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Try to recapitulate Simon's SRA wishlist from BigQuery alone
#68
opened Feb 7, 2025 by
turbomam
updated Feb 11, 2025
run lexmatch agaisnt nmdc-schema and push SSSOM output to repo
#69
opened Feb 7, 2025 by
turbomam
updated Feb 7, 2025
strategy for keeping Biosample DuckDB up to date
#64
opened Feb 7, 2025 by
turbomam
updated Feb 7, 2025
strategy for keeping supplementary MongoDB collections up to date?
#63
opened Feb 7, 2025 by
turbomam
updated Feb 7, 2025
use modification date of
biosample_set.xml.gz
for --value
option of add_duckdb_key_value_row.py
in Makefiles/ncbi_metadata.Makefile
#41
opened Jan 8, 2025 by
turbomam
updated Jan 8, 2025
some scripts still access the Biosample PostgreSQL database
#25
opened Sep 4, 2024 by
turbomam
updated Sep 4, 2024
review anthropogenic classes in env_local_scale for soil
#12
opened Aug 30, 2024 by
turbomam
updated Sep 3, 2024
update external_metadata_awareness/extract_value_set_evidence.py to find semantic similarity
#21
opened Sep 2, 2024 by
turbomam
updated Sep 2, 2024
jaccard_distance
in local/ncbi-mims-soil-biosamples-env_local_scale-annotated.tsv
doesn't look right
#18
opened Sep 2, 2024 by
turbomam
updated Sep 2, 2024
review on proposed subsetting for soil env_local_scale terms
#14
opened Aug 30, 2024 by
aclum
updated Aug 30, 2024
6 tasks
how many terms to display in the submission portal per env context term
#15
opened Aug 30, 2024 by
aclum
updated Aug 30, 2024
banana plantation so specific... level out with just agricultural field
#13
opened Aug 30, 2024 by
turbomam
updated Aug 30, 2024
remove semantically similar classes from candidate lists
#11
opened Aug 30, 2024 by
turbomam
updated Aug 30, 2024
Add user guide to Improvements or additions to documentation
README.md
documentation
#2
opened Aug 21, 2024 by
eecavanna
updated Aug 21, 2024
load (and analyze) EBI/ENA biosample metadata specifications (checklists, etc)
#1
opened Aug 16, 2024 by
turbomam
updated Aug 16, 2024
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