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Add Nextflow for TES Regression testing #551

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vsmalladi opened this issue Dec 13, 2023 · 1 comment · Fixed by #782
Closed

Add Nextflow for TES Regression testing #551

vsmalladi opened this issue Dec 13, 2023 · 1 comment · Fixed by #782
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@vsmalladi
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Problem:
For Nextflow TES add in this repo for regression testing

https://github.com/seqeralabs/nf-canary

@vsmalladi vsmalladi added the Testing Issues related to testing label Dec 13, 2023
@vsmalladi vsmalladi self-assigned this Mar 8, 2024
@vsmalladi
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To run Nextflow we will need the following requirements:

TES Task:
CPU: 2
Mem: 32 GB
Docker Nextflow: nextflow/nextflow:24.04.4
Command: nextflow run main.nf -w 'az://work'

Nextflow Config

plugins {
   id 'nf-ga4gh'
 }

process {
  executor = 'tes'
}

azure {
       storage {
          accountName = 
          accountKey = 
       }
    }


tes.endpoint= 
tes.basicUsername =
tes.basicPassword = 

process {
    container     = "docker.io/library/ubuntu:latest"
}

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