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Awesome-Medical-Dataset Awesome

Last updated: 2024/10/22

🔥🔥🔥 Medical Dataset is very important for Medical Image Analysis. In this repository, we provide an up-to-date list of medical datasets.

Table of Content


📖 Contents


Medical Image Datasets

Whole Body

Dataset Description Official Website Release Date Challenge
CT-ORG 3D CT, 140 Cases, 6 Categories of Organ Segmentation Github 2020 -
AutoPET 3D PET-CT, 1214 Cases, 1 Category of Whole Body Tumor Segmentation Grand Challenge, Grand Challenge 2022-04 MICCAI'2022 & 2023
TotalSegmentator 3D CT, 1204 Cases, 104 Categories of Whole Body Organ Segmentation Github 2022-07 -
NAFLD 2D Pathological Imaging, 119828 Cases, 16 Categories of Pathological Imaging Classification Project Homepage 2022-10 -
TotalSegmentator V2 3D CT, 1228 Cases, 117 Categories of Whole Body Organ Segmentation Github 2023 -
ULS 3D CT, 38842 Cases, 1 Category of Whole Body Tumor Segmentation Grand Challenge 2023-10 -
TotalSegmentator MRI 3D MR, 298 Cases, 56 Categories of Whole Body Organ Segmentation Github 2024-05 -
MedFMC 2D, 22349 Cases, 5 Tasks of Disease Classification Github 2023-09 -

Head and Neck

Dataset Description Official Website Release Date Challenge
L2R-OASIS 3D MRI, 416 Cases, 35 Categories of Brain Segmentation and Registration Grand Challenge 2007 -
MSseg08 3D MRI, 51 Cases, 1 Category of Multiple Sclerosis Lesion Segmentation Project Homepage 2008 MICCAI'2008
MRBrains13 3D MR: T1, T1IR, FLAIR 320 Cases, 3 Categories of Brain Region Segmentation Project Homepage 2013 -
DDTI 2D Ultrasound, 637 Cases, 1 Category of Thyroid Nodule Segmentation Project Homepage 2015-01 -
Ultrasound Nerve Segmentation 2D Ultrasound, 11143 Cases, 1 Category of Cervical Nerve Segmentation Kaggle 2016-05 Kaggle
BraTS-TCGA-LGG 3D MRI, 65 Cases, 3 Categories of Low Grade Glioma (LGG) Segmentation TCIA 2017 BRATS2015
BraTS-TCGA-GBM 3D MRI, 102 Cases, 3 Categories of Glioblastoma Multiforme (GBM) Segmentation TCIA 2017 BRATS2015
PDDCA 3D CT, 48 Cases, 9 Categories of Head and Neck Organs Segmentation Project Homepage 2017-03 -
BraTS18 3D MRI, 285 Cases, 3 Categories of Brain Tumor Segmentation Project Homepage 2018 MICCAI'2018
ZuCo 2D NLP, 146909 Cases, 3 Categories of EEG (electroencephalography) Sampling in Reading Project Homepage 2018-07 -
iSeg 3D MRI, 13 Cases, 3 Categories of Brain Tissue Segmentation Project Homepage 2019 MICCAI'2017 & 2019
StructSeg2019 Task1 3D CT, 50 Cases, 22 Categories of Head and Neck Organs Segmentation Grand Challenge 2019 MICCAI'2019
StructSeg2019 Task2 3D CT, 50 Cases, 1 Category of Nasopharyngeal Carcinoma Segmentation Grand Challenge 2019 MICCAI'2019
MSD Brain 3D mpMR, 484 Cases, 3 Categories of Glioma Segmentation MSD 2019-02 Medical Segmentation Decathlon
MSD Hippocampus 3D MRI, 394 Cases, 2 Categories of Hippocampus Segmentation MSD 2019-02 Medical Segmentation Decathlon
Head CT-hemorrhage 2D CT, 200 Cases, 2 Categories of Cerebral Hemorrhage Classification Kaggle 2019-09 -
WMH 3D MRI, 170 Cases, 1 Category of White Matter Hyperintensity Segmentation Project Homepage 2019-11 -
TN-SCUI2020 2D Ultrasound, 4554 Cases, 1 Category of Thyroid Nodule Segmentation Grand Challenge 2020-05 MICCAI'2020
AAPM-RT-MAC 3D MRI, 55 Cases, 8 Categories of Parotid Gland, Submandibular Gland, and Level 2 and 3 Lymph Nodes Contour Segmentation TCIA 2020-07 -
CrossMoDA2021 3D T1-CE, T2-HR, 349 Cases, 2 Categories of Tumor and Cochlear Structure Segmentation Grand Challenge 2021-03 MICCAI'2021
