From 5345adc5ccd2d6b9f2c2333021c252cc1e12b10f Mon Sep 17 00:00:00 2001
From: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: Fri, 7 Feb 2025 10:55:41 +0200
Subject: [PATCH] Update mmuphin_meta_analysis.qmd

---
 inst/pages/mmuphin_meta_analysis.qmd | 7 -------
 1 file changed, 7 deletions(-)

diff --git a/inst/pages/mmuphin_meta_analysis.qmd b/inst/pages/mmuphin_meta_analysis.qmd
index a13b6953..0abaeff7 100644
--- a/inst/pages/mmuphin_meta_analysis.qmd
+++ b/inst/pages/mmuphin_meta_analysis.qmd
@@ -113,13 +113,6 @@ se_pathway <- sampleMetadata |>
 
 First, let's look into the relative abundance data.
 
-```{r}
-# Disable running the analysis temporaly. There is a problem in mia
-# agglomeration and curatedMetagenomicData
-# https://github.com/waldronlab/curatedMetagenomicData/pull/309
-knitr::opts_chunk$set(eval = FALSE)
-```
-
 ### Performing batch (study) effect adjustment with adjust_batch for relative abundance {#sec-batch-effect-adjustment}
 
 In this analysis, we are using two input files. The first input file is