scopus.bib

Scopus
EXPORT DATE: 18 April 2022

@ARTICLE{Vásquez-Ponce202255,
author={Vásquez-Ponce, F. and Higuera-Llantén, S. and Parás-Silva, J. and Gamboa-Acuña, N. and Cortés, J. and Opazo-Capurro, A. and Ugalde, J.A. and Alcalde-Rico, M. and Olivares-Pacheco, J.},
title={Genetic characterization of clinically relevant class 1 integrons carried by multidrug resistant bacteria (MDRB) isolated from the gut microbiota of highly antibiotic treated Salmo salar},
journal={Journal of Global Antimicrobial Resistance},
year={2022},
volume={29},
pages={55-62},
doi={10.1016/j.jgar.2022.02.003},
note={cited By 0},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85126369420&doi=10.1016%2fj.jgar.2022.02.003&partnerID=40&md5=4109559036b0eeffc63a87da4e151ed7},
document_type={Article},
source={Scopus},
}

@ARTICLE{Wu2022,
author={Wu, J. and Danko, D. and Afshinnekoo, E. and Bezdan, D. and Bhattacharyya, M. and Castro-Nallar, E. and Chmielarczyk, A. and Hazrin-Chong, N.H. and Deng, Y. and Dias-Neto, E. and Frolova, A. and Mason-Buck, G. and Iraola, G. and Jang, S. and Łabaj, P. and Lee, P.K.H. and Nieto-Caballero, M. and Osuolale, O.O. and Ouzounis, C.A. and Perlin, M.H. and Prithiviraj, B. and Rascovan, N. and Różańska, A. and Schriml, L.M. and Semmler, T. and Suzuki, H. and Ugalde, J.A. and Young, B. and Werner, J. and Zambrano, M.M. and Zhao, Y. and Mason, C. and Shi, T.},
title={Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association},
journal={Environmental Research},
year={2022},
volume={207},
doi={10.1016/j.envres.2021.112183},
art_number={112183},
note={cited By 1},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85117361601&doi=10.1016%2fj.envres.2021.112183&partnerID=40&md5=1408886ff2d83f81e2a050be81fa8ea4},
document_type={Article},
source={Scopus},
}

@ARTICLE{Toro2022,
author={Toro, C.S. and Salazar, J.C. and Montero, D.A. and Ugalde, J.A. and Díaz, J. and Cádiz, L.A. and Henríquez, T. and García, C. and Díaz, P. and Camponovo, R. and Hermosilla, G. and Ulloa, M.T.},
title={Antimicrobial Resistance Dynamics in Chilean Shigella sonnei Strains Within Two Decades: Role of Shigella Resistance Locus Pathogenicity Island and Class 1 and Class 2 Integrons},
journal={Frontiers in Microbiology},
year={2022},
volume={12},
doi={10.3389/fmicb.2021.794470},
art_number={794470},
note={cited By 0},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85124970214&doi=10.3389%2ffmicb.2021.794470&partnerID=40&md5=2b31731160aed82bb9e3339665416ac2},
document_type={Article},
source={Scopus},
}

