Study title: "Sponge holobionts shift their prokaryotic communities and antimicrobial activity from shallow to lower mesophotic depths" Authors: Anak Agung Gede Indraningrat, Georg Steinert, Leontine E. Becking, Benjamin Mueller, Jasper de Goeij, Hauke Smidt, Detmer Sipkema
In this repository are all the files and codes used for reproducible data analysis Below is a short descriptions of the files.
#Complete workflow
Curacao_depth gradient.rmd contains -R Markdown file containing all details and analysis scripts used in this study.
#Biom File
DG_final.biom provides 16S rRNA gene amplicon sequencing data, classified to Genus level (SILVA SSU 128 database)
#Mapping File
MappingFile_DG.csv contains metadata for individual samples
#Phyloggenetic tree
DG.tre contains phylogenetic tree information of OTUs.
All questions or comments concerning this analysis can be directed at [email protected]