BraTS21 3D MRI, 2040 Cases, 3 Categories of Glioma Segmentation Synapse 2021-07 RSNA-ASNR-MICCAI'2021
ATLAS v2.0 (ISLES 2022) 3D MRI, 1271 Cases, 1 Category of Lesions After Stroke Segmentation Grand Challenge 2021-12 MICCAI'2022
FeTA 2022 3D MRI, 280 Cases, 7 Categories of Infant Brain Tissue Segmentation Grand Challenge 2021 MICCAI'2021 & 2022
BrainPTM 3D MR-T1, MR-DWI, 75 Cases, 1 Category of White Matter Tract Mapping and Segmentation Grand Challenge 2021
cSeg 2022 3D MRI, 13 Cases, 3 Categories of Brain Tissue Segmentation Project Homepage 2022-04 MICCAI'2022
HECKTOR 3D PET-CT, 882 Cases, 2 Categories of Tumor and Lymph Node Grand Challenge 2022-06 MICCAI'2022
INSTANCE 2022 3D CT, 200 Cases, 1 Category of Intracranial Hemorrhage Segmentation Grand Challenge 2022-04 MICCAI'2022
ISLES22 3D MRI, 400 Cases, 1 Category of Ischemic Stroke Lesion Segmentation Grand Challenge 2022-05 MICCAI'2022
CuRIOUS2022 3D Ultrasound, 23 Cases, 1 Category of Brain Tumor (Resection) Segmentation Grand Challenge 2022-07 MICCAI'2022
Teeth3DS 3D IOS, 1800 Cases, 32 Categories of Teeth Segmentation Github 2022-10 MICCAI'2022
TN3K 2D Ultrasound, 3494 Cases, 1 Category of Thyroid Nodule Segmentation Github 2021-05 ISBI'2021
TG3K 2D Ultrasound, 3585 Cases, 1 Category of Thyroid Nodule Segmentation Github 2022-12 ISBI'2021
HaN-Seg 3D CT & MRI, 42 Cases, 30 Categories of Head and Neck Organs-at-Risk Segmentation Grand Challenge 2023-01 -
SMILE-UHURA 2023 3D 7T High Resoulution MRI, 14 Cases, 1 Category of Cerebral Artery Segmentation Synapse 2023-03 ISBI'2023
ToothFairy 3D CBCT, 443 Cases, 1 Category of Inferior Alveolar Nerve Segmentation Grand Challenge 2023-03 MICCAI'2023
SegRap 2023 3D CT, 200 Cases, 47 Categories of Head and Neck Organs-at-Risk Segmentation Grand Challenge 2023-04 MICCAI'2023
CAS2023 3D MRI, 100 Cases, 1 Category of Cerebral Artery Segmentation CodaLab 2023-04 MICCAI'2023
CrossMoDA 2023 3D MRI, 983 Cases, 3 Categories of Vestibular Schwannoma (VS) and Cochlea Segmentation Project Homepage 2023-04 MICCAI'2023
UCSF-PDGM 3D MR, 501 Cases, 4 Categories of Diffuse Glioma Segmentation TCIA 2023-04 -
IvyGAP-Radiomics 3D MRI, 31 Cases, 3 Categories of Glioblastoma Segmentation TCIA 2023-04 -
BraTS2023-SSA 3D MRI, 105 Cases, 3 Categories of Glioma Segmentation in Africa Synapse 2023-05 ASNR-MICCAI'BRATS2023
BraTS2023-MEN 3D MRI, 1650 Cases, 3 Categories of Meningioma Segmentation Synapse 2023-05 ASNR-MICCAI'BRATS2023
BraTS2023-PED 3D MRI, 228 Cases, 3 Categories of Pediatrics Glioma Segmentation Synapse 2023-05 ASNR-MICCAI'BRATS2023
BraTS2023-MET 3D MRI, 328 Cases, 3 Categories of Brain Metastasis Segmentation Synapse 2023-06 ASNR-MICCAI'BRATS2023
BONBID-HIE 3D MRI, 133 Cases, 1 Category of Hypoxic-Ischemic Encephalopathy (HIE) Lesion Segmentation Grand Challenge 2023-06 MICCAI'2023
RHUH-GBM 3D MR, 120 Cases, 3 Categories of Glioblastoma Segmentation Project Homepage 2023-06 -
MICCAI'2024 INSTED 3D MR, 191 Cases, 3 Categories of Stroke Segmentation Codabench 2024-01 MICCAI'2024
MICCAI'2024 EPVS 2D/3D MRI, 220 Cases, 1 Category of Enlarged Perivascular Spaces Segmentation Synapse 2024-05 MICCAI'2024
MICCAI 2024 LISA 2024 Task2 3D MRI, 63 Cases, 2 Categories of Hippocampus Segmentation Synapse 2024-05 MICCAI'2024
MMIS-2024@ACM MM 2024 4D MRI, 310 Cases, 2 Categories of Diversified and Personalized Gross Tumor Volume Segmentation Project Homepage 2024-07 MM'2024