@ARTICLE{Danko20213376,
author={Danko, D. and Bezdan, D. and Afshin, E.E. and Ahsanuddin, S. and Bhattacharya, C. and Butler, D.J. and Chng, K.R. and Donnellan, D. and Hecht, J. and Jackson, K. and Kuchin, K. and Karasikov, M. and Lyons, A. and Mak, L. and Meleshko, D. and Mustafa, H. and Mutai, B. and Neches, R.Y. and Ng, A. and Nikolayeva, O. and Nikolayeva, T. and Png, E. and Ryon, K.A. and Sanchez, J.L. and Shaaban, H. and Sierra, M.A. and Thomas, D. and Young, B. and Abudayyeh, O.O. and Alicea, J. and Bhattacharyya, M. and Blekhman, R. and Castro-Nallar, E. and Cañas, A.M. and Chatziefthimiou, A.D. and Crawford, R.W. and De Filippis, F. and Deng, Y. and Desnues, C. and Dias-Neto, E. and Dybwad, M. and Elhaik, E. and Ercolini, D. and Frolova, A. and Gankin, D. and Gootenberg, J.S. and Graf, A.B. and Green, D.C. and Hajirasouliha, I. and Hastings, J.J.A. and Hernandez, M. and Iraola, G. and Jang, S. and Kahles, A. and Kelly, F.J. and Knights, K. and Kyrpides, N.C. and Łabaj, P.P. and Lee, P.K.H. and Leung, M.H.Y. and Ljungdahl, P.O. and Mason-Buck, G. and McGrath, K. and Meydan, C. and Mongodin, E.F. and Moraes, M.O. and Nagarajan, N. and Nieto-Caballero, M. and Noushmehr, H. and Oliveira, M. and Ossowski, S. and Osuolale, O.O. and Özcan, O. and Paez-Espino, D. and Rascovan, N. and Richard, H. and Rätsch, G. and Schriml, L.M. and Semmler, T. and Sezerman, O.U. and Shi, L. and Shi, T. and Siam, R. and Song, L.H. and Suzuki, H. and Court, D.S. and Tighe, S.W. and Tong, X. and Udekwu, K.I. and Ugalde, J.A. and Valentine, B. and Vassilev, D.I. and Vayndorf, E.M. and Velavan, T.P. and Wu, J. and Zambrano, M.M. and Zhu, J. and Zhu, S. and Mason, C.E. and Abdullah, N. and Abraao, M. and Adel, A.-H. and Afaq, M. and Al-Quaddoomi, F.S. and Alam, I. and Albuquerque, G.E. and Alexiev, A. and Ali, K. and Alvarado-Arnez, L.E. and Aly, S. and Amachee, J. and Amorim, M.G. and Ampadu, M. and Amran, M.A.-F. and An, N. and Andrew, W. and Andrianjakarivony, H. and Angelov, M. and Antelo, V. and Aquino, C. and Aranguren, Á. and Araujo, L.F. and Vasquez Arevalo, H.F. and Arevalo, J. and Arnan, C. and Alvarado Arnez, L.E. and Arredondo, F. and Arthur, M. and Asenjo, F. and Aung, T.S. and Auvinet, J. and Aventin, N. and Ayaz, S. and Baburyan, S. and Bakere, A.-M. and Bakhl, K. and Bartelli, T.F. and Batdelger, E. and Baudon, F. and Becher, K. and Bello, C. and Benchouaia, M. and Benisty, H. and Benoiston, A.-S. and Benson, J. and Benítez, D. and Bernardes, J. and Bertrand, D. and Beurmann, S. and Bitard-Feildel, T. and Bittner, L. and Black, C. and Blanc, G. and Blyther, B. and Bode, T. and Boeri, J. and Boldgiv, B. and Bolzli, K. and Bordigoni, A. and Borrelli, C. and Bouchard, S. and Bouly, J.-P. and Boyd, A. and Branco, G.P. and Breschi, A. and Brindefalk, B. and Brion, C. and Briones, A. and Buczansla, P. and Burke, C.M. and Burrell, A. and Butova, A. and Buttar, I. and Bynoe, J. and Bönigk, S. and Bøifot, K.O. and Caballero, H. and Cai, X.W. and Calderon, D. and Cantillo, A. and Carbajo, M. and Carbone, A. and Cardenas, A. and Carrillo, K. and Casalot, L. and Castro, S. and Castro, A.V. and Castro, A. and Castro, A.V.B. and Cawthorne, S. and Cedillo, J. and Chaker, S. and Chalangal, J. and Chan, A. and Chasapi, A.I. and Chatziefthimiou, S. and Chaudhuri, S.R. and Chavan, A.K. and Chavez, F. and Chem, G. and Chen, X. and Chen, M. and Chen, J.-W. and Chernomoretz, A. and Chettouh, A. and Cheung, D. and Chicas, D. and Chiu, S. and Choudhry, H. and Chrispin, C. and Ciaramella, K. and Cifuentes, E. and Cohen, J. and Coil, D.A. and Collin, S. and Conger, C. and Conte, R. and Corsi, F. and Cossio, C.N. and Costa, A.F. and Cuebas, D. and D'Alessandro, B. and Dahlhausen, K.E. and Darling, A.E. and Das, P. and Davenport, L.B. and David, L. and Davidson, N.R. and Dayama, G. and Delmas, S. and Deng, C.K. and Dequeker, C. and Desert, A. and Devi, M. and Dezem, F.S. and Dias, C.N. and Donahoe, T.R. and Dorado, S. and Dorsey, L. and Dotsenko, V. and Du, S. and Dutan, A. and Eady, N. and Eisen, J.A. and Elaskandrany, M. and Epping, L. and Escalera-Antezana, J.P. and Ettinger, C.L. and Faiz, I. and Fan, L. and Farhat, N. and Faure, E. and Fauzi, F. and Feigin, C. and Felice, S. and Ferreira, L.P. and Figueroa, G. and Fleiss, A. and Flores, D. and Velasco Flores, J.L. and Fonseca, M.A.S. and Foox, J. and Forero, J.C. and Francis, A. and French, K. and Fresia, P. and Friedman, J. and Fuentes, J.J. and Galipon, J. and Garcia, M. and Garcia, L. and García, C. and Geiger, A. and Gerner, S.M. and Ghose, S.L. and Giang, D.P. and Giménez, M. and Giovannelli, D. and Githae, D. and Gkotzis, S. and Godoy, L. and Goldman, S. and Gonnet, G.H. and Gonzalez, J. and Gonzalez, A. and Gonzalez-Poblete, C. and Gray, A. and Gregory, T. and Greselle, C. and Guasco, S. and Guerra, J. and Gurianova, N. and Haehr, W. and Halary, S. and Hartkopf, F. and Hawkins-Zafarnia, A. and Hazrin-Chong, N.H. and Helfrich, E. and Hell, E. and Henry, T. and Hernandez, S. and Hernandez, P.L. and Hess-Homeier, D. and Hittle, L.E. and Hoan, N.X. and Holik, A. and Homma, C. and Hoxie, I. and Huber, M. and Humphries, E. and Hyland, S. and Hässig, A. and Häusler, R. and Hüsser, N. and Petit, R.A. and Iderzorig, B. and Igarashi, M. and Iqbal, S.B. and Ishikawa, S. and Ishizuka, S. and Islam, S. and Islam, R. and Ito, K. and Ito, S. and Ito, T. and Ivankovic, T. and Iwashiro, T. and Jackson, S. and Jacobs, J. and James, M. and Jaubert, M. and Jerier, M.