3, 1, "", "ntemps"], [5, 3, 1, "", "nwalkers"], [5, 2, 1, "", "open"], [5, 3, 1, "", "random_state"], [5, 2, 1, "", "reset"], [5, 3, 1, "", "reset_args"], [5, 2, 1, "", "reset_base"], [5, 3, 1, "", "reset_kwargs"], [5, 3, 1, "", "rj"], [5, 3, 1, "", "rj_accepted"], [5, 2, 1, "", "save_step"], [5, 3, 1, "", "shape"], [5, 3, 1, "", "swaps_accepted"]], "eryn.ensemble": [[6, 0, 1, "", "EnsembleSampler"]], "eryn.ensemble.EnsembleSampler": [[6, 3, 1, "", "acceptance_fraction"], [6, 2, 1, "", "compute_log_like"], [6, 2, 1, "", "compute_log_prior"], [6, 2, 1, "", "get_autocorr_time"], [6, 2, 1, "", "get_betas"], [6, 2, 1, "", "get_blobs"], [6, 2, 1, "", "get_chain"], [6, 2, 1, "", "get_inds"], [6, 2, 1, "", "get_last_sample"], [6, 2, 1, "", "get_log_like"], [6, 2, 1, "", "get_log_posterior"], [6, 2, 1, "", "get_log_prior"], [6, 2, 1, "", "get_model"], [6, 2, 1, "", "get_nleaves"], [6, 2, 1, "", "get_value"], [6, 3, 1, "", "priors"], [6, 3, 1, "", "random_state"], [6, 2, 1, "", "reset"], [6, 3, 1, "", "rj_acceptance_fraction"], [6, 2, 1, "", "run_mcmc"], [6, 2, 1, "", "sample"], [6, 3, 1, "", "swap_acceptance_fraction"]], "eryn.moves": [[7, 0, 1, "", "CombineMove"], [7, 0, 1, "", "DistributionGenerate"], [7, 0, 1, "", "DistributionGenerateRJ"], [7, 0, 1, "", "GaussianMove"], [7, 0, 1, "", "GroupMove"], [7, 0, 1, "", "GroupStretchMove"], [7, 0, 1, "", "MHMove"], [7, 0, 1, "", "MTDistGenMove"], [7, 0, 1, "", "MTDistGenMoveRJ"], [7, 0, 1, "", "Move"], [7, 0, 1, "", "MultipleTryMove"], [7, 0, 1, "", "RedBlueMove"], [7, 0, 1, "", "ReversibleJumpMove"], [7, 0, 1, "", "StretchMove"]], "eryn.moves.CombineMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "acceptance_fraction_separate"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 3, 1, "", "periodic"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.DistributionGenerate": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.DistributionGenerateRJ": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_model_change_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.GaussianMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.GroupMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "choose_c_vals"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "find_friends"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_friends"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.GroupStretchMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "adjust_factors"], [7, 2, 1, "", "choose_c_vals"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "find_friends"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_new_points"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_friends"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.MHMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.MTDistGenMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_mt_log_posterior"], [7, 2, 1, "", "get_mt_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "readout_adjustment"], [7, 2, 1, "", "set_coords_and_inds"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 2, 1, "", "special_generate_func"], [7, 2, 1, "", "special_generate_logpdf"], [7, 2, 1, "", "special_like_func"], [7, 2, 1, "", "special_prior_func"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.MTDistGenMoveRJ": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_model_change_proposal"], [7, 