From 150fefbf94500d716507541303eaad6fff7d9a0d Mon Sep 17 00:00:00 2001
From: Micael Verissimo de Araujo <micael.verissimo@lps.ufrj.br>
Date: Sun, 4 Oct 2020 14:16:50 -0300
Subject: [PATCH] update in order to tranform in pip like module

---
 bregman_clustering/__init__.py                |  7 ++++
 bregman_clustering/python/__init__.py         |  5 +++
 .../python}/cluster_algorithms.py             |  5 +++
 python/__init__.py                            |  1 -
 scripts/setup.sh                              |  6 ---
 setup.py                                      | 39 +++++++++++++++++++
 setup_workspace.py                            |  4 --
 upload.sh                                     |  3 ++
 8 files changed, 59 insertions(+), 11 deletions(-)
 create mode 100644 bregman_clustering/__init__.py
 create mode 100644 bregman_clustering/python/__init__.py
 rename {python => bregman_clustering/python}/cluster_algorithms.py (98%)
 delete mode 100644 python/__init__.py
 delete mode 100644 scripts/setup.sh
 create mode 100644 setup.py
 delete mode 100644 setup_workspace.py
 create mode 100644 upload.sh

diff --git a/bregman_clustering/__init__.py b/bregman_clustering/__init__.py
new file mode 100644
index 0000000..66d40e9
--- /dev/null
+++ b/bregman_clustering/__init__.py
@@ -0,0 +1,7 @@
+__name__ = "bregman_clustering"
+
+__all__ = []
+
+from . import python
+__all__.extend(python.__all__)
+from .python import *
\ No newline at end of file
diff --git a/bregman_clustering/python/__init__.py b/bregman_clustering/python/__init__.py
new file mode 100644
index 0000000..67b9535
--- /dev/null
+++ b/bregman_clustering/python/__init__.py
@@ -0,0 +1,5 @@
+__all__ = []
+
+from . import cluster_algorithms
+__all__.extend( cluster_algorithms.__all__ )
+from .cluster_algorithms import *
\ No newline at end of file
diff --git a/python/cluster_algorithms.py b/bregman_clustering/python/cluster_algorithms.py
similarity index 98%
rename from python/cluster_algorithms.py
rename to bregman_clustering/python/cluster_algorithms.py
index ae62657..a3add28 100644
--- a/python/cluster_algorithms.py
+++ b/bregman_clustering/python/cluster_algorithms.py
@@ -1,3 +1,7 @@
+__all__ = [
+    'base_kmeans',
+]
+
 import numpy as np
 from scipy.spatial import distance
 import matplotlib.pyplot as plt
@@ -97,6 +101,7 @@ def fit(self, X_data, breg_div='euclidean', n_iter=10, tol=1e-3, debug=False):
                 # Jut to log the number of iteractions
                 self.last_iter = i_iter+1
                 print('The conversion criteria was reached... Stopping!')
+                print(self.sum_total_div)
                 break
             else:
                 self.centroids = new_centers
diff --git a/python/__init__.py b/python/__init__.py
deleted file mode 100644
index 33fe67d..0000000
--- a/python/__init__.py
+++ /dev/null
@@ -1 +0,0 @@
-from cluster_algorithms import *
\ No newline at end of file
diff --git a/scripts/setup.sh b/scripts/setup.sh
deleted file mode 100644
index 013023b..0000000
--- a/scripts/setup.sh
+++ /dev/null
@@ -1,6 +0,0 @@
-
-export PYTHONPATH=$PYTHONPATH:$PWD'/python'
-
-echo
-echo "Now is everything all right"
-echo 
\ No newline at end of file
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..cf825ef
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,39 @@
+# Imports
+from setuptools import setup, find_packages
+
+# Loading README file
+with open("README.md", "r") as fh:
+  long_description = fh.read()
+
+setup(
+  name = 'bregmanclustering',
+  version = '0.3',
+  license='GPL-3.0',
+  description = 'A framework to use Bregman Divergence',
+  long_description = long_description,
+  long_description_content_type="text/markdown",
+  packages=find_packages(),
+  author = 'Micael Veríssimo de Araújo',
+  author_email = 'micael.verissimo@lps.ufrj.br',
+  url = 'https://github.com/micaelverissimo/bregmannclustering',
+  keywords = ['framework', 'information-geometry', 'machine-learning', 'ai', 'plotting', 'data-visualization'],
+  install_requires = [
+    'numpy',
+    'six>=1.12.0',
+    'scipy==1.4.1',
+    'future',
+    'sklearn',
+    'scikit-learn>=0.22.1',
+    'matplotlib>=3.1.3',
+    'seaborn>=0.10.0',
+  ],
+  classifiers=[
+    'Development Status :: 4 - Beta',
+    'Intended Audience :: Developers',
+    'Topic :: Software Development :: Libraries :: Python Modules',
+    'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+    'Programming Language :: Python :: 3',
+    'Programming Language :: Python :: 3.6',
+    'Programming Language :: Python :: 3.7',
+  ],
+)
\ No newline at end of file
diff --git a/setup_workspace.py b/setup_workspace.py
deleted file mode 100644
index f9c7786..0000000
--- a/setup_workspace.py
+++ /dev/null
@@ -1,4 +0,0 @@
-import os
-
-os.makedirs('./data_files/')
-os.makedirs('./clustering_plots/')
diff --git a/upload.sh b/upload.sh
new file mode 100644
index 0000000..de7d21d
--- /dev/null
+++ b/upload.sh
@@ -0,0 +1,3 @@
+rm dist/*
+python3 setup.py sdist
+twine upload dist/*
\ No newline at end of file