-L. and Jiminez, E. and Jinfessa, A. and De Jong, Y. and Joo, H.W. and Jospin, G. and Kajita, T. and Ahmad Kassim, A.S. and Kato, N. and Kaur, A. and Kaur, I. and de Souza Gomes Kehdy, F. and Khadka, V.S. and Khan, S. and Khavari, M. and Ki, M. and Kim, G. and Kim, H.J. and Kim, S. and King, R.J. and KoLoMonaco, G. and Koag, E. and Kobko-Litskevitch, N. and Korshevniuk, M. and Kozhar, M. and Krebs, J. and Kubota, N. and Kuklin, A. and Kumar, S.S. and Kwong, R. and Kwong, L. and Lafontaine, I. and Lago, J. and Lai, T.Y. and Laine, E. and Laiola, M. and Lakhneko, O. and Lamba, I. and de Lamotte, G. and Lannes, R. and De Lazzari, E. and Leahy, M. and Lee, H. and Lee, Y. and Lee, L. and Lemaire, V. and Leong, E. and Lewandowska, D. and Li, C. and Liang, W. and Lin, M. and Lisboa, P. and Litskevitch, A. and Liu, E.M. and Liu, T. and Livia, M.A. and Lo, Y.H. and Losim, S. and Loubens, M. and Lu, J. and Lykhenko, O. and Lysakova, S. and Mahmoud, S. and Majid, S.A. and Makogon, N. and Maldonado, D. and Mallari, K. and Malta, T.M. and Mamun, M. and Manoir, D. and Marchandon, G. and Marciniak, N. and Marinovic, S. and Marques, B. and Mathews, N. and Matsuzaki, Y. and Matthys, V. and May, M. and McComb, E. and Meagher, A. and Melamed, A. and Menary, W. and Mendez, K.N. and Mendez, A. and Mendy, I.M. and Meng, I. and Menon, A. and Menor, M. and Meoded, R. and Merino, N. and Miah, K. and Mignotte, M. and Miketic, T. and Miranda, W. and Mitsios, A. and Miura, R. and Miyake, K. and Moccia, M.D. and Mohan, N. and Mohsin, M. and Moitra, K. and Moldes, M. and Molina, L. and Molinet, J. and Molomjamts, O.-E. and Moniruzzaman, E. and Moon, S. and de Oliveira Moraes, I. and Moreno, M. and Mosella, M.S. and Moser, J.W. and Mozsary, C. and Muehlbauer, A.L. and Muner, O. and Munia, M. and Munim, N. and Muscat, M. and Mustac, T. and Muñoz, C. and Nadalin, F. and Naeem, A. and Nagy-Szakal, D. and Nakagawa, M. and Narce, A. and Nasu, M. and Navarrete, I.G. and Naveed, H. and Nazario, B. and Nedunuri, N.R. and Neff, T. and Nesimi, A. and Ng, W.C. and Ng, S. and Nguyen, G. and Ngwa, E. and Nicolas, A. and Nicolas, P. and Nika, A. and Noorzi, H. and Nosrati, A. and Nunes, D.N. and O'Brien, K. and O'Hara, N.B. and Oken, G. and Olawoyin, R.A. and Oliete, J.Q. and Olmeda, K. and Oluwadare, T. and Oluwadare, I.A. and Ordioni, N. and Orpilla, J. and Orrego, J. and Ortega, M. and Osma, P. and Osuolale, I.O. and Osuolale, O.M. and Ota, M. and Oteri, F. and Oto, Y. and Ounit, R. and Ouzounis, C.A. and Pakrashi, S. and Paras, R. and Pardo-Este, C. and Park, Y.-J. and Pastuszek, P. and Patel, S. and Pathmanathan, J. and Patrignani, A. and Perez, M. and Peros, A. and Persaud, S. and Peters, A. and Phillips, A. and Pineda, L. and Pizzi, M.P. and Plaku, A. and Plaku, A. and Pompa-Hogan, B. and Portilla, M.G. and Posada, L. and Priestman, M. and Prithiviraj, B. and Priya, S. and Pugdeethosal, P. and Pugh, C.E. and Pulatov, B. and Pupiec, A. and Pyrshev, K. and Qing, T. and Rahiel, S. and Rahmatulloev, S. and Rajendran, K. and Ramcharan, A. and Ramirez-Rojas, A. and Rana, S. and Ratnanandan, P. and Read, T.D. and Rehrauer, H. and Richer, R. and Rivera, A. and Rivera, M. and Robertiello, A. and Robinson, C. and Rodríguez, P. and Rojas, N.A. and Roldán, P. and Rosario, A. and Roth, S. and Ruiz, M. and Boja Ruiz, S.E. and Russell, K. and Rybak, M. and Sabedot, T.S. and Sabina, M. and Saito, I. and Saito, Y. and Malca Salas, G.A. and Salazar, C. and San, K.M. and Sanchez, J. and Sanchir, K. and Sankar, R. and de Souza Santos, P.T. and Saravi, Z. and Sasaki, K. and Sato, Y. and Sato, M. and Sato, S. and Sato, R. and Sato, K. and Sayara, N. and Schaaf, S. and Schacher, O. and Schinke, A.-L.M. and Schlapbach, R. and Schori, C. and Schriml, J.R. and Segato, F. and Sepulveda, F. and Serpa, M.S. and De Sessions, P.F. and Severyn, J.C. and Shakil, M. and Shalaby, S. and Shari, A. and Shim, H. and Shirahata, H. and Shiwa, Y. and Da Silva, O. and Silva, J.M. and Simon, G. and Singh, S.K. and Sluzek, K. and Smith, R. and So, E. and Andreu Somavilla, N. and Sonohara, Y. and Rufino de Sousa, N. and Souza, C. and Sperry, J. and Sprinsky, N. and Stark, S.G. and La Storia, A. and Suganuma, K. and Suliman, H. and Sullivan, J. and Supie, A.A.M. and Suzuki, C. and Takagi, S. and Takahara, F. and Takahashi, N. and Takahashi, K. and Takeda, T. and Takenaka, I.K. and Tanaka, S. and Tang, A. and Man Tang, Y. and Tarcitano, E. and Tassinari, A. and Taye, M. and Terrero, A. and Thambiraja, E. and Thiébaut, A. and Thomas, S. and Thomas, A.M. and Togashi, Y. and Togashi, T. and Tomaselli, A. and Tomita, M. and Tomita, I. and Toth, O. and Toussaint, N.C. and Tran, J.M. and Truong, C. and Tsonev, S.I. and Tsuda, K. and Tsurumaki, T. and Tuz, M. and Tymoshenko, Y. and Urgiles, C. and Usui, M. and Vacant, S. and Vann, L.E. and Velter, F. and Ventorino, V. and Vera-Wolf, P. and Vicedomini, R. and Suarez-Villamil, M.A. and Vincent, S. and Vivancos-Koopman, R. and Wan, A. and Wang, C. and Warashina, T. and Watanabe, A. and Weekes, S. and Werner, J. and Westfall, D. and Wieler, L.H. and Williams, M. and Wolf, S.A. and Wong, B. and Wong, Y.L. and Wong, T. and Wright, R. and Wunderlin, T. and Yamanaka, R. and Yang, J. and Yano, H. and Yeh, G.C. and Yemets, O. and Yeskova, T. and Yoshikawa, S. and Zafar, L. and Zhang, Y. and Zhang, S. and Zhang, A. and Zheng, Y. and Zubenko, S.},
title={A global metagenomic map of urban microbiomes and antimicrobial resistance},
journal={Cell},
year={2021},
volume={184},
number={13},
pages={3376-3393.e17},
doi={10.1016/j.cell.2021.05.002},
note={cited By 29},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85106902108&doi=10.1016%2fj.cell.2021.05.002&partnerID=40&md5=aa5710332a3729ab6309b8da676397e7},
document_type={Article},
source={Scopus},
}

