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HISTORY
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TAG: assemblyseqload-6-0-25-2
TAG: assemblyseqload-6-0-25-1
DATE: 03/12/2025
STAFF: lec
CHANGES:
wts2-1591/e4g-93/ENSEMBL gene 113
# modified: ensembl_assemblyseqload.config
# modified: ensemblreg_assemblyseqload.config
# modified: ensemblreg_assocload.config
TAG: assemblyseqload-6-0-24-3
TAG: assemblyseqload-6-0-24-2
DATE: 10/04/2024
STAFF: lec
CHANGES:
wts2-1543/e4g-17/VISTA load 2024-08
# modified: vistareg_assemblyseqload.config
TAG: assemblyseqload-6-0-24-1
DATE: 07/25/2024
STAFF: lec
CHANGES:
wts2-1425/fl2-935/NCBI annotation release RS_2024_02
# modified: ncbi_assemblyseqload.config
TAG: assemblyseqload-6-0-23-1
DATE: 01/16/2023
STAFF: lec
CHANGES:
wts2-1064/fl2-694/ENSEMBL release 111
# modified: ensembl_assemblyseqload.config
TAG: assemblyseqload-6-0-22-5
DATE: 08/18/2023
STAFF: lec
CHANGES:
wts2-1169/fl2-484/NCBI annotation release RS_2023_04
# modified: ncbi_assemblyseqload.config
TAG: assemblyseqload-6-0-22-4
DATE: 04/26/2023
STAFF: sc
CHANGES:
wts2-1050/Florida Too Project
1. assembly_common.config.default Added SEQ_REPEATS_OK=false
override in ncbi config so NCBI sequences can have same NCBI ID
2. ./ncbi_assemblyseqload.config override: SEQ_REPEATS_OK=true
TAG: assemblyseqload-6-0-22-3
DATE: 02/09/2023
STAFF: sc
CHANGES: ensembl 108 config changes: WTS2-1064
TAG: assemblyseqload-6-0-22-2
DATE: 12/07/2022
STAFF: sc
CHANGES: wts2-813 ENSEMBL 108 Regulatory Elements
TAG: assemblyseqload-6-0-22-1
DATE: 09/22/2022
STAFF: sc
CHANGES:
wts2-943/ENSEMBL 107 genemodel load
TAG: assemblyseqload-6-0-20-1
DATE: 06/21/2022
STAFF: lec
CHANGES:
wts2-876/ENSEMBL 106 gene load
TAG: assemblyseqload-6-0-19-1
DATE: 04/12/2022
STAFF: lec
CHANGES:
wts2-813/cre2022/Regulatory Features Ensembl & VISTA
TAG: assemblyseqload-6-0-17-3
DATE: 12/29/2021
STAFF: lec
CHANGES:
wts2-744/ENSEMBL 105 gene load
TAG: assemblyseqload-6-0-17-2
TAG: assemblyseqload-6-0-17-1
DATE: 03/08/2021
STAFF: sc
CHANGES: TR13349 - Build 39
TAG: assemblyseqload-6-0-16-2
DATE: 10/02/2020
STAFF: lec
CHANGES: TR13389/TR13396/B38 NCBI and Ensembl annotations
TAG: assemblyseqload-6-0-16-1
DATE: 08/21/2020
STAFF: lec
TR13204/Infrastructure Release
TAG: assemblyseqload-6-0-15-1
DATE: 01/31/2020
STAFF: lec
TR13239/Ensembl 99
TAG: assemblyseqload-6-0-14-3
DATE: 10/17/2019
STAFF: lec
TR13175/NCBI 108
TAG: assemblyseqload-6-0-14-2
DATE: 07/25/2019
STAFF: lec
TR13151/Ensembl 97
TAG: assemblyseqload-6-0-14-1
DATE: 05/13/2019
STAFF: lec
TR13085/Ensembl 96
TAG: assemblyseqload-6-0-13-5
DATE: 01/30/2019
STAFF: lec
TR13027/Ensembl 95
TAG: assemblyseqload-6-0-13-4
DATE: 12/21/2018
STAFF: lec
TR12989/Ensembl 94
TAG: assemblyseqload-6-0-13-3
DATE: 11/1/2018
STAFF: lec
TR12950/Ensembl 93
TAG: assemblyseqload-6-0-13-2
DATE: 09/18/2018
STAFF: sc
TR12734/GenFeVah merge
Install - missing DLAINSTALL from MGP
TAG: assemblyseqload-6-0-13-1