2, 1, "", "get_mt_log_posterior"], [7, 2, 1, "", "get_mt_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "readout_adjustment"], [7, 2, 1, "", "set_coords_and_inds"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 2, 1, "", "special_generate_func"], [7, 2, 1, "", "special_generate_logpdf"], [7, 2, 1, "", "special_like_func"], [7, 2, 1, "", "special_prior_func"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.Move": [[7, 1, 1, "", "Note"], [7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 1, 1, "", "gibbs_sampling_setup"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 1, 1, "", "num_proposals"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"], [7, 1, 1, "", "use_gpu"], [7, 1, 1, "", "xp"]], "eryn.moves.MultipleTryMove": [[7, 2, 1, "", "get_mt_log_posterior"], [7, 2, 1, "", "get_mt_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "readout_adjustment"], [7, 2, 1, "", "special_generate_func"], [7, 2, 1, "", "special_generate_logpdf"], [7, 2, 1, "", "special_like_func"], [7, 2, 1, "", "special_prior_func"]], "eryn.moves.RedBlueMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.ReversibleJumpMove": [[7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_model_change_proposal"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.StretchMove": [[7, 1, 1, "", "a"], [7, 3, 1, "", "acceptance_fraction"], [7, 3, 1, "", "accepted"], [7, 2, 1, "", "adjust_factors"], [7, 2, 1, "", "choose_c_vals"], [7, 2, 1, "", "cleanup_proposals_gibbs"], [7, 2, 1, "", "compute_log_posterior_basic"], [7, 2, 1, "", "ensure_ordering"], [7, 2, 1, "", "fix_logp_gibbs"], [7, 2, 1, "", "get_new_points"], [7, 2, 1, "", "get_proposal"], [7, 2, 1, "", "gibbs_sampling_setup_iterator"], [7, 2, 1, "", "propose"], [7, 1, 1, "", "return_gpu"], [7, 2, 1, "", "setup"], [7, 2, 1, "", "setup_proposals"], [7, 3, 1, "", "temperature_control"], [7, 2, 1, "", "tune"], [7, 2, 1, "", "update"]], "eryn.moves.tempering": [[10, 0, 1, "", "TemperatureControl"], [10, 4, 1, "", "make_ladder"]], "eryn.moves.tempering.TemperatureControl": [[10, 2, 1, "", "compute_log_posterior_tempered"], [10, 2, 1, "", "temper_comps"], [10, 2, 1, "", "temperature_swaps"], [10, 2, 1, "", "tempered_likelihood"]], "eryn.prior": [[8, 0, 1, "", "MappedUniformDistribution"], [8, 0, 1, "", "ProbDistContainer"], [8, 4, 1, "", "log_uniform"], [8, 4, 1, "", "uniform_dist"]], "eryn.prior.MappedUniformDistribution": [[8, 2, 1, "", "logpdf"], [8, 2, 1, "", "rvs"]], "eryn.prior.ProbDistContainer": [[8, 2, 1, "", "logpdf"], [8, 1, 1, "", "ndim"], [8, 2, 1, "", "ppf"], [8, 1, 1, "", "priors"], [8, 1, 1, "", "priors_in"], [8, 2, 1, "", "rvs"], [8, 1, 1, "", "use_cupy"]], "eryn.state": [[9, 0, 1, "", "Branch"], [9, 0, 1, "", "BranchSupplimental"], [9, 0, 1, "", "State"]], "eryn.state.Branch": [[9, 3, 1, "", "nleaves"]], "eryn.state.BranchSupplimental": [[9, 2, 1, "", "add_objects"], [9, 3, 1, "", "contained_objects"], [9, 3, 1, "", "flat"], [9, 1, 1, "", "holder"], [9, 2, 1, "", "put_along_axis"], [9, 2, 1, "", "remove_objects"], [9, 2, 1, "", "take_along_axis"]], "eryn.state.State": [[9, 3, 1, "", "branch_names"], [9, 3, 1, "", "branches_coords"], [9, 3, 1, "", "branches_inds"], [9, 3, 1, "", "branches_supplimental"], [9, 