@ARTICLE{Moreno-Pino2021,
author={Moreno-Pino, M. and Ugalde, J.A. and Valdés, J.H. and Rodríguez-Marconi, S. and Parada-Pozo, G. and Trefault, N.},
title={Bacteria Isolated From the Antarctic Sponge Iophon sp. Reveals Mechanisms of Symbiosis in Sporosarcina, Cellulophaga, and Nesterenkonia},
journal={Frontiers in Microbiology},
year={2021},
volume={12},
doi={10.3389/fmicb.2021.660779},
art_number={660779},
note={cited By 2},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85108517588&doi=10.3389%2ffmicb.2021.660779&partnerID=40&md5=0d8bd25201684fcac4ae81437b35ec2f},
document_type={Article},
source={Scopus},
}

@ARTICLE{Encinas2021,
author={Encinas, F. and Soto-Liebe, K. and Aguirre-Nuñez, C. and González, B. and Bustamante, W. and Schueftan, A. and Ugalde, J. and Blondel, C. and Truffello, R. and Araya, P. and Freed, C.},
title={Covid-19 and city: Towards an integrated model of housing, microbiology, environment and urbanism [COVID-19 y ciudad: Hacia un modelo integrado de vivienda, microbiología, ambiente y urbanismo]},
journal={Architecture, City and Environment},
year={2021},
volume={16},
number={46},
doi={10.5821/ace.16.46.9645},
art_number={9645},
note={cited By 0},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85111912363&doi=10.5821%2face.16.46.9645&partnerID=40&md5=ccc37746c5c69bcf53867253f64548c4},
document_type={Article},
source={Scopus},
}

@ARTICLE{Valencia2021,
author={Valencia, R. and González, V. and Undabarrena, A. and Zamora-Leiva, L. and Ugalde, J.A. and Cámara, B.},
title={An integrative bioinformatic analysis for keratinase detection in marine-derived streptomyces},
journal={Marine Drugs},
year={2021},
volume={19},
number={6},
doi={10.3390/md19060286},
art_number={286},
note={cited By 1},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85107344754&doi=10.3390%2fmd19060286&partnerID=40&md5=98fba2c707c57c939c2eb09c3baed448},
document_type={Article},
source={Scopus},
}

@ARTICLE{Peoples2020,
author={Peoples, L.M. and Kyaw, T.S. and Ugalde, J.A. and Mullane, K.K. and Chastain, R.A. and Yayanos, A.A. and Kusube, M. and Methé, B.A. and Bartlett, D.H.},
title={Distinctive gene and protein characteristics of extremely piezophilic Colwellia},
journal={BMC Genomics},
year={2020},
volume={21},
number={1},
doi={10.1186/s12864-020-07102-y},
art_number={692},
note={cited By 9},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85092350534&doi=10.1186%2fs12864-020-07102-y&partnerID=40&md5=7914df55348a6a5a234d1880566e0aed},
document_type={Article},
source={Scopus},
}

@ARTICLE{Chng2020941,
author={Chng, K.R. and Li, C. and Bertrand, D. and Ng, A.H.Q. and Kwah, J.S. and Low, H.M. and Tong, C. and Natrajan, M. and Zhang, M.H. and Xu, L. and Ko, K.K.K. and Ho, E.X.P. and Av-Shalom, T.V. and Teo, J.W.P. and Khor, C.C. and Chen, S.L. and Mason, C.E. and Ng, O.T. and Marimuthu, K. and Ang, B. and Nagarajan, N. and Danko, D. and Bezdan, D. and Afshinnekoo, E. and Ahsanuddin, S. and Bhattacharya, C. and Butler, D.J. and De Filippis, F. and Hecht, J. and Kahles, A. and Karasikov, M. and Kyrpides, N.C. and Leung, M.H.Y. and Meleshko, D. and Mustafa, H. and Mutai, B. and Neches, R.Y. and Ng, A. and Nieto-Caballero, M. and Nikolayeva, O. and Nikolayeva, T. and Png, E. and Sanchez, J.L. and Shaaban, H. and Sierra, M.A. and Tong, X. and Young, B. and Alicea, J. and Bhattacharyya, M. and Blekhman, R. and Castro-Nallar, E. and Cañas, A.M. and Chatziefthimiou, A.D. and Crawford, R.W. and Deng, Y. and Desnues, C. and Dias-Neto, E. and Donnellan, D. and Dybwad, M. and Elhaik, E. and Ercolini, D. and Frolova, A. and Graf, A.B. and Green, D.C. and Hajirasouliha, I. and Hernandez, M. and Iraola, G. and Jang, S. and Jones, A. and Kelly, F.J. and Knights, K. and Labaj, P.P. and Lee, P.K.H. and Shawn, L. and Ljungdahl, P. and Lyons, A. and Mason-Buck, G. and McGrath, K. and Mongodin, E.F. and Moraes, M.O. and Noushmehr, H. and Oliveira, M. and Ossowski, S. and Osuolale, O.O. and Özcan, O. and Paez-Espino, D. and Rascovan, N. and Richard, H. and Rätsch, G. and Schriml, L.M. and Semmler, T. and Sezerman, O.U. and Shi, L. and Song, L.H. and Suzuki, H. and Court, D.S. and Thomas, D. and Tighe, S.W. and Udekwu, K.I. and Ugalde, J.A. and Valentine, B. and Vassilev, D.I. and Vayndorf, E. and Velavan, T.P. and Zambrano, M.M. and Zhu, J. and Zhu, S.},
title={Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment},
journal={Nature Medicine},
year={2020},
volume={26},
number={6},
pages={941-951},
doi={10.1038/s41591-020-0894-4},
note={cited By 42},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85086157299&doi=10.1038%2fs41591-020-0894-4&partnerID=40&md5=fe735467fad1814dc1d9435943b1b7f8},
document_type={Article},
source={Scopus},
}