DATE: 09/04/2018
STAFF: lec
TR12734/GenFeVah merge
TAG: assemblyseqload-6-0-12-2
DATE: 05/09/2018
STAFF: lec
CHANGES:
1) TR12859/Ensembl 92
TAG: assemblyseqload-tr12734-6
DATE: 06/07/2018
STAFF: sc
CHANGES: TR12734/GF project
1) update mgp_assemblyseqload.config.default:SEQ_RELEASE_NO MGP release number from 91 to 92
TAG: assemblyseqload-tr12734-5
TAG: assemblyseqload-tr12734-4
TAG: assemblyseqload-tr12734-3
DATE: 06/07/2018
STAFF: sc
CHANGES: TR12734/GF project
1) b6_assemblyseqload.config.default - fixed jobstream name b6 to B6
CONFIG_ASSOCLOAD=${ASSEMBLYSEQLOAD}/B6_assocload.config
2) updated SEQ_PROVIDER to specify strain
TAG: assemblyseqload-tr12734-2
DATE: 06/02/2018
STAFF: sc
CHANGES: TR12734/GF project
1) fixed config bugs - B6 JNUM and SEQ_RELEASE_NO
TAG: assemblyseqload-tr12734-1
DATE: 06/01/2018
STAFF: sc
CHANGES: TR12734/GF project
TAG: assemblyseqload-6-0-12-1
DATE: 03/07/2018
STAFF: sc
CHANGES: TR12662 GMC project
1) assemblyseqload.sh - auto-sequencing
TAG: assemblyseqload-6-0-11-2
DATE: 02/12/2018
STAFF: lec
CHANGES:
1) TR12776/Ensembl 91
TAG: assemblyseqload-tr12662-BP
DATE: 02/01/2018
STAFF: sc
CHANGES: GMC project
TAG: assemblyseqload-6-0-11-1
DATE: 10/31/2017
STAFF: lec
CHANGES:
1) TR12660/Ensembl 90
TAG: assemblyseqload-6-0-10-1
DATE: 07/14/2017
STAFF: lec
CHANGES:
1) TR12610/Ensembl 89
TAG: assemblyseqload-6-0-7-1
DATE: 01/05/2017
STAFF: lec
CHANGES:
1) TR12069/obsolete db.setAutoTranslate()
TAG: assemblyseqload-6-0-6-2
DATE: 12/21/2016
STAFF: lec
CHANGES: TR12443/NCBI release 106
1) ncbi_assemblyseqload.config: SEQ_RELEASE_DATE
TAG: assemblyseqload-6-0-6-1
DATE: 10/27/2016
STAFF: lec
CHANGES: TR1212422/VEGA 66/ENSEMBL 86
1) vega_assemblyseqload.config: SEQ_RELEASE_DATE
2) ensembl_assemblyseqload.config : SEQ_RELEASE_DATE
TAG: assemblyseqload-6-0-4-3
TAG: assemblyseqload-6-0-4-2
DATE: 04/29/2016, 07/23/2016
STAFF: lec
CHANGES: TR12354/12382/VEGA 65/Ensembl 85
1) vega_assemblyseqload.config: SEQ_RELEASE_DATE
2) ensembl_assemblyseqload.config : SEQ_RELEASE_DATE
TAG: assemblyseqload-6-0-4-1
DATE: 04/29/2016
STAFF: lec
CHANGES: TR12069/postgres cleanup
1) convert to Git
2) add "db.setAutoTranslate"
TAG: assemblyseqload-6-0-3-2
DATE: 03/21/2016
STAFF: lec
CHANGES:
a) TR12220/ENSEMBL 84/84
TAG: assemblyseqload-6-0-3-1
DATE: 03/03/2016
STAFF: lec
CHANGES:
a) TR12221/VEGA 64
TAG: assemblyseqload-6-0-2-1
TAG: assemblyseqload-tr12070-1
DATE: 12/02/2015
STAFF: lec
CHANGES:
a) TR12070/12116/SEQ_RELEASE_DATE
TAG: assemblyseqload-tr12070-BP
DATE: 11/2/2015
STAFF: lec
CHANGES:
a) branch point tag for TR12070/TR12116/Ensembl 82
TAG: assemblyseqload-6-0-0-1
DATE: 7/23/15
STAFF: pf
CHANGES: postgres conversion release tag
TAG: assemblyseqload-tr11750-MP
DATE: 7/1/15
STAFF: pf
CHANGES: merging tr11750 to trunk
TAG: assemblyseqload-5-2-2-1
DATE: 05/22/2015
STAFF: lec
CHANGE: TR11750
a) assemblyseqload.sh : seqcacheload/seqdescription.csh : obsolete
TAG: assemblyseqload-5-1-9-?
DATE: 10/16/2014
STAFF: lec
CHANGES: TR11683/NCBI 104
a) ncbi_assemblyseqload.config : SEQ_RELEASE_DATA, SEQ_RELEASE_NO
TAG: assemblyseqload-tr11750-1
DATE: 05/22/2015
STAFF: lec
a) assemblyseqload.sh : seqcacheload/seqdescription.csh : obsolete
TAG: assemblyseqload-tr11750-BP
DATE: 04/08/2015
STAFF: kstone
TAG: assemblyseqload-5-2-1-5
TAG: assemblyseqload-5-2-1-4
DATE: 04/02/2015
STAFF: sc
CHANGES: TR11959 NCBI release 105
- SEQ_RELEASE_DATE=2015/02/09
- SEQ_RELEASE_NO="GRCm38.p3"
TAG: assemblyseqload-5-2-1-3
DATE: 01/16/2015
STAFF: sc
CHANGES: TR11890/VEGA 58
a) vega_assemblyseqload.config - updated SEQ_RELEASE_DATE
TAG: assemblyseqload-5-2-1-2
DATE: 12/07/2014
STAFF: sc
CHANGES: TR11872/ENSEMBL 78
a) ensembl_assemblyseqload.config - updated SEQ_RELEASE_DATE
TAG: assemblyseqload-5-2-1-1
DATE: 12/02/2014
STAFF: sc
CHANGES: TR11794/ENSEMBL 76
a) ensembl_assemblyseqload.config - updated SEQ_RELEASE_DATE
>>>>>>> 1.60
TAG: assemblyseqload-5-1-9-1
DATE: 08/11/2014
STAFF: lec
CHANGES: TR11716/VEGA 56
a) vega_ensemblseqload : SEQ_RELEASE_DATA
TAG: assemblyseqload-5-1-6-1
DATE: 01/23/2014
STAFF: lec
CHANGES: TR11555/ensembl 74
TAG: assemblyseqload-5-1-5-2
TAG: assemblyseqload-5-1-5-1
DATE: 12/03/2013
STAFF: lec
CHANGES: TR11528/vega 54
TAG: assemblyseqload-5-1-4-1
DATE: 06/19/2013
STAFF: lec
CHANGES: TR11316/ensembl 72/vega 52
TAG: assemblyseqload-5-1-1-3
TAG: assemblyseqload-5-1-1-2
DATE: 11/20/2012
STAFF: sc
CHANGES: Added visio do I found when cleaning out my home directory
TAG: assemblyseqload-5-1-1-1
DATE: 11/07/2012
STAFF: sc
CHANGES: TR7106 (CFAM) TR10711 (Build 38) final tag
TAG: assemblyseqload-5-0-0-4
DATE: 10/11/2012
STAFF: sc
CHANGES: TR7106 (CFAM) TR10711 (Build 38)
1) Update *assemblyseqload.config:
SEQ_RELEASE_NO="GRCm38"
COORD_VERSION="GRCm38"
TAG: assemblyseqload-5-0-0-3
DATE: 09/17/2012
STAFF: sc
CHANGES: TR7106 (CFAM) TR10711 (Build 38)
1) *assemblyseqload.config:COORD_COLLECTION_ABBREV changes for C4AM - set to display value instead of default which is same value as name
TAG: assemblyseqload-5-0-0-2
TAG: assemblyseqload-5-0-0-1
DATE: 08/31/2012
STAFF: sc
CHANGES: TR7106 (CFAM) TR10711 (Build 38)
1) config changes for build 38
2) SEQ_RELEASE_DATE needs to be in yyyy/mm/dd format
TAG: assemblyseqload-4-4-2-1
DATE: 03/12/2012
STAFF: sc
CHANGES: TR11002/TR11003
1) ensembl_assemblyseqload.config - updated release date for build 66
2) vega_assemblyseqload.config - updated release date for build 46
TAG: assemblyseqload-4-4-1-4
DATE: 12/15/2011
STAFF: sc
CHANGES: TR10921 Ensembl 65
1) ensembl_assemblyseqload.config - updated release date
2) removed MAIL_LOG_CUR setting because there is no curation log to
TAG: assemblyseqload-4-4-1-3
DATE: 09/06/2011
STAFF: lec
CHANGES: TR10812
1) vega_assemblyseqload.config: SEQ_RELEASE_DATE = 2011/08/11
TAG: assemblyseqload-4-4-1-2