2, 1, "", "get_log_posterior"]], "eryn.utils": [[11, 0, 1, "", "AdjustStretchProposalScale"], [11, 0, 1, "", "PeriodicContainer"], [11, 0, 1, "", "SearchConvergeStopping"], [11, 0, 1, "", "Stopping"], [11, 0, 1, "", "TransformContainer"], [11, 0, 1, "", "Update"], [11, 5, 0, "-", "utility"]], "eryn.utils.AdjustStretchProposalScale": [[11, 2, 1, "", "__call__"]], "eryn.utils.PeriodicContainer": [[11, 2, 1, "", "distance"], [11, 2, 1, "", "wrap"]], "eryn.utils.SearchConvergeStopping": [[11, 2, 1, "", "__call__"], [11, 1, 1, "", "iters_consecutive"], [11, 1, 1, "", "past_like_best"]], "eryn.utils.Stopping": [[11, 2, 1, "", "__call__"]], "eryn.utils.TransformContainer": [[11, 2, 1, "", "both_transforms"], [11, 2, 1, "", "fill_values"], [11, 2, 1, "", "transform_base_parameters"]], "eryn.utils.Update": [[11, 2, 1, "", "__call__"]], "eryn.utils.utility": [[11, 4, 1, "", "get_acf"], [11, 4, 1, "", "get_integrated_act"], [11, 4, 1, "", "groups_from_inds"], [11, 4, 1, "", "psrf"], [11, 4, 1, "", "stepping_stone_log_evidence"], [11, 4, 1, "", "thermodynamic_integration_log_evidence"]]}, "objtypes": {"0": "py:class", "1": "py:attribute", "2": "py:method", "3": "py:property", "4": "py:function", "5": "py:module"}, "objnames": {"0": ["py", "class", "Python class"], "1": ["py", "attribute", "Python attribute"], "2": ["py", "method", "Python method"], "3": ["py", "property", "Python property"], "4": ["py", "function", "Python function"], "5": ["py", "module", "Python module"]}, "titleterms": {"eryn": [0, 2, 3, 4], "multi": [0, 2], "purpos": [0, 2], "mcmc": [0, 2, 3], "sampler": [0, 2, 3, 11], "get": [0, 2, 3], "start": [0, 2, 3], "prerequisit": [0, 2], "instal": [0, 2], "run": [0, 2], "test": [0, 2], "contribut": [0, 2], "version": [0, 2], "citat": [0, 2], "author": [0, 2], "contibutor": [0, 2], "licens": [0, 2], "acknowledg": [0, 2], "code": 1, "project": 1, "todo": 1, "welcom": 2, "": 2, "document": 2, "tutori": [2, 3], "gener": 2, "inform": 2, "basic": 3, "The": 3, "tree": 3, "metaphor": 3, "ensembl": [3, 6], "backend": [3, 5], "object": 3, "5": 3, "dimension": 3, "arrai": 3, "state": [3, 9], "branch": 3, "parallel": [3, 10], "temper": [3, 10], "add": 3, "revers": [3, 7], "jump": [3, 7], "model": [3, 11], "count": 3, "uncertainti": 3, "multipl": [3, 7], "move": [3, 7], "gibb": 3, "sampl": 3, "util": [3, 7, 11], "transform": 3, "contain": [3, 8, 11], "multivari": 3, "prior": [3, 8], "distribut": [3, 8], "period": [3, 11], "stop": [3, 11], "updat": [3, 11], "function": [3, 11], "more": 4, "advanc": 4, "exampl": [3, 4], "search": 4, "gaussian": 4, "puls": 4, "2d": 4, "choos": 4, "optim": 4, "b": 4, "spline": 4, "order": 4, "regular": 5, "hdf": 5, "parent": 7, "class": [7, 11], "metropoli": 7, "hast": 7, "mh": 7, "implement": [7, 11], "red": 7, "blue": 7, "group": 7, "mutlipl": 7, "try": 7, "rj": 7, "probabl": 8, "avail": 8, "transformcontain": 11, "base": 11, "other": 11, "diagon": 3, "covari": 3}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "nbsphinx": 4, "sphinx": 60}, "alltitles": {"Code Projects": [[1, "code-projects"]], "Code TODOs": [[1, "code-todos"]], "Backends": [[5, "backends"]], "Regular Backend": [[5, "regular-backend"]], "HDF Backend": [[5, "hdf-backend"]], "Ensemble": [[6, "ensemble"]], "Moves": [[7, "moves"], [3, "Moves"]], "Move