@ARTICLE{Ortiz2020,
author={Ortiz, R.L. and Melis-Arcos, F. and Covarrubias, P.C. and Ugalde, J.A. and Apte, Z.S. and Pérez-Donoso, J. and Cárdenas, J.P. and Almonacid, D.E.},
title={Draft Genome Sequence of Blautia luti DSM 14534T, Isolated from Human Stool},
journal={Microbiology Resource Announcements},
year={2020},
volume={9},
number={19},
doi={10.1128/MRA.00088-20},
art_number={e00088-20},
note={cited By 0},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85086224681&doi=10.1128%2fMRA.00088-20&partnerID=40&md5=a15940fc8cc5ca1641c3739cf6110f84},
document_type={Article},
source={Scopus},
}

@ARTICLE{Urrutia2020,
author={Urrutia, A. and García-Angulo, V. and Fuentes, A. and Caneo, M. and Legüe, M. and Urquiza, S. and Delgado, S.E. and Ugalde, J. and Burdisso, P. and Calixto, A.},
title={Bacterially produced metabolites protect C. elegans neurons from degeneration},
journal={PLoS Biology},
year={2020},
volume={18},
number={3},
doi={10.1371/journal.pbio.3000638},
art_number={e3000638},
note={cited By 17},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85082267028&doi=10.1371%2fjournal.pbio.3000638&partnerID=40&md5=657c720b90e7fc07d247f7131d239085},
document_type={Article},
source={Scopus},
}

@ARTICLE{Araos2019,
author={Araos, R. and Battaglia, T. and Ugalde, J.A. and Rojas-Herrera, M. and Blaser, M.J. and D’agata, E.M.C.},
title={Fecal microbiome characteristics and the resistome associated with acquisition of multidrug-resistant organisms among elderly subjects},
journal={Frontiers in Microbiology},
year={2019},
volume={10},
number={SEP},
doi={10.3389/fmicb.2019.02260},
art_number={2260},
note={cited By 6},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85073165599&doi=10.3389%2ffmicb.2019.02260&partnerID=40&md5=052c88a562df7947dde94eb9cc814fb9},
document_type={Article},
source={Scopus},
}

@ARTICLE{Bik2019,
author={Bik, E.M. and Bird, S.W. and Bustamante, J.P. and Leon, L.E. and Nieto, P.A. and Addae, K. and Alegría-Mera, V. and Bravo, C. and Bravo, D. and Cardenas, J.P. and Carson, G.A. and Caughey, A. and Covarrubias, P.C. and Pérez-Donoso, J. and Gass, G. and Gupta, S.L. and Harman, K. and Hongo, D.M.B. and Jiménez, J.C. and Kraal, L. and Melis-Arcos, F. and Morales, E.H. and Morton, A. and Navas, C.F. and Nuñez, H. and Olivares, E. and Órdenes-Aenishanslins, N. and Ossandon, F.J. and Phan, R. and Pino, R. and Soto-Liebe, K. and Varas, I. and Vera-Wolf, P. and Walton, N.A. and Almonacid, D.E. and Goddard, A.D. and Ugalde, J.A. and Zneimer, S. and Richman, J. and Apte, Z.S.},
title={A novel sequencing-based vaginal health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis},
journal={PLoS ONE},
year={2019},
volume={14},
number={5},
doi={10.1371/journal.pone.0215945},
art_number={e0215945},
note={cited By 5},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85065539679&doi=10.1371%2fjournal.pone.0215945&partnerID=40&md5=67898b709ea56df0339d7c96036082be},
document_type={Article},
source={Scopus},
}

@ARTICLE{Bik20184404,
author={Bik, E.M. and Ugalde, J.A. and Cousins, J. and Goddard, A.D. and Richman, J. and Apte, Z.S.},
title={Microbial biotransformations in the human distal gut},
journal={British Journal of Pharmacology},
year={2018},
volume={175},
number={24},
pages={4404-4414},
doi={10.1111/bph.14085},
note={cited By 25},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85038865404&doi=10.1111%2fbph.14085&partnerID=40&md5=731623eb9b4be85ce382c52bc8f930f6},
document_type={Review},
source={Scopus},
}