DATE: 07/14/2011
STAFF: sc
CHANGES: TR10717 - reload ncbi gene models
1) ncbi_assemblyseqload.config - updated for release 37.2
TAG: assemblyseqload-4-4-1-1
DATE: 03/01/2011
STAFF: dbm
CHANGES:
1) ensembl_assemblyseqload.config - updated for build 61
2) vega_assemblyseqload.config - updated for build 41
TAG: assemblyseqload-4-4-0-1
DATE: 09/09/2010
STAFF: sc
CHANGES: TR10299
1) Config changes for Ensembl release 59
TAG: assemblyseqload-4-3-4-1
DATE: 05/19/2010
STAFF: dbm
CHANGES: shire retirement (TR10039)
1) index.html: change shire to prodwww
TAG: assemblyseqload-4-3-3-1
DATE: 04/15/2010
STAFF: dbm
CHANGES:
1) Config changes for Ensembl release 57
TAG: assemblyseqload-4-3-2-1
DATE: 01/06/2010
STAFF: dbm
CHANGES:
1) Config changes for VEGA update
TAG: assemblyseqload-4-2-1-3
DATE: 12/08/2009
STAFF: sc
CHANGES: TR9774
1) Configuration changes to add 'Gene Model' to the email header
to disambiguate from the loads added to genemodelload for TR9774
and update to email the curation logs
TAG: assemblyseqload-4-2-1-2
DATE: 04/16/2009
STAFF: dbm
CHANGES:
1) Config changes for VEGA 35 update
TAG: assemblyseqload-4-2-1-1
DATE: 03/31/2009
STAFF: dbm
CHANGES:
1) Config changes for Ensembl release 53
TAG: assemblyseqload-4-2-0-2
DATE: 03/12/2009
STAFF: sc
CHANGES: TR7493 - changes won't be used until GTLF release
added COORD_FEATURE_MGITYPE and COORD_FEATURE_MGITYPE
to the following
ncbi_assemblyseqload.config
ensembl_assemblyseqload.config
vega_assemblyseqload.config
TAG: assemblyseqload-4-2-0-1
DATE: 01/14/2009
STAFF: dbm
CHANGES:
1) Config changes for new VEGA release
TAG: assemblyseqload-4-1-2-2
DATE: 10/15/2008
STAFF: dbm
CHANGES:
1) Config changes for new Ensembl release
TAG: assemblyseqload-4-1-2-1
DATE: 10/06/2008
STAFF: dbm
CHANGES:
1) Config changes to work with new genemodelload product
TAG: assemblyseqload-4-1-1-1
DATE: 09/04/2008
STAFF: dbm
CHANGES:
1) Config changes for new VEGA release
TAG: assemblyseqload-4-1-0-1
DATE: 05/30/2008
STAFF: dbm
CHANGES:
1) Merged tr8528 branch to the trunk
TAG: assemblyseqload-tr8528-1
DATE: 05/09/2008
STAFF: dbm
CHANGES:
1) Config file changes for Build 37
TAG: assemblyseqload-tr8528-BP
DATE: 04/25/2008
STAFF: dbm
CHANGES:
1) Branch point tag for Build 37
TAG: assemblyseqload-3-5-3-3
DATE: 06/13/2007
STAFF: sc
CHANGES: TR8356
1) add configuration to run cacheloads with default of false
2) add gene model to gene chromosome consistency check script
TAG: assemblyseqload-3-5-3-2
DATE: 05/16/2007
STAFF: sc
CHANGES: TR8304 ensembl load
1) updated configuration
2) fixed Install script
TAG: assemblyseqload-3-5-3-1
DATE: 05/01/2007
STAFF: sc
CHANGES: TR8191 vega load
TAG: assemblyseqload-3-5-1-4
DATE: 10/24/2006
STAFF: lec
CHANGES: merge tr7894 branch
TAG: assemblyseqload-tr7894-4
DATE: 10/16/2006
STAFF: sc
CHANGES: Added assoc load config files