Parent Class": [[7, "move-parent-class"]], "Metropolis-Hastings Moves": [[7, "metropolis-hastings-moves"]], "MH Parent Class": [[7, "mh-parent-class"]], "Implemented MH Moves": [[7, "implemented-mh-moves"]], "Red-Blue Moves": [[7, "red-blue-moves"]], "Red-Blue Parent Class": [[7, "red-blue-parent-class"]], "Implemented Red-Blue Moves": [[7, "implemented-red-blue-moves"]], "Group Moves": [[7, "group-moves"]], "Group Parent Class": [[7, "group-parent-class"]], "Implemented Group Moves": [[7, "implemented-group-moves"]], "Reversible Jump Moves": [[7, "reversible-jump-moves"]], "Reversible Jump Parent Class": [[7, "reversible-jump-parent-class"]], "Implemented Reversible Jump Moves": [[7, "implemented-reversible-jump-moves"]], "Mutliple Try Moves": [[7, "mutliple-try-moves"]], "Mutliple Try Parent Class": [[7, "mutliple-try-parent-class"]], "Implemented Multiple Try Moves": [[7, "implemented-multiple-try-moves"]], "Implemented Multiple Try RJ Moves": [[7, "implemented-multiple-try-rj-moves"]], "Utility Moves": [[7, "utility-moves"]], "Priors": [[8, "priors"]], "Probability Distribution Container": [[8, "probability-distribution-container"]], "Available Probability Distributions": [[8, "available-probability-distributions"]], "State": [[9, "state"]], "Parallel Tempering": [[10, "parallel-tempering"], [3, "Parallel-Tempering"]], "Eryn: a multi-purpose MCMC sampler": [[0, "eryn-a-multi-purpose-mcmc-sampler"], [2, "eryn-a-multi-purpose-mcmc-sampler"]], "Getting Started": [[0, "getting-started"], [2, "getting-started"]], "Prerequisites": [[0, "prerequisites"], [2, "prerequisites"]], "Installing": [[0, "installing"], [2, "installing"]], "Running the Tests": [[0, "running-the-tests"], [2, "running-the-tests"]], "Contributing": [[0, "contributing"], [2, "contributing"]], "Versioning": [[0, "versioning"], [2, "versioning"]], "Citation": [[0, "citation"], [2, "citation"]], "Authors": [[0, "authors"], [2, "authors"]], "Contibutors": [[0, "contibutors"], [2, "contibutors"]], "License": [[0, "license"], [2, "license"]], "Acknowledgments": [[0, "acknowledgments"], [2, "acknowledgments"]], "Welcome to Eryn\u2019s documentation!": [[2, "welcome-to-eryn-s-documentation"]], "Documentation:": [[2, null]], "Tutorial:": [[2, null]], "General Information:": [[2, null]], "Eryn Basic Tutorial": [[3, "Eryn-Basic-Tutorial"]], "MCMC Basics": [[3, "MCMC-Basics"]], "The Tree Metaphor": [[3, "The-Tree-Metaphor"]], "Getting Started with the Ensemble Sampler": [[3, "Getting-Started-with-the-Ensemble-Sampler"]], "Backend Objects": [[3, "Backend-Objects"]], "5-dimensional Arrays": [[3, "5-dimensional-Arrays"]], "State Objects": [[3, "State-Objects"]], "Branches": [[3, "Branches"]], "Add Reversible Jump MCMC (model count uncertainty)": [[3, "Add-Reversible-Jump-MCMC-(model-count-uncertainty)"]], "Add multiple branches": [[3, "Add-multiple-branches"]], "Example diagonal covariance move": [[3, "Example-diagonal-covariance-move"]], "Gibbs Sampling": [[3, "Gibbs-Sampling"]], "Utilities": [[3, "Utilities"], [11, "utilities"]], "Transform Container": [[3, "Transform-Container"]], "Multivariate Prior Distributions": [[3, "Multivariate-Prior-Distributions"]], "Periodic Container": [[3, "Periodic-Container"], [11, "periodic-container"]], "Stopping & Update