A module with convenience functions for writing Python code that interacts with OMERO.
Just pip install ezomero
and you should be good to go! The repo contains the specific package versions we test ezomero
with in setup.py
, but any Python>=3.8 and latest omero-py
and numpy
should work - note that this package is in active development!
If you want to use get_table
and post_table
to/from Pandas dataframes, you need to install ezomero[tables]
- that install an optional pandas
dependency. Installing ezomero without this will default get_table
and post_table
to use lists of row lists as their default.
In general, you will need to create a BlitzGateway
object using ezomero.connect()
, then pass the conn
object to most of these helper functions along with function-specific parameters.
Documentation is available at https://thejacksonlaboratory.github.io/ezomero/