@ARTICLE{Plominsky2018,
author={Plominsky, A.M. and Henríquez-Castillo, C. and Delherbe, N. and Podell, S. and Ramirez-Flandes, S. and Ugalde, J.A. and Santibañez, J.F. and van den Engh, G. and Hanselmann, K. and Ulloa, O. and De la Iglesia, R. and Allen, E.E. and Trefault, N.},
title={Distinctive archaeal composition of an artisanal crystallizer pond and functional insights into salt-saturated hypersaline environment adaptation},
journal={Frontiers in Microbiology},
year={2018},
volume={9},
number={AUG},
doi={10.3389/fmicb.2018.01800},
art_number={1800},
note={cited By 10},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85051564482&doi=10.3389%2ffmicb.2018.01800&partnerID=40&md5=9b4b66eb26838fcde8ee0a82e74d8bf8},
document_type={Article},
source={Scopus},
}

@ARTICLE{Undabarrena201813,
author={Undabarrena, A. and Salvà-Serra, F. and Jaén-Luchoro, D. and Castro-Nallar, E. and Mendez, K.N. and Valencia, R. and Ugalde, J.A. and Moore, E.R.B. and Seeger, M. and Cámara, B.},
title={Complete genome sequence of the marine Rhodococcus sp. H-CA8f isolated from Comau fjord in Northern Patagonia, Chile},
journal={Marine Genomics},
year={2018},
volume={40},
pages={13-17},
doi={10.1016/j.margen.2018.01.004},
note={cited By 4},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85041907604&doi=10.1016%2fj.margen.2018.01.004&partnerID=40&md5=b0e24a09a2dd2cc446bbd7c9c4c9450e},
document_type={Article},
source={Scopus},
}

@ARTICLE{Araos20181525,
author={Araos, R. and Andreatos, N. and Ugalde, J. and Mitchell, S. and Mylonakis, E. and D’Agata, E.M.C.},
title={Fecal Microbiome Among Nursing Home Residents with Advanced Dementia and Clostridium difficile},
journal={Digestive Diseases and Sciences},
year={2018},
volume={63},
number={6},
pages={1525-1531},
doi={10.1007/s10620-018-5030-7},
note={cited By 16},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85044444834&doi=10.1007%2fs10620-018-5030-7&partnerID=40&md5=ab4fb4865e63bd70ee1b67ae420bfb2e},
document_type={Article},
source={Scopus},
}

@ARTICLE{Millán-Aguinãga2017,
author={Millán-Aguinãga, N. and Chavarria, K.L. and Ugalde, J.A. and Letzel, A.-C. and Rouse, G.W. and Jensen, P.R.},
title={Phylogenomic Insight into Salinispora (Bacteria, Actinobacteria) Species Designations},
journal={Scientific Reports},
year={2017},
volume={7},
number={1},
doi={10.1038/s41598-017-02845-3},
art_number={3564},
note={cited By 15},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85020907330&doi=10.1038%2fs41598-017-02845-3&partnerID=40&md5=29a93efda3eb7a7081cfbb3eea3d7468},
document_type={Article},
source={Scopus},
}

@ARTICLE{Araos20171312,
author={Araos, R. and Montgomery, V. and Ugalde, J.A. and Snyder, G.M. and D'Agata, E.M.C.},
title={Microbial Disruption Indices to Detect Colonization with Multidrug-Resistant Organisms},
journal={Infection Control and Hospital Epidemiology},
year={2017},
volume={38},
number={11},
pages={1312-1318},
doi={10.1017/ice.2017.190},
note={cited By 6},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85030863315&doi=10.1017%2fice.2017.190&partnerID=40&md5=fbe3dda8f2f2f962a160baec57f4057d},
document_type={Conference Paper},
source={Scopus},
}

@ARTICLE{Fujio-Vejar2017,
author={Fujio-Vejar, S. and Vasquez, Y. and Morales, P. and Magne, F. and Vera-Wolf, P. and Ugalde, J.A. and Navarrete, P. and Gotteland, M.},
title={The gut microbiota of healthy Chilean subjects reveals a high abundance of the phylum Verrucomicrobia},
journal={Frontiers in Microbiology},
year={2017},
volume={8},
number={JUN},
doi={10.3389/fmicb.2017.01221},
art_number={1221},
note={cited By 117},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85021771753&doi=10.3389%2ffmicb.2017.01221&partnerID=40&md5=0c18b9164fd3a277f4364bf53e674e39},
document_type={Article},
source={Scopus},
}

@ARTICLE{Undabarrena2017a,
author={Undabarrena, A. and Ugalde, J.A. and Seeger, M. and Cámara, B.},
title={Genomic data mining of the marine actinobacteria Streptomyces sp. H-KF8 unveils insights into multi-stress related genes and metabolic pathways involved in antimicrobial synthesis},
journal={PeerJ},
year={2017},
volume={2017},
number={2},
doi={10.7717/peerj.2912},
art_number={e2912},
note={cited By 25},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85013216704&doi=10.7717%2fpeerj.2912&partnerID=40&md5=b688f0286d990d727611ccff47ed4453},
document_type={Article},
source={Scopus},
}

@ARTICLE{Undabarrena2017,
author={Undabarrena, A. and Ugalde, J.A. and Castro-Nallar, E. and Seeger, M. and Cámara, B.},
title={Genome sequence of streptomyces sp. H-KF8, a marine actinobacterium isolated from a northern chilean patagonian fjord},
journal={Genome Announcements},
year={2017},
volume={5},
number={6},
doi={10.1128/genomeA.01645-16},
art_number={e01645-16},
note={cited By 3},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85012875542&doi=10.1128%2fgenomeA.01645-16&partnerID=40&md5=2ea9ecce6cbf94838ae4c9b369cc652c},
document_type={Article},
source={Scopus},
}