Chest

Dataset Description Official Website Release Date Challenge
jsrt-directions 2D X-Ray, 988 Cases, 4 Categories of X-ray Direction Classification Project Homepage 2000-01 -
CRASS12 2D X-Ray, 284 Cases, 1 Category of Clavicle Segmentation Grand Challenge 2012-12 -
QIBA-VolCT-1B 3D CT, 323 Cases, 1 Categories of Lung Tumor Segmentation and Lesion Size Measurement TCIA 2015 -
MIAS 2D X-ray, 322 Cases, 7 Categories of Breast Lesions Classification Kaggle 2015 -
LUNA16 3D CT, 888 Cases, 1 Category of Lung Nodule Detection Grand Challenge 2016-03 LUNA16
Breast Ultrasound Dataset B 2D Ultrasound, 163 Cases, 1 Category of Breast Lesions Detection Project Homepage 2018-06 -
FUMPE 3D CT, 35 Cases, 1 Category of Pulmonary Embolism (PE) Segmentation Figshare 2018-09 -
StructSeg2019 Task3 3D CT, 50 Cases, 6 Categories of Lung Cancer Radiotherapy Organs-at-Risk Segmentation Grand Challenge 2019 MICCAI'2019
StructSeg2019 Task4 3D CT, 50 Cases, 1 Category of Organ-at-risk Fractionation for Radiotherapy for Lung Cancer Segmentation Grand Challenge 2019 MICCAI'2019
SegTHOR 3D CT, 60 Cases, 4 Categories of Thoracic Organs at Risk Segmentation CodaLab 2019-01 ISBI'2019
MSD Lung Tumours 3D CT, 96 Cases, 1 Category of Lung Tumor Segmentation MSD 2019-02 Medical Segmentation Decathlon
LNDb 3D CT, 294 Cases, 1 Category of Lung Nodule Segmentation Grand Challenge 2019-11 ICIAR'2020
BUSI 3D Ultrasound, 780 Cases, 3 Categories of Breast Tumor Segmentation Project Homepage 2019-11 -
PleThora 3D CT, 402 Cases, 2 Categories of Pleural Effusion and Thoracic Segmentation TCIA 2020-04 -
SARS-COV-2 Ct-Scan 2D CT, 2482 Cases, 2 Categories of Pneumonia Classification Kaggle 2020-05 -
COVID_CT_COVID-CT 2D CT, 746 Cases, 2 Categories of Pneumonia Classification Tianchi 2020-06 -
COVIDGR 2D X-Ray, 852 Cases, 2 Categories Pneumonia Classification Github 2020-12 -
CMMD 2D X-ray, 5334 Cases, 2 Categories of Breast Cancer Classification TCIA 2021 -
COVID-19 CHEST X-RAY DATABASE 2D X-ray, 3886 Cases, 3 Categories of Pneumonia Classification Project Homepage 2021-01 -
Chest CT-Scan images 2D CT, 1000 Cases, 4 Categories of Lung Tumor Classification Tianchi 2021-03 -
COVID-19-CT SCAN IMAGES 2D CT, 1400 Cases, 2 Categories of Pneumonia Classification Tianchi 2021-03 -
Chest X-ray PD Dataset 2D X-Ray, 4575 Cases, 3 Categories of Pneumonia Classification Project Homepage 2021-04 -
Shenzhen chest X-ray set 2D X-Ray, 662 cases, 2 Categories of Tuberculosis Classification NIH 2021-06 -
ISPY1-Tumor-SEG-Radiomics 3D MRI, 483 Cases, 1 Category of Breast Tumors Segmentation TCIA 2022-06 -
Chest X-Ray Imaging_(Pneumonia) 2D X-ray, 5856 Cases, 2 Categories of Pneumonia Classification Project Homepage 2022-07 -
Parse 2022 3D CT, 200 Cases, 1 Category of Pulmonary Artery Segmentation Grand Challenge 2022-04 MICCAI'2022
ATM22 3D CT, 500 Cases, 1 Category of Lung Airway Segmentation Grand Challenge 2022-05 MICCAI'2022
MVSeg-3DTEE 2023 3D Ultrasound, 175 Cases, 2 Categories of Mitral Valve Segmentation Synapse 2023 MICCAI'2023
TDSC-ABUS2023 3D Ultrasound, 200 Cases, 1 Category of Breast Tumor Detection, Segmentation and Classification Grand Challenge 2023-03 MICCAI'2023
AIIB23 3D CT, 312 Cases, 1 Category of Lung Airway Segmentation CodaLab 2023-05 MICCAI'2023
SEG.A. 3D CTA, 56 Cases, 1 Category of Aorta Segmentation Grand Challenge 2023-05 MICCAI'2023
LNQ 2023 3D CT, 513 Cases, 1 Category of Lymph Node Quantification Grand Challenge 2023-05 MICCAI'2023

Abdomen

Dataset Description Official Website Release Date Challenge
SLIVER07 3D CT, 30 Cases, 1 Category of Liver Segmentation Grand Challenge 2007 -
NCT-CRC-HE-100K 2D Pathology, 100,000 Cases, 9 Categories of Colorectal Classification Zenodo 2008-04 -
Promise09 3D MRI, 15 Cases, 1 Category of Prostate Segmentation Project Homepage 2009 MICCAI'2009
3D-IRCADB 3D CT, 22 Cases, 40 Categories of Abdominal Organ and Tumor Segmentation Project Homepage 2010 -
VESSEL12 3D CT, 20 Cases, 1 Category of Vessel Segmentation Grand Challenge 2012-05 ISBI'2012
BTCV 3D CT, 50 Cases, 13 Categories of Abdominal Organ Segmentation Synapse 2015-04 MICCAI'2015
BTCV Cervix 3D CT, 50 Cases, 4 Categories of Abdominal Organ Segmentation Synapse 2015-04 MICCAI'2015
LiTS 3D CT, 201 Cases, 2 Categories of Liver and Tumor Segmentation CodaLab 2017-06 ISBI'2017, MICCAI'2017 & 2018
MSD Pancreas Tumour 3D CT, 420 Cases, 2 Categories of Pancreas and Tumour Segmentation MSD 2019-02 Medical Segmentation Decathlon
MSD Hepatic Vessel 3D CT, 443 Cases, 2 Categories Liver Blood vessels and Tumor Segmentation MSD 2019-02 Medical Segmentation Decathlon
MSD Spleen 3D CT, 61 Cases, 1 Category of Spleen Segmentation MSD 2019-02 Medical Segmentation Decathlon
MSD Colon Cancer 3D CT, 190 Cases, 1 Category of Colon Tumor Segmentation MSD 2019-02 Medical Segmentation Decathlon
MSD Prostate 3D MR, 48 Cases, 2 Categories of Prostate Segmentation MSD 2019-02 Medical Segmentation Decathlon
Gleason 2019 2D Pathology, 331 Cases, 6 Categories of Prostate Cancer Classification Grand Challenge 2019 MICCAI'2019
KiTS19 3D CT, 300 Cases, 2 Categories of Kidney and Tumor Segmentation Grand Challenge 2019-03 MICCAI'2019
CHAOS 3D CT&MRI, 40 Cases, 4 Categories of Abdominal Organ Segmentation Grand Challenge 2019-04 ISBI'2019
Pancreas-CT 3D Contrast-enhanced CT, 80 Cases, 1 Category of Healthy Pancreas Segmentation TCIA 2020 -
QIN-PROSTATE-Repeatability 3D MR, 30 Cases, 3 Categories of Prostate Segmentation TCIA 2020-11 -
KiTS21 3D CT, 400 Cases, 3 Categories of Kidney and Tumor Segmentation Project Homepage 2021-03 MICCAI'2021
FLARE 2021 3D CT, 511 Cases, 4 Categories of Abdominal Organ Segmentation Grand Challenge 2021-05 MICCAI'2021
AbdomenCT-1K 3D CT, 1112 Cases, 4 Categories of Abdominal Organ Segmentation Github 2021-07 -
QUBIQ2021 3D CT, 90 Cases, 2 Categories of Pancreas and Lesions Segmentation Grand Challenge 2021-08 MICCAI'2021
WORD 3D CT, 150 Cases, 16 Categories of Abdominal Organ Segmentation Github 2021-11 -
NuCLS 2D Pathology, 119828 Cases, Gastric Cancer Pathology Image Classification Project Homepage 2022-03 -
FLARE 2023 3D CT, 2300 Cases, 13 Categories of Abdominal Organ Segmentation Grand Challenge 2022-03 MICCAI'2022
UW-Madison GI Tract Image Segmentation 2D MRI, 38496 Cases, 3 Categories of Gastrointestinal Tract Segmentation Kaggle 2022-04 -
KiPA22 3D CTA, 130 Cases, 4 Categories of Vessel and Tumor Segmentation Grand Challenge 2022-04 MICCAI'2022
AMOS 2022 3D CT&MRI, 600 Cases, 15 Categories of Abdominal Organ Segmentation Grand Challenge 2022-05 MICCAI'2022
PI-CAI 3D MR, 1500 Cases, 1 Category of Prostate Tumor Segmentation Grand Challenge 2022-05 -
HCC-TACE-Seg 3D CT, 628 Cases, 4 Categories of Liver and Liver Tumor Segmentation TCIA 2022-08 -
EBHI-Seg 2D Pathology, 4456 Cases, 6 Categories of Colon Segmentation Project Homepage 2023-01 -
LLD-MMRI2023 3D MRI, 394 Cases, Liver Lesion Detection Github 2023-02 MICCAI'2023
SPPIN 3D MRI, 111 Cases, 1 Category of Pediatric Neuroblastoma Segmentation Grand Challenge 2023-04 MICCAI'2023
FLARE 2023 3D CT, 4500 Cases, 14 Categories of Abdominal Organ and Tumor Segmentation CodaLab 2023-04 MICCAI'2023
KiTS23 3D CT, 599 Cases, 3 Categories of Kidney and Tumor Segmentation Project Homepage 2023-04 MICCAI'2023
ATLAS (MICCAI2023) 3D CE-MRI, 90 Cases, 2 Categories of Liver and Tumor Segmentation Grand Challenge 2023-04 MICCAI'2023
MOOD2023 3D CT&MR, 1300 Cases, Out-of-Distribution Detection Project Homepage 2023-04 MICCAI'2023
MICCAI 2023 PSFHS 2D Ultrasound, 5101 (4000) Cases, 2 Categories of Fetal Head and Pubic Symphysis (FH-PS) Segmentation Grand Challenge 2023-04 MICCAI'2023
Adrenal-ACC-Ki67-Seg 3D CT, 57 Cases, 1 Category of Pathologically Confirmed Adrenocortical Carcinoma Segmentation TCIA 2023-05 -
AbdomenAtlas 1.0 Mini 3D CT, 5195 Cases, 9 Categories of Abdominal Organ Segmentation Github 2024-02 -
FLARE 2024 Task 1 3D CT, 10000 Cases, 1 Category of Whole Body Tumor Segmentation Codabench 2024-04 MICCAI'2024
FLARE 2024 Task 3 3D MRI, 4817 Cases, 13 Categories of Abdomen Organs Segmentation Codabench 2024-04 MICCAI'2024
MICCAI 2024 CARE-LiQA 3D MRI, 250 Cases, 2 Categories of Liver Segmentation and Fibrosis Staging Project Homepage 2024-05 MICCAI'2024
FedSurg 2D Laparoscopy, 30 Cases, 6 Categories of Laparoscopic Appendectomy Synapse 2024-05 MICCAI'2024
MICCAI-24 ACOUSLIC 3D Ultrasound, 600 Cases, 3 Categories of Fetal Abdomen Waist Measurement Grand Challenge 2024-05 MICCAI'2024
MICCAI 2024 PENGWIN Task1 3D CT, 100 Cases, 3 Categories of Pelvis Segmentation Grand Challenge 2024-07 MICCAI'2024

Heart

Dataset Description Official Website Release Date Challenge
ACDC 3D MRI, 150 Cases, 3 Categories of Left and Right Ventricles and Myocardial Segmentation Project Homepage 2017 MICCAI'2017
MM-WHS 3D CT/MRI, 120 Cases, 7 Categories of Heart Substructure Segmentation Github 2017 MICCAI'2017
MSD Cardiac 3D MRI, 30 Cases, 1 Category of Left Atrium Segmentation MSD 2019-02 Medical Segmentation Decathlon
M&Ms Cardiac CMR Segmentation 3D MR, 375 Cases, 3 Categories of Left and right ventricles and myocardial segmentation Project Homepage 2020 MICCAI'2020
EMIDEC 3D DE-MRI, 150 Cases, 3 Categories of Assessment of Myocardial Infarction Segmentation Project Homepage 2020-04 MICCAI'2020
MyoPS 2020 3D MRI, 45 Cases, 5 Categories of Myocardial Pathology Segmentation Github 2020-04 MICCAI'2020
LAScarQS 2022 3D MRI, 194 Cases, 2 Categories of Left Atrium and Scar Segmentation Github 2022-04 MICCAI'2022
CMRxMotion 3D MRI, 360 Cases, 3 Categories of Heart Structure Segmentation Synapse 2022-05 MICCAI'2022
ImageCAS 3D CTA, 1000 Cases, 1 Category of Coronary Artery Segmentation Github 2023 -
CardiacUDA 2D Ultrasound, 992 Cases, 5 Categories of Heart Structure Segmentation Github 2023-09 -
MICCAI 2024 CARE MyoPS++ 3D CMR, 2741 Cases, 5 Categories of Myocardial Lesion Segmentation Project Homepage 2024-05 MICCAI'2024
MICCAI 2024 CARE WHS++ 3D CT/CTA, 206 Cases, 1 Category of Whole heart segmentation Project Homepage 2024-05 MICCAI'2024
MICCAI 2024 CARE LAScarQS++ 3D LGE MRI, 194 Cases, 3 Categories of Left Atrial Cavity Segmentation and Scar Quantification Project Homepage 2024-05 MICCAI'2024

