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Then I changed it to --min-fraction 10. There was no error but no clustering happened. I switched to dRep using similar parameters and the clusters were formed.
So there seems to be a small bug in the flag --min-fraction.
The text was updated successfully, but these errors were encountered:
Short description of the problem
anvi-dereplicate-genomes
raises an error when giving a float to--min-fraction
anvi'o version
System info
Run within anvio conda environment on an HPC system using rhel
Detailed description of the issue
anvi-dereplicate-genomes -i selected_bins.txt -o anvi-out --program fastANI --min-fraction 0.1 -T 30 --similarity-threshold 0.9 --cluster-method simple_greedy --representative-method Qscore
raised an error :anvi-dereplicate-genomes: error: argument --min-fraction: invalid int value: '0.1'
.Then I changed it to
--min-fraction 10
. There was no error but no clustering happened. I switched to dRep using similar parameters and the clusters were formed.So there seems to be a small bug in the flag
--min-fraction
.The text was updated successfully, but these errors were encountered: