config_sample_2pop_interventions_test.yml

name: sample_2pop
setup_name: minimal
start_date: 2020-01-31
end_date: 2020-05-31
data_path: data
nslots: 1

spatial_setup:
  geodata: geodata_sample_2pop.csv
  mobility: mobility_sample_2pop.csv
  popnodes: population
  nodenames: province_name

compartments:
  infection_stage: ["S", "E", "I", "R"]

seir:
  integration:
    method: rk4
    dt: 1 / 10
  parameters:
    sigma:
      value:
        distribution: fixed
        value: 1 / 4
    gamma:
      value:
        distribution: fixed
        value: 1 / 5
    Ro:
      value:
        distribution: fixed
        value: 3
  transitions:
    - source: ["S"]
      destination: ["E"]
      rate: ["Ro * gamma"]
      proportional_to: [["S"],["I"]]
      proportion_exponent: ["1","1"]
    - source: ["E"]
      destination: ["I"]
      rate: ["sigma"]
      proportional_to: ["E"]
      proportion_exponent: ["1"]
    - source: ["I"]
      destination: ["R"]
      rate: ["gamma"]
      proportional_to: ["I"]
      proportion_exponent: ["1"]

seeding:
  method: FromFile
  seeding_file: data/seeding_2pop.csv

interventions:
  scenarios:
    - None
  settings:
    None:
      template: Reduce
      parameter: r0
      period_start_date: 2020-04-01
      period_end_date: 2020-05-15
      value:
        distribution: fixed
        value: 0