Bones

Dataset Description Official Website Release Date Challenge
TCB Challeng 2D Bone Radiograph, 174Cases, 2 Categories of Osteoporosis Classification Project Homepage 2016-08 -
MURA 2D X-ray, 40561 Cases, 2 Categories of Musculoskeletal Classification Project Homepage 2018 -
IVDM3Seg 3D MRI, 16 Cases, 1 Category of Intervertebral Disc Segmentation Project Homepage 2018-09 MICCAI'2018
Osteosarcoma Tumor Assessment 2D Pathological Imaging, 1144 Cases, 3 Categories of Tumor after Surgical Resection Classification TCIA 2019 -
VerSe 3D CT, 374 Cases, 26 Categories of Spine Segmentation Github 2020-05 MICCAI'2019 & 2020
RibFrac 2020 3D CT, 660 Cases, 4 Categories of Rib Fracture Detection and Classification Grand Challenge 2020-06 MICCAI'2020
Digital Knee X-ray Images 2D X-Ray, 1650 Cases, 5 Categories of Knee Joint Diseases Classification Project Homepage 2020-06 -
CTPelvic1K 3D CT, 1184 Cases, 4 Categories of Lumbar Spine, Sacrum, Left and Right Hip Segmentation Github 2020-12 -
CTSpine1K 3D CT, 1005 Cases, 25 Categories of Spine Segmentation Github 2021-05 -
SPIDER 3D MR, 544 Cases, 19 Categories of Spine, Intervertebral Disc, Spinal Canal Segmentation Grand Challenge 2023-06 -
Fractured Bone Detection 3D CT, 24 Cases, 2 Categories of 2 Fractures Classification Kaggle 2023-06 -

Endoscopy

Dataset Description Official Website Release Date Challenge
CVC-ClinicDB 2D, Endoscopy, 612 Cases, 1 Category of Colon Polyp Segmentation Grand Challenge 2015-02 MICCAI'2015
AIDA-E2 2D Endoscopy, 262 Cases, 3 Categories of Digestive Tract Disease Classification Grand Challenge 2015-11 ISBI'2016
Cholec80 Cholecystectomy Surgery Video Dataset 2D Endoscopy, 370,168 Cases, 14 Categories of Surgical Action Types and Instrument Classification Github 2016-02 -
Colonoscopic 2D Endoscopy, 152 Cases, 3 Categories of Gastrointestinal Lesions Classification Project Homepage 2016-09 -
Intel & MobileODT Cervical Cancer Screening 2D Hysteroscopy, 6733 Cases, 3 Categories of Cervix Image Classification Kaggle 2017-03 -
The Nerthus Dataset 2D Endoscopy, 5525 Cases, 4 Categories of Intestinal Cleansing Levels Classification Project Homepage 2017-06 -
Robotic Instrument Segmentation 2D Endoscopy, 3000 Cases, 4 Categories of Surgical Instruments Segmentation Grand Challenge 2017-08 MICCAI'2017
EAD 2019 2D Endoscopy, 2991 Cases, 7 Categories of Esophageal, Colon, Stomach, Bladder, Liver Segmentation Grand Challenge 2019-08 -
Kvasir-SEG 2D Endoscopy, 1160 Cases, 1 Category of Colon Polyp Segmentation Github 2019-11 -
SARAS-ESAD 2D Endoscopy, 33398 Cases, 21 Categories of Surgical Action Recognition Grand Challenge 2020-01 -
SUN Colonoscopy Video 2D Endoscopy, 158,690 Cases, 1 Category of Polyp Segmentation Project Homepage 2020-07 -
Sinus Surgery Endoscopic Image Datasets 2D Rhinoscopy, 9003 Cases, 1 Category of Surgical Instrument Segmentation Github 2020-08 -
EndoVisSub2018-RoboticSceneSegmentation 2D Endoscopy, 7274 Cases, Robotic Surgery Scene Segmentation Grand Challenge 2020-08 MICCAI'2018
EndoSLAM 2D Endoscopy, 64577 Cases, 3D Reconstruction Github 2020-10 -
m2caiseg 2D Endoscopy, 307 Cases, 19 Categories of Abdominal Organs and Surgical Equipment Segmentation Kaggle 2020-12 MICCAI'2016
CholecSeg8k 2D Endoscopy, 8080 Cases, 13 Categories of Cholecystectomy Surgery Semantic Segmentation Kaggle 2020-12 -
Kvasir-Capsule 2D Endoscopy, 4741504 Cases, 14 Categories of Digestive Tract Lesion Segmentation Project Homepage 2021-05 -
FetReg 2021 Task1 2D Fetoscope, 2718 Cases, 3 Categories of Blood vessels, Fetus, Surgical Tools Segmentation Synapse 2021-07 MICCAI'2021
LDPolypVideo 2D Endoscopy, 861400 Slices, 1 Category of Polyp Detection Github 2021-09 -
EndoMapper 2D Endoscopy Video, 59 Cases, 3D Reconstruction and VSLAM Synapse 2022-04 -
CholecT45 Dataset 2D Endoscopy, 90489 Cases, 128 Categories of Cholecystectomy Surgery Action Recognition Github 2022-04 -
Surgical scene segmentation 2D Endoscopy, 9156 Cases, 32 Categories of Surgery Scene Segmentation Project Homepage 2022-09 -
LIMUC 2D Endoscopy, 11276 Cases, 4 Categories of Mayo Score Classification Github 2022-11 -
PitVis 2D Endoscopy, 120024 Cases, 15 Categories of Workflow Identification in Endoscopic Pituitary Surgery Project Homepage 2023 MICCAI'2023
Endoscopic Bladder Tissue Classification Dataset 2D Endoscopy, 1754 Cases, 4 Categories of Cystoscopy Tissue Classification Project Homepage 2023-03 -
C3VD 2D Endoscopy, 10015 Cases, 3D Reconstruction Project Homepage 2023-08 -
SurgVU24 2D Endoscopy, 280 Cases, 12 Categories of Surgical Instruments and 8 Categories of Surgical Tasks Video Timing Positioning Grand Challenge 2024-05 MICCAI'2024

