setup.py

import setuptools

with open("README.md", "r") as fh:
    long_description = fh.read()

setuptools.setup(
    name="airpg",
    version="1.1.7",
    author="Michael Gruenstaeudl, Tilman Mehl",
    author_email="m_gruenstaeudl@fhsu.edu, tilmanmehl@zedat.fu-berlin.de",
    description="A package to automatically access the inverted repeats of archived plastid genomes",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url='https://github.com/michaelgruenstaeudl/airpg',
    #download_url='https://github.com/michaelgruenstaeudl/airpg/archive/v1.1.7.tar.gz',
    classifiers=[
        'Development Status :: 4 - Beta',
        'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
        "Programming Language :: Python :: 3",
        "Operating System :: POSIX",
        'Intended Audience :: Science/Research',
        'Topic :: Scientific/Engineering :: Bio-Informatics'
        ],
    python_requires='>=3.6',
    keywords='plastid genomes, inverted repeats, NCBI Nucleotide',
    license='GPLv3',
    #packages=['airpg'], # So that the subfolder 'airpg' is read immediately.
    packages = setuptools.find_packages(),
    #entry_points={
    #  "console_scripts": ["airpg-identify=airpg.scripts.airpg_identify", "airpg-analyze=airpg.scripts.airpg_analyze", "airpg-confirm=airpg.scripts.airpg_confirm", "airpg-update-blocklist=airpg.scripts.airpg_update_blocklist"]
    #},
    install_requires=['biopython', 'ete3', 'entrezpy', 'pandas', 'fuzzywuzzy', 'coloredlogs', 'python-Levenshtein'],
    scripts=['airpg/scripts/airpg_identify.py', 'airpg/scripts/airpg_analyze.py', 'airpg/scripts/airpg_confirm.py', 'airpg/scripts/airpg_update_blocklist.py'],
    test_suite='setup.my_test_suite',
    include_package_data=True,
    package_data={'': ['airpg/tutorials/*.md']},
    zip_safe=False
)