@ARTICLE{Morales2016,
author={Morales, P. and Fujio, S. and Navarrete, P. and Ugalde, J.A. and Magne, F. and Carrasco-Pozo, C. and Tralma, K. and Quezada, M. and Hurtado, C. and Covarrubias, N. and Brignardello, J. and Henriquez, D. and Gotteland, M.},
title={Impact of Dietary Lipids on Colonic Function and Microbiota: An Experimental Approach Involving Orlistat-Induced Fat Malabsorption in Human Volunteers},
journal={Clinical and Translational Gastroenterology},
year={2016},
volume={7},
doi={10.1038/ctg.2016.16},
art_number={e161},
note={cited By 41},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84963569135&doi=10.1038%2fctg.2016.16&partnerID=40&md5=e28e07ae6a16ecabb826340bf97e1f18},
document_type={Article},
source={Scopus},
}

@ARTICLE{Asenjo2016,
author={Asenjo, F. and Olmos, A. and Henríquez-Piskulich, P. and Polanco, V. and Aldea, P. and Ugalde, J.A. and Trombert, A.N.},
title={Genome sequencing and analysis of the first complete genome of Lactobacillus kunkeei strain MP2, an Apis mellifera gut isolate},
journal={PeerJ},
year={2016},
volume={2016},
number={4},
doi={10.7717/peerj.1950},
art_number={e1950},
note={cited By 12},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84966397430&doi=10.7717%2fpeerj.1950&partnerID=40&md5=e68317b60f3234549bc0fe696043b8aa},
document_type={Article},
source={Scopus},
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@ARTICLE{Tang20152841,
author={Tang, X. and Li, J. and Millán-Aguiñaga, N. and Zhang, J.J. and O'Neill, E.C. and Ugalde, J.A. and Jensen, P.R. and Mantovani, S.M. and Moore, B.S.},
title={Identification of Thiotetronic Acid Antibiotic Biosynthetic Pathways by Target-directed Genome Mining},
journal={ACS Chemical Biology},
year={2015},
volume={10},
number={12},
pages={2841-2849},
doi={10.1021/acschembio.5b00658},
note={cited By 157},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84952008952&doi=10.1021%2facschembio.5b00658&partnerID=40&md5=5f44bfc1c6eaa435fd973f003ca9c2ae},
document_type={Article},
source={Scopus},
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@ARTICLE{Martin2015223,
author={Martin, L.J. and Adams, R.I. and Bateman, A. and Bik, H.M. and Hawks, J. and Hird, S.M. and Hughes, D. and Kembel, S.W. and Kinney, K. and Kolokotronis, S.-O. and Levy, G. and McClain, C. and Meadow, J.F. and Medina, R.F. and Mhuireach, G. and Moreau, C.S. and Munshi-South, J. and Nichols, L.M. and Palmer, C. and Popova, L. and Schal, C. and Täubel, M. and Trautwein, M. and Ugalde, J.A. and Dunn, R.R.},
title={Evolution of the indoor biome},
journal={Trends in Ecology and Evolution},
year={2015},
volume={30},
number={4},
pages={223-232},
doi={10.1016/j.tree.2015.02.001},
note={cited By 57},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84925586479&doi=10.1016%2fj.tree.2015.02.001&partnerID=40&md5=82c6d3fad3fd0047dbe4b5d2185ff0c9},
document_type={Review},
source={Scopus},
}

@ARTICLE{Rojas2015,
author={Rojas, R. and Miranda, C.D. and Romero, J. and Asenjo, F. and Valderrama, K. and Segovia, C. and Ugalde, J.A. and Santander, J.},
title={Genome sequence of Vibrio VPAP30, isolated from an episode of massive mortality of reared larvae of scallop Argopecten purpuratus},
journal={Genome Announcements},
year={2015},
volume={3},
number={4},
doi={10.1128/genomeA.00745-15},
art_number={e00745-15},
note={cited By 4},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85008474037&doi=10.1128%2fgenomeA.00745-15&partnerID=40&md5=89a4a8642a875c6ed6fdd05115737b49},
document_type={Article},
source={Scopus},
}

@ARTICLE{Malfatti20141173,
author={Malfatti, F. and Turk, V. and Tinta, T. and Mozetič, P. and Manganelli, M. and Samo, T.J. and Ugalde, J.A. and Kovač, N. and Stefanelli, M. and Antonioli, M. and Fonda-Umani, S. and Del Negro, P. and Cataletto, B. and Hozić, A. and Ivošević DeNardis, N. and Žutić, V. and Svetličić, V. and Mišić Radić, T. and Radić, T. and Fuks, D. and Azam, F.},
title={Microbial mechanisms coupling carbon and phosphorus cycles in phosphorus-limited northern Adriatic Sea},
journal={Science of the Total Environment},
year={2014},
volume={470-471},
pages={1173-1183},
doi={10.1016/j.scitotenv.2013.10.040},
note={cited By 11},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84887704068&doi=10.1016%2fj.scitotenv.2013.10.040&partnerID=40&md5=03e881222fac631367fa88010b6e5374},
document_type={Article},
source={Scopus},
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@ARTICLE{Plominsky2014,
author={Plominsky, A.M. and Delherbe, N. and Ugalde, J.A. and Allen, E.E. and Blanchet, M. and Ikeda, P. and Santibañez, F. and Hanselmann, K. and Ulloa, O. and De la Iglesia, R. and von Dassow, P. and Astorga, M. and Gálvez, M.J. and González, M.L. and Henríquez-Castillo, C. and Vaulot, D. and do Santos, A.L. and van den Engh, G. and Gimpel, C. and Bertoglio, F. and Delgado, Y. and Docmac, F. and Elizondo-Patrone, C. and Narváez, S. and Sorroche, F. and Rojas-Herrera, M. and Trefault, N.},
title={Metagenome sequencing of the microbial community of a solar saltern crystallizer pond at Cáhuil Lagoon, Chile},
journal={Genome Announcements},
year={2014},
volume={2},
number={6},
doi={10.1128/genomeA.01172-14},
art_number={e01172-14},
note={cited By 8},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85006054516&doi=10.1128%2fgenomeA.01172-14&partnerID=40&md5=611040a076242969de8ec57a98b2c1a6},
document_type={Article},
source={Scopus},
}