Retina

Dataset Description Official Website Release Date Challenge
STARE 2D Retinal Images, 20 Cases, 1 Category of Fundus Blood Vessels Segmentation Project Homepage 2000-03 -
DRIVE 2D Retinal Images, 40 Cases, 1 Category of Fundus Blood Vessels Segmentation Grand Challenge 2004-04 -
CHASE 2D Retinal Images, 28 Cases, 1 Category of Fundus Blood Vessels Segmentation Project Homepage 2011-06 -
DRiDB 2D Retinal Images, 648 Cases, 3 Categories of Diabetic Retinopathy Classification Project Homepage 2013 -
RITE 2D Retinal Images, 40 Cases, 1 Category of Fundus Blood Vessels Segmentation Project Homepage 2013 -
HRF 2D Retinal Images, 45 Cases, 1 Category of Fundus Blood Vessels Segmentation Project Homepage 2013-12 -
Messidor-2 2D Retinal Images, 1748 Cases, 2 Categories of Diabetic Retinopathy Classification Project Homepage 2013 -
DRISHTI-GS 2D Retinal Images, 101 Cases, 2 Categories of Optic Cup and Optic Disc Segmentation Project Homepage 2014 -
Retinal image quality assessment dataset 2D Retinal Images, 216 Cases, 3 Categories of Image Quality Evaluation Project Homepage 2014-04 -
Retina 2D Retinal Images, 601 Cases, 4 Categories of Cataracts, Glaucoma Retinopathy - 2016 -
Eyepacs 2D Retinal Images, 35126 Cases, 5 Categories of Diabetic Retinopathy Grading Project Homepage 2016 -
RETOUCH 3D OCT, 112 Cases, 3 Categories of Retinal Fluid Segmentation Grand Challenge 2017-04 MICCAI'2017
LES-AV 2D Retinal Images, 22 Cases, 1 Category of Fundus Blood Vessels Segmentation Project Homepage 2018 -
OCT 2017 2D OCT, 35126 Cases, 4 Categories of Eye Disease Classification Github 2018 -
Papilledema 2D Fundus, 1369 Cases, 3 Categories of Papilledema Classification Project Homepage 2018 -
REFUGE 2D Fundus, 1200 Cases, 2 Categories of Glaucoma Classification, 2 Categories of Optic Disc/Cup Segmentation Grand Challenge 2018-03 MICCAI'2018
IDRID 2D Retinal Images, 81 Cases, 5 Categories of Diabetic Retinopathy Segmentation Grand Challenge 2018-07 ISBI'2018
PALM19 2D Retinal Images, 1200 Cases, 1 Category of Fundus Blood Vessels Segmentation Project Homepage 2019 ISBI'2019
ACRIMA 2D Retinal Images, 705 Cases, 2 Categories of Glaucoma Classification Project Homepage 2019-03 -
ROSE 2D OCT, 229 Cases, 1 Category Fundus Blood Vessels Segmentation Project Homepage 2020 -
OCTA-500 2D OCT , 500 Cases, 1 Category of Fundus Blood Vessel Segmentation Project Homepage 2020-06 -
RIM-ONE DL 2D Retinal Images, 485 Cases, 2 Categories of Glaucoma Classification and Optic Disc and Optic Cup Segmentation Github 2020-06 -
ORVS 2D Retinal Images, 49 Cases, 1 Category of Fundus Blood Vessels Segmentation Github 2020-12 -
JSIEC 2D Retinal Images, 1000 Cases, 39 Categories of Eye Diseases Classification Kaggle 2021 -
Diabetic Retinopathy Arranged 2D Retinal Images, 35127 Cases, 5 Categories of Diabetic Retinopathy Classification Project Homepage 2021-03 -
Augemnted ocular diseases(AOD) 2D Retinal Images, 14.8k Cases, 7 Categories of Major Eye Diseases Classification Kaggle 2021-04 -
BEH (Bangladesh Eye Hospital) 2D Fundus photograph, 634 Casesm, 2 Categories of Glaucoma Classification Github 2021-12 -
iChallenge-ADAM-Task1 2D Retinal Images, 800 Cases, 2 Categories of Age-related Macular Degeneration (AMD) Classification Grand Challenge 2022 ISBI'2020
Retinal OCT-C8 2D OCT, 24000 Cases, 8 Categories of Retinal Disease Classification Kaggle 2022-01 -
RAVIR 2D Infrared Reflectance Imaging, 46 Cases, 2 Categories of Retinal Arteries and Veins Segmentation Grand Challenge 2022-03 -
Multi-Label Retinal Diseases 2D Retinal Images, 2451 Cases, 20 Categories of Eye Diseases Classification Mendeley 2022-07 -
FIVES 2D Retinal Images, 800 Cases, 1 Category of Fundus Blood Vessels Segmentation Project Homepage 2022-08 -
OLIVES 2D Fundus Color Photography, 412 Cases, 2 Categories of Diabetic Retinopathy Classification Github 2022 NeurIPS'2022
ODIR-5K 2D Retinal Images, 5000 Cases, 8 Categories of Common Ophthalmic Diseases Classification Grand Challenge 2023 -
AIROGS 2D Fundus, 101442 Cases, 2 Categories of Glaucoma Classification Grand Challenge 2023 -
RFMiD 2.0 2D Retinal Images, 3200 Cases, 45 Categories of Eye Disease Classification Grand Challenge 2023-01 ISBI'2021
ToxoFundus 2D Fundus Color Photos, 412 Cases, 2 Categories of Toxoplasmic Chorioretinitis Classification Kaggle 2023-06 -
Harvard Glaucoma Detection and Progression 2D Fundus photograph, 1544 Cases, 3 Categories of Predicting Glaucoma and Severity Classification Project Homepage 2023-08 -
BiDR 2D Fundus Photography, 2838 Cases, 2 Categories of Diabetic Retinopathy Classification Kaggle 2023-11 -
MICCAI 2024 DIAMOND 2D Fundus photograph, 2 Categories of center-involved DME Prediction and Retina Diseases Classification Codabench 2024-03 MICCAI'2024
Cataract-1K 2D Ophthalmic Microscope, 1000 Cases, 13 Categories of Surgical Stages, 2 Categories of Anomaly Detection, 12 Categories of Segmentations Github 2024-04 -
OphNet 2D Ophthalmic Microscope, 2278 Cases, 66 Categories of Surgeries, 103 Categories of Stages, 150 Categories of Operations Ophthalmic Surgery Video Classification and Localization Project Homepage 2024-07 -

