From 0fa499a260478f135ba66b4e5cef37f9a53619bd Mon Sep 17 00:00:00 2001
From: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: Tue, 5 Mar 2024 16:26:31 +0200
Subject: [PATCH] up (#109)

---
 DESCRIPTION        | 2 +-
 R/plotPrevalence.R | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 0aea6368..f1fcb2e2 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: miaViz
 Title: Microbiome Analysis Plotting and Visualization
-Version: 1.11.1
+Version: 1.11.2
 Authors@R: 
     c(person(given = "Tuomas", family = "Borman", role = c("aut", "cre"),
              email = "tuomas.v.borman@utu.fi",
diff --git a/R/plotPrevalence.R b/R/plotPrevalence.R
index 2400196c..a67ea4b3 100644
--- a/R/plotPrevalence.R
+++ b/R/plotPrevalence.R
@@ -239,8 +239,8 @@ setMethod("plotPrevalentAbundance", signature = c(x = "SummarizedExperiment"),
             stop("'facet_by' must be in taxonomyRanks.",  call. = FALSE)
         }
         
-        x <- mia:::.agg_for_prevalence(x, rank, na.rm = TRUE, relabel = TRUE,
-                                       ...)
+        x <- mia:::.agg_for_prevalence(
+            x, rank, agg.na.rm = TRUE, relabel = TRUE, ...)
         label <- .norm_label(label, x)
         #
         plot_data <- .get_prevalence_plot_point_data(x, assay.type, 
@@ -559,4 +559,4 @@ setMethod("plotTaxaPrevalence", signature = c(x = "ANY"),
             .Deprecated(old ="plotTaxaPrevalence", new = "plotFeaturePrevalence", msg = "The 'plotTaxaPrevalence' function is deprecated. Use 'plotFeaturePrevalence' instead.")
             plotFeaturePrevalence(x, ...)
           }
-)
\ No newline at end of file
+)