Functions": [[3, "Stopping-&-Update-Functions"]], "More Advanced Eryn Examples": [[4, "More-Advanced-Eryn-Examples"]], "Searching for Gaussian pulses in 2D": [[4, "Searching-for-Gaussian-pulses-in-2D"]], "Choosing the optimal B-Spline order": [[4, "Choosing-the-optimal-B-Spline-order"]], "TransformContainer": [[11, "transformcontainer"]], "Update functions": [[11, "update-functions"]], "Update Base Class": [[11, "update-base-class"]], "Implemented Update Functions": [[11, "implemented-update-functions"]], "Stopping functions": [[11, "stopping-functions"]], "Stopping Base Class": [[11, "stopping-base-class"]], "Implemented Stopping Functions": [[11, "implemented-stopping-functions"]], "Sampler Model Container": [[11, "sampler-model-container"]], "Other Utility Functions": [[11, "module-eryn.utils.utility"]]}, "indexentries": {"adjuststretchproposalscale (class in eryn.utils)": [[11, "eryn.utils.AdjustStretchProposalScale"]], "periodiccontainer (class in eryn.utils)": [[11, "eryn.utils.PeriodicContainer"]], "searchconvergestopping (class in eryn.utils)": [[11, "eryn.utils.SearchConvergeStopping"]], "stopping (class in eryn.utils)": [[11, "eryn.utils.Stopping"]], "transformcontainer (class in eryn.utils)": [[11, "eryn.utils.TransformContainer"]], "update (class in eryn.utils)": [[11, "eryn.utils.Update"]], "__call__() (eryn.utils.adjuststretchproposalscale method)": [[11, "eryn.utils.AdjustStretchProposalScale.__call__"]], "__call__() (eryn.utils.searchconvergestopping method)": [[11, "eryn.utils.SearchConvergeStopping.__call__"]], "__call__() (eryn.utils.stopping class method)": [[11, "eryn.utils.Stopping.__call__"]], "__call__() (eryn.utils.update class method)": [[11, "eryn.utils.Update.__call__"]], "both_transforms() (eryn.utils.transformcontainer method)": [[11, "eryn.utils.TransformContainer.both_transforms"]], "distance() (eryn.utils.periodiccontainer method)": [[11, "eryn.utils.PeriodicContainer.distance"]], "eryn.utils.utility": [[11, "module-eryn.utils.utility"]], "fill_values() (eryn.utils.transformcontainer method)": [[11, "eryn.utils.TransformContainer.fill_values"]], "get_acf() (in module eryn.utils.utility)": [[11, "eryn.utils.utility.get_acf"]], "get_integrated_act() (in module eryn.utils.utility)": [[11, "eryn.utils.utility.get_integrated_act"]], "groups_from_inds() (in module eryn.utils.utility)": [[11, "eryn.utils.utility.groups_from_inds"]], "iters_consecutive (eryn.utils.searchconvergestopping attribute)": [[11, "eryn.utils.SearchConvergeStopping.iters_consecutive"]], "module": [[11, "module-eryn.utils.utility"]], "past_like_best (eryn.utils.searchconvergestopping attribute)": [[11, "eryn.utils.SearchConvergeStopping.past_like_best"]], "psrf() (in module eryn.utils.utility)": [[11, "eryn.utils.utility.psrf"]], "stepping_stone_log_evidence() (in module eryn.utils.utility)": [[11, "eryn.utils.utility.stepping_stone_log_evidence"]], "thermodynamic_integration_log_evidence() (in module eryn.utils.utility)": [[11, "eryn.utils.utility.thermodynamic_integration_log_evidence"]], "transform_base_parameters() (eryn.utils.transformcontainer method)": [[11, "eryn.utils.TransformContainer.transform_base_parameters"]], "wrap() (eryn.utils.periodiccontainer method)": [[11, "eryn.utils.PeriodicContainer.wrap"]]}}) \ No newline at end of file