Skin

Dataset Description Official Website Release Date Challenge
PH² 2D Dermoscopic Images, 200 Cases, 2 Categories of Melanoma Segmentation Project Homepage 2015 -
MED-NODE 2D Dermoscopic Images, 170 Cases, 2 Categories of Benign and Malignant Melanoma Classification Project Homepage 2015-07 -
ISIC 2017 2D Dermoscopic Images, 2750 Cases, 1 Category of Melanoma Segmentation Project Homepage 2017 -
Derm7pt 2D Dermoscopic Images, 2000 Cases, 19 Categories of Skin Lesion Malignancy Examination Classification Project Homepage 2019 -
ISIC 2020 2D Dermoscopic Images, 33126 Cases, 2 Categories of Benign and Malignant Melanoma Classification Project Homepage 2020 -
PED-UFES-20 2D Dermoscopic Images, 2298 Cases, 6 Categories of Dermatology classification Mendeley 2020-07 -
Fitzpatrick 17k 2D Dermoscopic Images, 16577 Cases, 6 Categories of Fitzpatrick Skin Type, 114 Categories of Skin Condition Github 2021 -
Web-scraped Skin Image 2D Dermoscopic Images, 804 Cases, 6 Categories of Dermatology Classification Kaggle 2022-08 -
SCIN 2D Dermoscopic Images, 10408 Cases, Skin Pathological Conditions (Appearance and Severity) Classification Project Homepage 2023-02 -

Microscopic imaging

Dataset Description Official Website Release Date Challenge
Herlev-Cervical Smear 2D Histopathology, 917 Cases, 7 Categories of Cervical Smear Classification Project Homepage 2003 -
Corneal Nerve 2D Microscopic Imaging, 90 Cases, 2 Categories of Corneal Abnormality Classification Project Homepage 2008-11 -
Malignant Lymphoma Classification 2D Pathological Sections, 374 Cases, 3 Categories of Malignant Lymphoma Classification Kaggle 2010-07 -
Corneal Nerve Tortuosity 2D Microscopic Imaging, 30 Cases, 3 Categories of Corneal Nerve Distortion Grade Project Homepage 2011-08 -
BioMediTech 2D Cell Imaging, 1862 Cases, 4 Categories of Retinal Cell Classification Project Homepage 2016-02 -
GlaS 2D Pathological Imaging, 165 Cases, 1 Category of Colorectal Gland Tissue Segmentation Project Homepage 2017 MICCAI'2015
HuSHeM 2D Microscopic Imaging, 216 Cases, 4 Categories of Sperm Classification Mendeley 2017-06 -
MoNuSeg 2D Microscopic Imaging, 53 Cases, 1 Category of Nucleus Segmentation Grand Challenge 2017 MICCAI'2018
PatchCamelyon 2D Pathological Imaging, 327,680 Cases, 2 Categories of Breast Cancer Metastasis Classification Project Homepage 2018-06 CAMELYON16
ICIAR 2018 BACH Task1 2D Histology Imaging, 400 Cases, 4 Categories of Breast Cancer Classification Grand Challenge 2018-08 ICIAR'2018
ICIAR 2018 BACH Task2 2D Histology Imaging, 30 Cases, 3 Categories of Breast Cancer Segmentation Grand Challenge 2018-08 ICIAR'2018
CORN 2D Microscopic Imaging, 1698 Cases, 1 Category of Corneal Nerve Segmentation Project Homepage 2019 -
DigestPath2019 2D Pathological Imaging, 250 Cases, 1 Category of Digestive System Pathology Segmentation and Detection Grand Challenge 2019 MICCAI'2019
Leukemia 2D Microscopic Imaging, 1867 Cases, 2 Categories of Leukemia Cell Classification Kaggle 2019 -
ICPR-HEp-2 2D Cell Fluorescence Microscopy Imaging, 14K, 6 Categories of Cell Classification Project Homepage 2019-02 -
Complete Blood Count 2D Blood Smear, 360 Cases, 3 Categories of Blood Cell Count Github 2019-07 -
LC25000 2D Pathological Imaging, 25000 Cases, 5 Categories of Pathological Image Classification Github 2020-01 -
PanNuke 2D Pathology, 7904 Cases, 6 Categories of Nuclear Segmentation Project Homepage 2020-03 -
SICAPv2 Prostate Pathology Segmentation Dataset 2D Pathological Imaging, 18783 Cases, 4 Categories of Prostate Cancer Grade Mendeley 2020-07 -
ANHIR 2D Pathological Imaging, 481 Cases, Pathological Image Lung Lobes and Breast Tissue Registration Grand Challenge 2020-07 ISBI'2019
MitoEM2021 3D Histopathology Imaging, 2 Cases, 1 Category of Mitochondria Segmentation Grand Challenge 2021 ISBI'2021
CoCaHis 2D Pathological Imaging, 82 Cases, 2 Categories of Colon Cancer Tissue Segmentation Project Homepage 2021-01 -
Malaria Cell Images 2D Microscopic Imaging, 27558 Cases, 2 Categories of Malaria Classification Project Homepage 2021-03 -
SegPC21 2D Microscopic Imaging, 498 Cases, 2 Categories of Myeloma Segmentation Grand Challenge 2021-04 ISBI'2021
MHIST 2D Pathological Imaging, 3152 Cases, 2 Categories of Colon Polyps Classification Project Homepage 2021-06 -
Bone Marrow Cytomorphology 2D Pathological Imaging, 171,375 Cases, 21 Categories of Bone Marrow Cell Morphological Classification Project Homepage 2021-11 -
Chaoyang 2D Pathological Imaging, 6160 Cases, 4 Categories of Colonic Lesions Classification Github 2021-11 -
CoNIC2022 2D Pathological Imaging, 4981 Cases, 7 Categories of Nuclei within Tissues Segmentation Grand Challenge 2022 ISBI'2022
NeurIPS 2022 Cell Seg 2D Microscopic Imaging, 3022 Cases, 1 Category of Cell Instance Segmentation Grand Challenge 2022-06 NeurIPS'2022
BRACS 2D Pathological Imaging, 4539 ROIs/547 WSIs, 7 Categories of Breast Cancer Subtype Classification Project Homepage 2022-10 -
BCI 2D Pathological Imaging, 4870 Cases, 4 Categories to convert HE images to IHC images Project Homepage 2023-04 -
MIDOG++ 2D Pathological Imaging, 22688 Cases, 2 Categories of Tumor Tissue Mitotic Classification Github 2023-07 -
SegPANDA200 2D Pathological Imaging, 100960 Cases, 6 Categories of Prostate Tissue Segmentation Project Homepage 2023-10 -
MIST-HER2 2D Pathological Imaging, 22688 Cases, 4 Categories of Critical Biomarkers in Breast Cancer Diagnosis Image Transformation Project Homepage 2023-10 -
KPIs 2D Pathological Imaging, 10428 Patches, 1 Category of Glomerular Tissue Segmentation Project Homepage 2024-03 MICCAI'2024