TAG: assemblyseqload-tr7894-3
TAG: assemblyseqload-tr7894-2
DATE: 10/06/2006
STAFF: sc
CHANGES:
1) updated to use assocload (rather than genaccload)
2) removed genaccload.sh and replaced with run_assocload.sh
3) added vega, ensembl, ncbi assocload config files
4) added creation of the three sets of assocload output directories
5) *_assemblyseqload.config - added ASSOCFILE, CONFIG_ASSOCLOAD, ASSOCLOADER_SH
TAG: assemblyseqload-3-5-1-3
TAG: assemblyseqload-3-5-1-2
DATE: 09/22/2006
STAFF: lec
1) build 36; merge
TAG: assemblyseqload-tr7894-1
DATE: 09/13/2006
STAFF: sc
CHANGES:
1) updated to use mgiconfig product
TAG: assemblyseqload-tr7894-BP
DATE: 09/12/2006
STAFF: sc
CHANGES: branch point tag for tr7894, mgiconfig update
TAG: assemblyseqload-3-5-1-1
DATE: 09/06/2006
STAFF: lec
1) build 36; merge
TAG: assemblyseqload-build36-2
DATE: 08/17/2006
STAFF: lec
1) build 36
TAG: assemblyseqload-build36-1
DATE: 07/27/2006
STAFF: lec
1) build 36
TAG: assemblyseqload-build36-BP
DATE: 07/19/2006
STAFF: lec
1) branch point tag for build 36
TAG: assemblyseqload-1-0-9
DATE: 12-06-2004
STAFF: sc
RELEASE: dev 3.1
CHANGES: tr6336
1) assemblyseqloadcron.sh - added sourcing of common.config.sh because of
factoring out USRLOCALMGI
2) assemblyseqloadcron.sh - added call to seqcacheload seqdescription.csh
3) assemblyseqloadcron.sh - added checking STAT of each script run.
4) assembly_common.config.default - added SEQ_MARKER_DESCRIPT_CACHELOAD
TAG: assemblyseqload-1-0-8
DATE: 11-22-2004
STAFF: sc
RELEASE: dev 3.1
CHANGES: tr6336
1) assembly_common.config.default - added two forgotten USRLOCALMGI
TAG: assemblyseqload-1-0-7
DATE: 11-19-2004
STAFF: sc
RELEASE: dev 3.1
CHANGES: tr6336
1) assembly_common.config.default - new common config vars
TAG: assemblyseqload-1-0-6
DATE: 11-17-2004
STAFF: sc
RELEASE: dev 3.1
CHANGES: TR6047 dla refactoring
1) *.config.defaults - updated with new class package paths
2) assemblyseqloadcron.sh - commented out call to load ncbi as will not be
a part of release
TAG: assemblyseqload-1-0-5
DATE: 11/04/2004
STAFF: sc
RELEASE: alpha build 3.1
CHANGES: more updates to config defaults
TAG: assemblyseqload-1-0-4
DATE: 11/04/2004
STAFF: sc
RELEASE: alpha build
CHANGES:
1) assembly_common.config.default and ensembl_assemblyseqload.config.default -
changed some default values
TAG: assemblyseqload-1-0-3
DATE: 10/22/2004
STAFF: sc
RELEASE: dev build
CHANGES:
1) ensemb and ncbi config.defaults - changed name of interpreter
(I renamed the class)
TAG: assemblyseqload-1-0-2
DATE: 10/19/2004
STAFF: sc
RELEASE: dev build
CHANGES:
1) assembly_common.config.defaults replaced all BCP_Inline_Stream configuration
with BCP_STREAM
TAG: assemblyseqload-1-0-1
DATE: 10/19/2004
STAFF: sc
RELEASE: dev build
CHANGES:
TAG: assemblyseqload-1-0-0
DATE: 07/27/2004
STAFF: sc
RELEASE:
CHANGES: TR5395 initial tag