@ARTICLE{Valenzuela2014,
author={Valenzuela, C. and Ugalde, J.A. and Mora, G.C. and Álvarez, S. and Contreras, I. and Santiviago, C.A.},
title={Draft Genome Sequence of Salmonella enterica Serovar Typhi Strain STH2370},
journal={Genome Announcements},
year={2014},
volume={2},
number={1},
doi={10.1128/genomeA.e00104-14},
art_number={e00104-14},
note={cited By 11},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84999007048&doi=10.1128%2fgenomeA.e00104-14&partnerID=40&md5=440c976ef2e00744f5560a77f939953a},
document_type={Article},
source={Scopus},
}

@ARTICLE{Podell2014979,
author={Podell, S. and Emerson, J.B. and Jones, C.M. and Ugalde, J.A. and Welch, S. and Heidelberg, K.B. and Banfield, J.F. and Allen, E.E.},
title={Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community},
journal={ISME Journal},
year={2014},
volume={8},
number={5},
pages={979-990},
doi={10.1038/ismej.2013.221},
note={cited By 55},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84899487999&doi=10.1038%2fismej.2013.221&partnerID=40&md5=661e0e9a8dae7770476fa1bfa0aed720},
document_type={Article},
source={Scopus},
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@ARTICLE{Kharbush20143283,
author={Kharbush, J.J. and Ugalde, J.A. and Hogle, S.L. and Allen, E.E. and Aluwihare, L.I.},
title={Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California current},
journal={Applied and Environmental Microbiology},
year={2014},
volume={80},
number={10},
pages={3283},
doi={10.1128/AEM.00847-14},
note={cited By 0},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84899071954&doi=10.1128%2fAEM.00847-14&partnerID=40&md5=00e8f77b6df291e561fbfceff7e2c030},
document_type={Erratum},
source={Scopus},
}

@ARTICLE{Kharbush20137491,
author={Kharbush, J.J. and Ugalde, J.A. and Hogle, S.L. and Allen, E.E. and Aluwihare, L.I.},
title={Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California current},
journal={Applied and Environmental Microbiology},
year={2013},
volume={79},
number={23},
pages={7491-7501},
doi={10.1128/AEM.02367-13},
note={cited By 24},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84888218013&doi=10.1128%2fAEM.02367-13&partnerID=40&md5=3de30cf7368abe7fe11236a33d6ae755},
document_type={Article},
source={Scopus},
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@ARTICLE{Ugalde2013a,
author={Ugalde, J.A. and Gallardo, M.J. and Belmar, C. and Muñoz, P. and Ruiz-Tagle, N. and Ferrada-Fuentes, S. and Espinoza, C. and Allen, E.E. and Gallardo, V.A.},
title={Microbial Life in a Fjord: Metagenomic Analysis of a Microbial Mat in Chilean Patagonia},
journal={PLoS ONE},
year={2013},
volume={8},
number={8},
doi={10.1371/journal.pone.0071952},
art_number={e71952},
note={cited By 14},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84883137972&doi=10.1371%2fjournal.pone.0071952&partnerID=40&md5=7cb9e77a540a6c150f548145a40367db},
document_type={Article},
source={Scopus},
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@ARTICLE{Podell2013,
author={Podell, S. and Ugalde, J.A. and Narasingarao, P. and Banfield, J.F. and Heidelberg, K.B. and Allen, E.E.},
title={Assembly-Driven Community Genomics of a Hypersaline Microbial Ecosystem},
journal={PLoS ONE},
year={2013},
volume={8},
number={4},
doi={10.1371/journal.pone.0061692},
art_number={e61692},
note={cited By 67},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84876310485&doi=10.1371%2fjournal.pone.0061692&partnerID=40&md5=d3b91383eaee3a9d1a66f2164fb61e3a},
document_type={Article},
source={Scopus},
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@ARTICLE{Ugalde2013,
author={Ugalde, J.A. and Narasingarao, P. and Kuo, S. and Podell, S. and Allen, E.E.},
title={Draft genome sequence of "Candidatus Halobonum tyrrellensis" strain G22, isolated from the hypersaline waters of Lake Tyrrell, Australia},
journal={Genome Announcements},
year={2013},
volume={1},
number={6},
doi={10.1128/genomeA.01001-13},
art_number={e01001-13},
note={cited By 4},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84999791354&doi=10.1128%2fgenomeA.01001-13&partnerID=40&md5=0862c415757c075a4b7f58458353c9a4},
document_type={Article},
source={Scopus},
}

@ARTICLE{Narasingarao201281,
author={Narasingarao, P. and Podell, S. and Ugalde, J.A. and Brochier-Armanet, C. and Emerson, J.B. and Brocks, J.J. and Heidelberg, K.B. and Banfield, J.F. and Allen, E.E.},
title={De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities},
journal={ISME Journal},
year={2012},
volume={6},
number={1},
pages={81-93},
doi={10.1038/ismej.2011.78},
note={cited By 227},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84355162254&doi=10.1038%2fismej.2011.78&partnerID=40&md5=259cc6f5a7b0bc38595b82b3fab8e4b6},
document_type={Article},
source={Scopus},
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@ARTICLE{Ugalde2011,
author={Ugalde, J.A. and Podell, S. and Narasingarao, P. and Allen, E.E.},
title={Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria},
journal={Biology Direct},
year={2011},
volume={6},
doi={10.1186/1745-6150-6-52},
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source={Scopus},
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