Image text dataset

Dataset Description Official Website Release Date
IU-Xray RG, 7,470 Frontal or Lateral Chest X-ray Images, with 3,955 Corresponding Reports PaperWithCode 2016
VQA-RAD VQA, 3515 Cases QA Pair Project Homepage 2018-11
ImageClef-2019-VQA-Med VQA, 15292 Cases QA Pair Project Homepage 2019-09
ZuCo 2.0 eeg-to-text Project Homepage 2019-12
PathVQA VQA, 32799 Cases QA Pair Grand Challenge 2020-03
MedICaT VQA, 217060 Cases QA Pair Github 2020-12
SLAKE VQA, 14028 Cases QA Pair Project Homepage 2021-02
Montgomery County CXR Set 2D X-Ray, 138 Cases, 2 Categories of CXR Image Abnormality Diagnosis Project Homepage 2021-06
MMMU Health&Medicine VQA, 1752 Cases QA Pair Mendeley 2022-07
PMC-OA VQA, 1.6M QA Pair Project Homepage 2023-03
PMC-VQA VQA, 227K Cases Github 2023-05
Quilt-1M Caption, 768826 Cases Project Homepage 2023-06
ROCOV2 Caption, 80080 Cases Image-Caption Pair Zenodo 2023-11
RP3D-Caption Caption, 69523 Cases Image-Caption Pair Project Homepage 2023-11
PMC-Inline Caption, 11,000,000 Images Hugginface 2023-11
CT-RATE Caption, 47149 Cases Hugginface 2024-03
MedPromptX-VQA VQA, 968 Cases QA Pair Project Homepage 2024-03
WSI-VQA VQA, 8672 Cases QA Pair Github 2024-07
Medical-CXR-VQA 2D X-Ray, 780014 Cases, LLMs specializing in chest X-ray images Github 2024-07

Text dataset

Dataset Description Official Website Release Date
LiveQA QA, 634 Cases QA Pair Github 2017
cMedQA v2.0 QA, 108K Cases QA Pair Github 2018-12
webMedQA QA, 63,284 Cases QA Pair Github 2019
PubMedQA QA, 1000 Cases Expert annotation QA Pair Project Homepage 2019
MedDialog-CN QA, 1.1M Cases QA Pair Github 2020-07
MedQA QA, 61,097 Cases QA Pair Github 2020-09
Chinese Medical Dialogue Dataset QA, 792K Cases QA Pair Project Homepage 2021-02
MedMCQA QA, 193,155 Cases QA Pair Project Homepage 2022-03
Huatuo-26M QA, 26M Cases QA Pair Github 2023-05
HealthSearchQA QA, 3173 Cases QA Pair Paper 2023-07
CMB QA, 270K Cases QA Pair Github 2023-08
ShenNong-TCM-Dataset/EB QA, 113K Cases QA Pair Github 2023-08
CMExam QA, 68K Cases QA Pair Github 2023-10
MedBench QA, 113K Cases QA Pair Project Homepage 2023-12
RJUA-QA QA, 213 Cases QA Pair Github 2023
ChineseEEG Semantic Decoding and Matching, 25 Phases and 115,233 Characters Github 2024-03