From f314b595af6cba52828f8ed756bf5abffcca6629 Mon Sep 17 00:00:00 2001 From: Matt Shirley Date: Fri, 3 Aug 2018 21:22:23 -0400 Subject: [PATCH] Add support for carriage returns. Fixes #141 --- pyfaidx/__init__.py | 17 +- tests/data/issue_141.fasta | 1021 ++++++++++++++++++++++++++++++++ tests/test_feature_indexing.py | 27 + 3 files changed, 1060 insertions(+), 5 deletions(-) create mode 100644 tests/data/issue_141.fasta diff --git a/pyfaidx/__init__.py b/pyfaidx/__init__.py index 32e475f..d635b65 100644 --- a/pyfaidx/__init__.py +++ b/pyfaidx/__init__.py @@ -25,7 +25,7 @@ dna_bases = re.compile(r'([ACTGNactgnYRWSKMDVHBXyrwskmdvhbx]+)') -__version__ = '0.5.4.1' +__version__ = '0.5.4.2' class KeyFunctionError(ValueError): @@ -499,7 +499,7 @@ def read_fai(self): def build_index(self): try: - with self._fasta_opener(self.filename, 'r') as fastafile: + with self._fasta_opener(self.filename, 'rb') as fastafile: with open(self.indexname, 'w') as indexfile: rname = None # reference sequence name offset = 0 # binary offset of end of current line @@ -512,6 +512,7 @@ def build_index(self): lastline = None for i, line in enumerate(fastafile): line_blen = len(line) + line = line.decode() line_clen = len(line.rstrip('\n\r')) lastline = i # write an index line @@ -667,7 +668,7 @@ def from_file(self, rname, start, end, internals=False): seq = '' if not internals: - return seq.replace('\n', '') + return seq.replace('\n', '').replace('\r', '') else: return (seq, locals()) @@ -709,14 +710,20 @@ def to_file(self, rname, start, end, seq): ) elif len(seq) == len(file_seq) - internals['newlines_inside']: line_len = internals['i'].lenc + if '\r\n' in file_seq: + newline_char = '\r\n' + elif '\r' in file_seq: + newline_char = '\r' + else: + newline_char = '\n' self.file.seek(internals['bstart']) if internals['newlines_inside'] == 0: self.file.write(seq.encode()) elif internals['newlines_inside'] > 0: n = 0 - m = file_seq.index('\n') + m = file_seq.index(newline_char) while m < len(seq): - self.file.write(''.join([seq[n:m], '\n']).encode()) + self.file.write(''.join([seq[n:m], newline_char]).encode()) n = m m += line_len self.file.write(seq[n:].encode()) diff --git a/tests/data/issue_141.fasta b/tests/data/issue_141.fasta new file mode 100644 index 0000000..02fb8d6 --- /dev/null +++ b/tests/data/issue_141.fasta @@ -0,0 +1,1021 @@ +>gi|563317589|dbj|AB821309.1| Homo sapiens FGFR2-AHCYL1 mRNA for FGFR2-AHCYL1 fusion kinase protein, complete cds +ATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCT +CCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAGATGCCATCTCATCCGGAGATGATGAGGATGA +CACCGATGGTGCGGAAGATTTTGTCAGTGAGAACAGTAACAACAAGAGAGCACCATACTGGACCAACACA +GAAAAGATGGAAAAGCGGCTCCATGCTGTGCCTGCGGCCAACACTGTCAAGTTTCGCTGCCCAGCCGGGG +GGAACCCAATGCCAACCATGCGGTGGCTGAAAAACGGGAAGGAGTTTAAGCAGGAGCATCGCATTGGAGG +CTACAAGGTACGAAACCAGCACTGGAGCCTCATTATGGAAAGTGTGGTCCCATCTGACAAGGGAAATTAT +ACCTGTGTGGTGGAGAATGAATACGGGTCCATCAATCACACGTACCACCTGGATGTTGTGGAGCGATCGC +CTCACCGGCCCATCCTCCAAGCCGGACTGCCGGCAAATGCCTCCACAGTGGTCGGAGGAGACGTAGAGTT +TGTCTGCAAGGTTTACAGTGATGCCCAGCCCCACATCCAGTGGATCAAGCACGTGGAAAAGAACGGCAGT +AAATACGGGCCCGACGGGCTGCCCTACCTCAAGGTTCTCAAGCACTCGGGGATAAATAGTTCCAATGCAG +AAGTGCTGGCTCTGTTCAATGTGACCGAGGCGGATGCTGGGGAATATATATGTAAGGTCTCCAATTATAT +AGGGCAGGCCAACCAGTCTGCCTGGCTCACTGTCCTGCCAAAACAGCAAGCGCCTGGAAGAGAAAAGGAG +ATTACAGCTTCCCCAGACTACCTGGAGATAGCCATTTACTGCATAGGGGTCTTCTTAATCGCCTGTATGG +TGGTAACAGTCATCCTGTGCCGAATGAAGAACACGACCAAGAAGCCAGACTTCAGCAGCCAGCCGGCTGT +GCACAAGCTGACCAAACGTATCCCCCTGCGGAGACAGGTAACAGTTTCGGCTGAGTCCAGCTCCTCCATG +AACTCCAACACCCCGCTGGTGAGGATAACAACACGCCTCTCTTCAACGGCAGACACCCCCATGCTGGCAG +GGGTCTCCGAGTATGAACTTCCAGAGGACCCAAAATGGGAGTTTCCAAGAGATAAGCTGACACTGGGCAA +GCCCCTGGGAGAAGGTTGCTTTGGGCAAGTGGTCATGGCGGAAGCAGTGGGAATTGACAAAGACAAGCCC +AAGGAGGCGGTCACCGTGGCCGTGAAGATGTTGAAAGATGATGCCACAGAGAAAGACCTTTCTGATCTGG +TGTCAGAGATGGAGATGATGAAGATGATTGGGAAACACAAGAATATCATAAATCTTCTTGGAGCCTGCAC +ACAGGATGGGCCTCTCTATGTCATAGTTGAGTATGCCTCTAAAGGCAACCTCCGAGAATACCTCCGAGCC +CGGAGGCCACCCGGGATGGAGTACTCCTATGACATTAACCGTGTTCCTGAGGAGCAGATGACCTTCAAGG +ACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAATGTATTCATCG +AGATTTAGCAGCCAGAAATGTTTTGGTAACAGAAAACAATGTGATGAAAATAGCAGACTTTGGACTCGCC +AGAGATATCAACAATATAGACTATTACAAAAAGACCACCAATGGGCGGCTTCCAGTCAAGTGGATGGCTC +CAGAAGCCCTGTTTGATAGAGTATACACTCATCAGAGTGATGTCTGGTCCTTCGGGGTGTTAATGTGGGA +GATCTTCACTTTAGGGGGCTCGCCCTACCCAGGGATTCCCGTGGAGGAACTTTTTAAGCTGCTGAAGGAA +GGACACAGAATGGATAAGCCAGCCAACTGCACCAACGAACTGTACATGATGATGAGGGACTGTTGGCATG +CAGTGCCCTCCCAGAGACCAACGTTCAAGCAGTTGGTAGAAGACTTGGATCGAATTCTCACTCTCACAAC +CAATGAGCAATTCCAGTTTGCTGATGACATGCAGGAGTTCACCAAATTCCCCACCAAAACTGGCCGAAGA +TCTTTGTCTCGCTCGATCTCACAGTCCTCCACTGACAGCTACAGTTCAGCTGCATCCTACACAGATAGCT +CTGATGATGAGGTTTCTCCCCGAGAGAAGCAGCAAACCAACTCCAAGGGCAGCAGCAATTTCTGTGTGAA +GAACATCAAGCAGGCAGAATTTGGACGCCGGGAGATTGAGATTGCAGAGCAAGACATGTCTGCTCTGATT +TCACTCAGGAAACGTGCTCAGGGGGAGAAGCCCTTGGCTGGTGCTAAAATAGTGGGCTGTACACACATCA +CAGCCCAGACAGCGGTGTTGATTGAGACACTCTGTGCCCTGGGGGCTCAGTGCCGCTGGTCTGCTTGTAA +CATCTACTCAACTCAGAATGAAGTAGCTGCAGCACTGGCTGAGGCTGGAGTTGCAGTGTTCGCTTGGAAG +GGCGAGTCAGAAGATGACTTCTGGTGGTGTATTGACCGCTGTGTGAACATGGATGGGTGGCAGGCCAACA +TGATCCTGGATGATGGGGGAGACTTAACCCACTGGGTTTATAAGAAGTATCCAAACGTGTTTAAGAAGAT +CCGAGGCATTGTGGAAGAGAGCGTGACTGGTGTTCACAGGCTGTATCAGCTCTCCAAAGCTGGGAAGCTC +TGTGTTCCGGCCATGAACGTCAATGATTCTGTTACCAAACAGAAGTTTGATAACTTGTACTGCTGCCGAG +AATCCATTTTGGATGGCCTGAAGAGGACCACAGATGTGATGTTTGGTGGGAAACAAGTGGTGGTGTGTGG +CTATGGTGAGGTAGGCAAGGGCTGCTGTGCTGCTCTCAAAGCTCTTGGAGCAATTGTCTACATTACCGAA +ATCGACCCCATCTGTGCTCTGCAGGCCTGCATGGATGGGTTCAGGGTGGTAAAGCTAAATGAAGTCATCC +GGCAAGTCGATGTCGTAATAACTTGCACAGGAAATAAGAATGTAGTGACACGGGAGCACTTGGATCGCAT +GAAAAACAGTTGTATCGTATGCAATATGGGCCACTCCAACACAGAAATCGATGTGACCAGCCTCCGCACT +CCGGAGCTGACGTGGGAGCGAGTACGTTCTCAGGTGGACCATGTCATCTGGCCAGATGGCAAACGAGTTG +TCCTCCTGGCAGAGGGTCGTCTACTCAATTTGAGCTGCTCCACAGTTCCCACCTTTGTTCTGTCCATCAC +AGCCACAACACAGGCTTTGGCACTGATAGAACTCTATAATGCACCCGAGGGGCGATACAAGCAGGATGTG +TACTTGCTTCCTAAGAAAATGGATGAATACGTTGCCAGCTTGCATCTGCCATCATTTGATGCCCACCTTA +CAGAGCTGACAGATGACCAAGCAAAATATCTGGGACTCAACAAAAATGGGCCATTCAAACCTAATTATTA +CAGATACTAA +>gi|557361099|gb|KF435150.1| Homo sapiens MDM4 protein variant Y (MDM4) mRNA, complete cds, alternatively spliced +ATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAGTGCTTGCAGGATCTCTCCTGGACAAA +TCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCATGCAGCAGGTGCGCAAGGTGAAATGTT +CACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGGTGAAGCAACTTTATGATCAGCAGGAG +CAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACTGGGACGTCAGAGCTTCTCCGTGAAAG +ACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACTTTAGCCACTGCTACTACAGCAAAGTG +CAGAGGAAAGTTCCACTTCCAGAAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCTCAGAGCA +TAAATGCATACATTCTAGAGAAGGTGATTGAAGTGGGAAAAAATGATGACCTGGAGGACTC +>gi|557361097|gb|KF435149.1| Homo sapiens MDM4 protein variant G (MDM4) mRNA, complete cds +ATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAGTGCTTGCAGGATCTCTCCTGGACAAA +TCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCATGCAGCAGGTGCGCAAGGTGAAATGTT +CACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGGTGAAGCAACTTTATGATCAGCAGGAG +CAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACTGGGACGTCAGAGCTTCTCCGTGAAAG +ACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACTTTAGCCACTGCTACTACAGCAAAGTG +CAGAGGAAAGTTCCACTTCCAGAAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCTCAGAGCA +TAAATGCATACATTCTAGAGAAGATGAAGACTTAATTGAAAATTTAGCCCAAGATGAAACATCTAGGCTG +GACCTTGGATTTGAGGAGTGGGATGTAGCTGGCCTGCCTTGGTGGTTTTTAGGAAACTTGAGAAGCAACT +ATACACCTAGAAGTAATGGCTCAACTGATTTACAGACAAATCAGGTGATTGAAGTGGGAAAAAATGATGA +CCTGGAGGACTC +>gi|543583796|ref|NR_104216.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 8, non-coding RNA +CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC +AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA +CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC +GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG +CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT +TCTGTAGTAATTGTGTAAGTGACTGCATTGGAACTGGATGTCCAGTGTGTTACACCCCGGCCTGGATACA +AGACTTGAAGATAAATAGACAACTGGACAGCATGATTCAACTTTGTAGTAAGCTTCGAAATTTGCTACAT +GACAATGAGCTGTCAGGGCGACATACCTTCTGTTGAATACCTTTTACAAAATGGAAGTGATCCAAATGTT +AAAGACCATGCTGGATGGACACCATTGCATGAAGCTTGCAATCATGGGCACCTGAAGGTAGTGGAATTAT +TGCTCCAGCATAAGGCATTGGTGAACACCACCGGGTATCAAAATGACTCACCACTTCACGATGCAGCCAA +GAATGGGCATGTGGATATAGTCAAGCTGTTACTTTCCTATGGAGCCTCCAGAAATGCTGTTAATATATTT +GGTCTGCGGCCTGTCGATTATACAGATGATGAAAGTATGAAATCGCTATTGCTGCTACCAGAGAAGAATG +AATCATCCTCAGCTAGCCACTGCTCAGTAATGAACACTGGGCAGCGTAGGGATGGACCTCTTGTACTTAT +AGGCAGTGGGCTGTCTTCAGAACAACAGAAAATGCTCAGTGAGCTTGCAGTAATTCTTAAGGCTAAAAAA +TATACTGAGTTTGACAGTACAGTAACTCATGTTGTTGTTCCTGGTGATGCAGTTCAAAGTACCTTGAAGT +GTATGCTTGGGATTCTCAATGGATGCTGGATTCTAAAATTTGAATGGGTAAAAGCATGTCTACGAAGAAA +AGTATGTGAACAGGAAGAAAAGTATGAAATTCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAG +CTGTTGCCAAAGCTGTTTGATGGATGCTACTTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACA +ACCTTATTAAGCTCGTCACTGCAGGTGGGGGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGT +GACTCAGACCATCAATACAGTCGCATACCATGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTAT +ATCATCTATGAAGATTTGTGTAATTATCACCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTT +CGAGCTGGTTTATAGACTGTGTGATGTCCTTTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGAT +GAACATTTCAAATTGAATTTGCACGGTTTGTGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTT +TTACAAATAGGTAGAGTCATTCATATTTGTCTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTA +GGAATTCATGTTATGTTTACCATTTAGAAGCTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCA +TGTTTTTGATTTATCATGTCTTTCTATTCAGATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCT +TGGTTAAATAGACAAGTGGTATCATTACTGTTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAA +AAAACTTGCCTTTTTTTTTTTTTTTTTTTTAGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTAT +TGAAAAAAGAGTATTTGGTCTAAATGTGCCACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTAT +CCTATATTGTGTTCATTTCTTTTCTTAATAATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTT +TTTATCTTGTATATCATCAGGAAATTGTGATTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAA +ATCAACACTAGGCTCATGGTACATATTTTTATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTG +TTTATCTACTACATGTGTATATATACTTAGAGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAA +AAGGTCTGACCAGTCTAGCAAATTGTCAGTCCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTG +GTAAACCTTGTTGGTATTTGTAAAATAATTTTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTT +TTTTTTAAAGTTTTTAGGTTGGCATGGAGGCAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCC +AGATCATACAAAAGGCCATACAGTAAGTATAGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGC +AAGGCCTTAGTGAGTGGGCAGGATACCACCTGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGT +GCTCTCATTCATGAATCGACAAGGATACATTAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTT +TAATAATTCCTTCCTAGACATTGAATATACTTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGAC +TTGCCAGTTTGGTTCCTCATGAACAAAAGAGGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTT +TAAAATAGTGAGAATCTCTGAAGTTCATCAACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGT +TTATCATTTGAAAACACATTTTGCTTTAATTCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATA +TGAACAAAATAATAACCTTTTGACCCTGACCTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCA +GTAATGCATTTGTCCCACATTTCATTCTGATAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGC +GTTAGATAATGTCTGGATTAAATAATTTAAGACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACA +GACTTTAAGTCACTTTCTGTTGCCTCATAGGTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTG +AATTCCTGATTGTAAAGACACCTATGAGGTCTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCC +TCCCTTCTTTTTGTTGTTTTTCCCTGACTGTTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAG +CAGTTAGTTTGTGTTAAGCTCTTGAAACTTGTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTT +TTATTTTTCAATCATAGATTCAAGCTTCCTTCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCA +TATACCTGTGTCTTGTATAAAATTGGCTTATTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGG +AAGTCTATTAACTAACAAAAGCTTATCTTTTTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATAT +TTCTAAAGTGTACTAGATACTTTATTACCTTAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAA +TAGTCATTAAGAAACAATTACACACTGATTGCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCA +CATTCTCATGGCTATTTTCTAGTTCTACTTGAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCAC +TTTGTAGCTATTTTTCTGTCTCTGCTAATACTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTG +CTGAAAAATAGAAACCAGATGGGAAGTATATTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGT +GAAGGTTTTCACTGACTTCACCTAAAAGATAGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTT +TATTTCATCGGTCCCCCCACCTTTTTTTTTTTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTC +TGCCTAGAGGATGATATTTGGGGAGGTTTGATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTG +GGGCCACATTAGCTGTTATTGTTTCCATGGGTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCA +TGGGCCTCATTACAGTCACAATTGTCTATTCTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAA +TGCTTGTCTTATTTAATTACTAAAAGCCACCATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCA +TGTATTTCTTTATAAGTCAACCCTTTTCAAAGATACGCACATCAAACTGAATGAATAAATAAATATTGAG +AAGTTGAAAAAAAAAAAAAAAAA +>gi|543583795|ref|NR_104215.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 7, non-coding RNA +CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC +AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA +CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC +GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG +CTGCTGCGCTGCTCGCGTTGATTTGAAAGAAGATAAACCTAGGAAAAGTTTGTTTAATGATGCAGGAAAC +AAGAAGAATTCAATTAAAATGTGGTTTAGCCCTCGAAGTAAGAAAGTCAGATATGTTGTGAGTAAAGCTT +CAGTGCAAACCCAGCCTGCAATAAAAAAAGATGCAAGTGCTCAGCAAGACTCATATGAATTTGTTTCCCC +AAGTCCTCCTGCAGATGTTTCTGAGAGGGCTAAAAAGGCTTCTGCAAGATCTGGAAAAAAGCAAAAAAAG +AAAACTTTAGCTGAAATCAACCAAAAATGGAATTTAGAGGCAGAAAAAGAAGATGGTGAATTTGACTCCA +AAGAGGAATCTAAGCAAAAGCTGGTATCCTTCTGTAGCCAACCATCTGTTATCTCCAGTCCTCAGATAAA +TGGTGAAATAGACTTACTAGCAAGTGGCTCCTTGACAGAATCTGAATGTTTTGGAAGTTTAACTGAAGTC +TCTTTACCATTGGCTGAGCAAATAGAGTCTCCAGACACTAAGAGCAGGAATGAAGTAGTGACTCCTGAGA +AGGTCTGCAAAAATTATCTTACATCTAAGAAATCTTTGCCATTAGAAAATAATGGAAAACGTGGCCATCA +CAATAGACTTTCCAGTCCCATTTCTAAGAGATGTAGAACCAGCATTCTGAGCACCAGTGGAGATTTTGTT +AAGCAAACGGTGCCCTCAGAAAATATACCATTGCCTGAATGTTCTTCACCACCTTCATGCAAACGTAAAG +TTGGTGGTACATCAGGGAGGAAAAACAGTAACATGTCCGATGAATTCATTAGTCTTTCACCAGGTACACC +ACCTTCTACATTAAGTAGTTCAAGTTACAGGCGAGTGATGTCTAGTCCCTCAGCAATGAAGCTGTTGCCC +AATATGGCTGTGAAAAGAAATCATAGAGGAGAGACTTTGCTCCATATTGCTTCTATTAAGGGCGACATAC +CTTCTGTTGAATACCTTTTACAAAATGGAAGTGATCCAAATGTTAAAGACCATGCTGGATGGACACCATT +GCATGAAGCTTGCAATCATGGGCACCTGAAGGTAGTGGAATTATTGCTCCAGCATAAGGCATTGGTGAAC +ACCACCGGGTATCAAAATGACTCACCACTTCACGATGCAGCCAAGAATGGGCATGTGGATATAGTCAAGC +TGTTACTTTCCTATGGAGCCTCCAGAAATGCTGTTAATATATTTGGTCTGCGGCCTGTCGATTATACAGA +TGATGAAAGTATGAAATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCA +GTAATGAACACTGGGCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAAC +AGAAAATGCTCAGTGAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAAC +TCATGTTGTTGTTCCTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGC +TGGATTCTAAAATTTGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATG +AAATTCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATG +CTACTTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGT +GGGGGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCAT +ACCATGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTA +TCACCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATG +TCCTTTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGG +TTTGTGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATAT +TTGTCTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTA +GAAGCTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTA +TTCAGATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATT +ACTGTTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTT +TTTTAGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATG +TGCCACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTT +AATAATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATT +GTGATTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATAT +TTTTATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATAC +TTAGAGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGT +CAGTCCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAAT +AATTTTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATG +GAGGCAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAA +GTATAGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATAC +CACCTGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGAT +ACATTAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAAT +ATACTTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAA +AAGAGGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTC +ATCAACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTT +TAATTCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCC +TGACCTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATT +CTGATAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAAT +TTAAGACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTC +ATAGGTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATG +AGGTCTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTG +ACTGTTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAA +ACTTGTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCT +TCCTTCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGG +CTTATTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTAT +CTTTTTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATT +ACCTTAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACT +GATTGCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCT +ACTTGAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCT +AATACTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAG +TATATTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAA +AGATAGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTT +TTTTTTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGG +TTTGATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCC +ATGGGTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTC +TATTCTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAG +CCACCATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTT +TCAAAGATACGCACATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA +>gi|543583794|ref|NR_104212.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 6, non-coding RNA +CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC +AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA +CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC +GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG +CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT +TCTGTAGATTTGAAAGAAGATAAACCTAGGAAAAGTTTGTTTAATGATGCAGGAAACAAGAAGAATTCAA +TTAAAATGTGGTTTAGCCCTCGAAGTAAGAAAGTCAGATATGTTGTGAGTAAAGCTTCAGTGCAAACCCA +GCCTGCAATAAAAAAAGATGCAAGTGCTCAGCAAGACTCATATGAATTTGTTTCCCCAAGTCCTCCTGCA +GATGTTTCTGAGAGGGCTAAAAAGGCTTCTGCAAGATCTGGAAAAAAGCAAAAAAAGAAAACTTTAGCTG +AAATCAACCAAAAATGGAATTTAGAGGCAGAAAAAGAAGATGGTGAATTTGACTCCAAAGAGGAATCTAA +GCAAAAGCTGGTATCCTTCTGTAGCCAACCATCTGTTATCTCCAGTCCTCAGATAAATGGTGAAATAGAC +TTACTAGCAAGTGGCTCCTTGACAGAATCTGAATGTTTTGGAAGTTTAACTGAAGTCTCTTTACCATTGG +CTGAGCAAATAGAGTCTCCAGACACTAAGAGCAGGAATGAAGTAGTGACTCCTGAGAAGGTCTGCAAAAA +TTATCTTACATCTAAGAAATCTTTGCCATTAGAAAATAATGGAAAACGTGGCCATCACAATAGACTTTCC +AGTCCCATTTCTAAGAGATGTAGAACCAGCATTCTGAGCACCAGTGGAGATTTTGTTAAGCAAACGGTGC +CCTCAGAAAATATACCATTGCCTGAATGTTCTTCACCACCTTCATGCAAACGTAAAGTTGGTGGTACATC +AGGGAGGAAAAACAGTAACATGTCCGATGAATTCATTAGTCTTTCACCAGGTACACCACCTTCTACATTA +AGTAGTTCAAGTTACAGGCGAGTGATGTCTAGTCCCTCAGCAATGAAGCTGTTGCCCAATATGGCTGTGA +AAAGAAATCATAGAGGAGAGACTTTGCTCCATATTGCTTCTATTAAGGGCGACATACCTTCTGTTGAATA +CCTTTTACAAAATGGAAGTGATCCAAATGTTAAAGACCATGCTGGATGGACACCATTGCATGAAGCTTGC +AATCATGGGCACCTGAAGGTAGTGGAATTATTGCTCCAGCATAAGGCATTGGTGAACACCACCGGGTATC +AAAATGACTCACCACTTCACGATGCAGCCAAGAATGGGCATGTGGATATAGTCAAGCTGTTACTTTCCTA +TGGAGCCTCCAGAAATGCTGTTAATATATTTGGTCTGCGGCCTGTCGATTATACAGATGATGAAAGTATG +AAATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCAGTAATGAACACTG +GGCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAACAGAAAATGCTCAG +TGAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAACTCATGTTGTTGTT +CCTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGCTGGATTCTAAAAT +TTGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAATTCCTGAAGG +TCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTACTTCTATTTG +TGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGGGGCCAGATCC +TCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACCATGCGAGACC +CGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCACCCAGAGAGG +GTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCCTTTGAGTTGC +TTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTTGTGAGAGCCC +AGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTGTCTTTGAATC +AAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAAGCTGGGATTG +CTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTCAGATTATTGG +GTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACTGTTTGAGTCT +TTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTTTAGTAAACAG +AATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGCCACCATAGGT +GTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAATAATTTACTTT +GTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTGATTTAATCAT +TAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTTTATTCTGTAC +ATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTAGAGCATTTTC +TCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAGTCCAACGTCA +TTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAATTTTGAAGGTC +TTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAGGCAGAAGTTG +GTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTATAGAAGTAGG +TATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCACCTGAGAGTGG +CCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACATTAGATTATT +TTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATACTTATAAAAT +TAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAGAGGACAGTTT +GATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATCAACATCTTAA +GATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAATTCTTTCTTT +GACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGACCTTGCTGGG +TGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTGATAGAAAATG +AACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTAAGACTCTCTA +GGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATAGGTCACATTT +TAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGGTCTCTTAGTT +TTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACTGTTAAGCAGT +TTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACTTGTGATTGTA +CTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCCTTCTTTTTTA +CCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTTATTCTGTGCT +GTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTTTTTTAACATA +ATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACCTTAGATTATT +CCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGATTGCTTTGTGT +CTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACTTGAATTTATA +ACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAATACTTTACCAT +ATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTATATTAGCATTA +TGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGATAGTTTAGCT +ACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTTTTTTTGCACC +TGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTTGATGTTTCCT +GTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATGGGTCAGTGTG +GAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTATTCTGTTTCCT +ACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCACCATTTTCTT +TGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCAAAGATACGCA +CATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA +>gi|543583788|ref|NM_001282545.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 3, mRNA +CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC +AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA +CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC +GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG +CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT +TCTGTAGTAATATATTTGGTCTGCGGCCTGTCGATTATACAGATGATGAAAGTATGAAATCGCTATTGCT +GCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCAGTAATGAACACTGGGCAGCGTAGGGAT +GGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAACAGAAAATGCTCAGTGAGCTTGCAGTAA +TTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAACTCATGTTGTTGTTCCTGGTGATGCAGT +TCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGCTGGATTCTAAAATTTGAATGGGTAAAA +GCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAATTCCTGAAGGTCCACGCAGAAGCA +GGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTACTTCTATTTGTGGGGAACCTTCAA +ACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGGGGCCAGATCCTCAGTAGAAAGCCC +AAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACCATGCGAGACCCGATTCTGATCAGC +GCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCACCCAGAGAGGGTTCGGCAGGGCAA +AGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCCTTTGAGTTGCTTCCTCTTGACAGC +TGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTTGTGAGAGCCCAGTCATTGTACTGT +TTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTGTCTTTGAATCAAAAAAAAAAAAAA +AGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAAGCTGGGATTGCTTTTAAAGGTTTT +TCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTCAGATTATTGGGTATCAAAGATTAA +TGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACTGTTTGAGTCTTTTAATATTCTCCA +TACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTTTAGTAAACAGAATATTATCAAACA +ATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGCCACCATAGGTGTTAAATTCTCCTA +TCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAATAATTTACTTTGTTGTGTGTTTCTA +CACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTGATTTAATCATTAACATTGGTTTTT +TTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTTTATTCTGTACATTTGCTTGTAACT +ATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTAGAGCATTTTCTCTAACACATTTTA +ATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAGTCCAACGTCATTACTTTAAATTAA +GAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAATTTTGAAGGTCTTAATTTCTTCCTT +TGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAGGCAGAAGTTGGTGATTACTTGATT +TACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTATAGAAGTAGGTATGGGGAGGGCTT +ACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCACCTGAGAGTGGCCAGATGTGGGGAG +GTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACATTAGATTATTTTGAAACATTTTTT +TAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATACTTATAAAATTAAAGACTTGGGGA +AGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAGAGGACAGTTTGATAACTACCAGAA +TAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATCAACATCTTAAGATGCACTTACTTG +AAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAATTCTTTCTTTGACATGTTGTTTTT +TCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGACCTTGCTGGGTGAATTAGCTCTGA +AACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTGATAGAAAATGAACACCATAGCACC +AAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTAAGACTCTCTAGGATTTTGGTTGTC +ATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATAGGTCACATTTTAGACAGGTTTGTG +TCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGGTCTCTTAGTTTTTGTCATTCATTT +TCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACTGTTAAGCAGTTTCATCTTTGCTTT +TGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACTTGTGATTGTACTTTCTGTGTAGAT +ATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCCTTCTTTTTTACCACAAATCATTAA +AGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTTATTCTGTGCTGTTGAATGAGGCTC +AACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTTTTTTAACATAATGCTTTTTAATTA +ATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACCTTAGATTATTCCGAATACAGTATA +ACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGATTGCTTTGTGTCTCTAAAAGTGAGA +GGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACTTGAATTTATAACTGTTTCCCTTTT +TCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAATACTTTACCATATCTATCTCAATTG +TTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTATATTAGCATTATGATTGAAATAAGG +GTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGATAGTTTAGCTACTTGAATTTTAGT +AAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTTTTTTTGCACCTGCCTTGTAAATTT +AATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTTGATGTTTCCTGTGGGAATAAGACG +ATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATGGGTCAGTGTGGAAAATGCATTAAT +CATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTATTCTGTTTCCTACCCTGAACACATT +AAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCACCATTTTCTTTGATAGATTGAGCT +ACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCAAAGATACGCACATCAAACTGAATG +AATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA +>gi|543583786|ref|NM_001282543.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 2, mRNA +CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC +AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA +CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC +GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG +CTGCTGCGCTGCTCGCGTTGTAATTGTGTAAGTGACTGCATTGGAACTGGATGTCCAGTGTGTTACACCC +CGGCCTGGATACAAGACTTGAAGATAAATAGACAACTGGACAGCATGATTCAACTTTGTAGTAAGCTTCG +AAATTTGCTACATGACAATGAGCTGTCAGATTTGAAAGAAGATAAACCTAGGAAAAGTTTGTTTAATGAT +GCAGGAAACAAGAAGAATTCAATTAAAATGTGGTTTAGCCCTCGAAGTAAGAAAGTCAGATATGTTGTGA +GTAAAGCTTCAGTGCAAACCCAGCCTGCAATAAAAAAAGATGCAAGTGCTCAGCAAGACTCATATGAATT +TGTTTCCCCAAGTCCTCCTGCAGATGTTTCTGAGAGGGCTAAAAAGGCTTCTGCAAGATCTGGAAAAAAG +CAAAAAAAGAAAACTTTAGCTGAAATCAACCAAAAATGGAATTTAGAGGCAGAAAAAGAAGATGGTGAAT +TTGACTCCAAAGAGGAATCTAAGCAAAAGCTGGTATCCTTCTGTAGCCAACCATCTGTTATCTCCAGTCC +TCAGATAAATGGTGAAATAGACTTACTAGCAAGTGGCTCCTTGACAGAATCTGAATGTTTTGGAAGTTTA +ACTGAAGTCTCTTTACCATTGGCTGAGCAAATAGAGTCTCCAGACACTAAGAGCAGGAATGAAGTAGTGA +CTCCTGAGAAGGTCTGCAAAAATTATCTTACATCTAAGAAATCTTTGCCATTAGAAAATAATGGAAAACG +TGGCCATCACAATAGACTTTCCAGTCCCATTTCTAAGAGATGTAGAACCAGCATTCTGAGCACCAGTGGA +GATTTTGTTAAGCAAACGGTGCCCTCAGAAAATATACCATTGCCTGAATGTTCTTCACCACCTTCATGCA +AACGTAAAGTTGGTGGTACATCAGGGAGGAAAAACAGTAACATGTCCGATGAATTCATTAGTCTTTCACC +AGGTACACCACCTTCTACATTAAGTAGTTCAAGTTACAGGCGAGTGATGTCTAGTCCCTCAGCAATGAAG +CTGTTGCCCAATATGGCTGTGAAAAGAAATCATAGAGGAGAGACTTTGCTCCATATTGCTTCTATTAAGG +GCGACATACCTTCTGTTGAATACCTTTTACAAAATGGAAGTGATCCAAATGTTAAAGACCATGCTGGATG +GACACCATTGCATGAAGCTTGCAATCATGGGCACCTGAAGGTAGTGGAATTATTGCTCCAGCATAAGGCA +TTGGTGAACACCACCGGGTATCAAAATGACTCACCACTTCACGATGCAGCCAAGAATGGGCATGTGGATA +TAGTCAAGCTGTTACTTTCCTATGGAGCCTCCAGAAATGCTGTTAATATATTTGGTCTGCGGCCTGTCGA +TTATACAGATGATGAAAGTATGAAATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGC +CACTGCTCAGTAATGAACACTGGGCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTT +CAGAACAACAGAAAATGCTCAGTGAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAG +TACAGTAACTCATGTTGTTGTTCCTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTC +AATGGATGCTGGATTCTAAAATTTGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAG +AAAAGTATGAAATTCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTT +TGATGGATGCTACTTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTC +ACTGCAGGTGGGGGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATA +CAGTCGCATACCATGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTT +GTGTAATTATCACCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGAC +TGTGTGATGTCCTTTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAA +TTTGCACGGTTTGTGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGT +CATTCATATTTGTCTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTT +TACCATTTAGAAGCTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCAT +GTCTTTCTATTCAGATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGT +GGTATCATTACTGTTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTT +TTTTTTTTTTTTTAGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTG +GTCTAAATGTGCCACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATT +TCTTTTCTTAATAATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCAT +CAGGAAATTGTGATTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCAT +GGTACATATTTTTATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTG +TATATATACTTAGAGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTA +GCAAATTGTCAGTCCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTAT +TTGTAAAATAATTTTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAG +GTTGGCATGGAGGCAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCC +ATACAGTAAGTATAGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGG +GCAGGATACCACCTGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATC +GACAAGGATACATTAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAG +ACATTGAATATACTTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCT +CATGAACAAAAGAGGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCT +CTGAAGTTCATCAACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACAC +ATTTTGCTTTAATTCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACC +TTTTGACCCTGACCTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCA +CATTTCATTCTGATAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGA +TTAAATAATTTAAGACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTC +TGTTGCCTCATAGGTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAG +ACACCTATGAGGTCTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGT +TTTTCCCTGACTGTTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAA +GCTCTTGAAACTTGTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAG +ATTCAAGCTTCCTTCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTA +TAAAATTGGCTTATTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACA +AAAGCTTATCTTTTTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGA +TACTTTATTACCTTAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAA +TTACACACTGATTGCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTT +TCTAGTTCTACTTGAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCT +GTCTCTGCTAATACTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCA +GATGGGAAGTATATTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACT +TCACCTAAAAGATAGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCC +CACCTTTTTTTTTTTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATAT +TTGGGGAGGTTTGATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTT +ATTGTTTCCATGGGTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTC +ACAATTGTCTATTCTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAAT +TACTAAAAGCCACCATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGT +CAACCCTTTTCAAAGATACGCACATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAA +AAAAAA +>gi|543583785|ref|NM_000465.3| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 1, mRNA +CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC +AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA +CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC +GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG +CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT +TCTGTAGTAATTGTGTAAGTGACTGCATTGGAACTGGATGTCCAGTGTGTTACACCCCGGCCTGGATACA +AGACTTGAAGATAAATAGACAACTGGACAGCATGATTCAACTTTGTAGTAAGCTTCGAAATTTGCTACAT +GACAATGAGCTGTCAGATTTGAAAGAAGATAAACCTAGGAAAAGTTTGTTTAATGATGCAGGAAACAAGA +AGAATTCAATTAAAATGTGGTTTAGCCCTCGAAGTAAGAAAGTCAGATATGTTGTGAGTAAAGCTTCAGT +GCAAACCCAGCCTGCAATAAAAAAAGATGCAAGTGCTCAGCAAGACTCATATGAATTTGTTTCCCCAAGT +CCTCCTGCAGATGTTTCTGAGAGGGCTAAAAAGGCTTCTGCAAGATCTGGAAAAAAGCAAAAAAAGAAAA +CTTTAGCTGAAATCAACCAAAAATGGAATTTAGAGGCAGAAAAAGAAGATGGTGAATTTGACTCCAAAGA +GGAATCTAAGCAAAAGCTGGTATCCTTCTGTAGCCAACCATCTGTTATCTCCAGTCCTCAGATAAATGGT +GAAATAGACTTACTAGCAAGTGGCTCCTTGACAGAATCTGAATGTTTTGGAAGTTTAACTGAAGTCTCTT +TACCATTGGCTGAGCAAATAGAGTCTCCAGACACTAAGAGCAGGAATGAAGTAGTGACTCCTGAGAAGGT +CTGCAAAAATTATCTTACATCTAAGAAATCTTTGCCATTAGAAAATAATGGAAAACGTGGCCATCACAAT +AGACTTTCCAGTCCCATTTCTAAGAGATGTAGAACCAGCATTCTGAGCACCAGTGGAGATTTTGTTAAGC +AAACGGTGCCCTCAGAAAATATACCATTGCCTGAATGTTCTTCACCACCTTCATGCAAACGTAAAGTTGG +TGGTACATCAGGGAGGAAAAACAGTAACATGTCCGATGAATTCATTAGTCTTTCACCAGGTACACCACCT +TCTACATTAAGTAGTTCAAGTTACAGGCGAGTGATGTCTAGTCCCTCAGCAATGAAGCTGTTGCCCAATA +TGGCTGTGAAAAGAAATCATAGAGGAGAGACTTTGCTCCATATTGCTTCTATTAAGGGCGACATACCTTC +TGTTGAATACCTTTTACAAAATGGAAGTGATCCAAATGTTAAAGACCATGCTGGATGGACACCATTGCAT +GAAGCTTGCAATCATGGGCACCTGAAGGTAGTGGAATTATTGCTCCAGCATAAGGCATTGGTGAACACCA +CCGGGTATCAAAATGACTCACCACTTCACGATGCAGCCAAGAATGGGCATGTGGATATAGTCAAGCTGTT +ACTTTCCTATGGAGCCTCCAGAAATGCTGTTAATATATTTGGTCTGCGGCCTGTCGATTATACAGATGAT +GAAAGTATGAAATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCAGTAA +TGAACACTGGGCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAACAGAA +AATGCTCAGTGAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAACTCAT +GTTGTTGTTCCTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGCTGGA +TTCTAAAATTTGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAAT +TCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTAC +TTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGGG +GCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACCA +TGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCAC +CCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCCT +TTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTTG +TGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTGT +CTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAAG +CTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTCA +GATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACTG +TTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTTT +AGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGCC +ACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAATA +ATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTGA +TTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTTT +ATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTAG +AGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAGT +CCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAATT +TTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAGG +CAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTAT +AGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCACC +TGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACAT +TAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATAC +TTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAGA +GGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATCA +ACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAAT +TCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGAC +CTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTGA +TAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTAA +GACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATAG +GTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGGT +CTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACTG +TTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACTT +GTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCCT +TCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTTA +TTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTTT +TTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACCT +TAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGATT +GCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACTT +GAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAATA +CTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTATA +TTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGAT +AGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTTT +TTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTTG +ATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATGG +GTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTATT +CTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCAC +CATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCAA +AGATACGCACATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA +>gi|543583740|ref|NM_001282549.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 5, mRNA +CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC +AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA +CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC +GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG +CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT +TCTGTAGTAATTGTGTAAGTGACTGCATTGGAACTGGATGTCCAGTGTGTTACACCCCGGCCTGGATACA +AGACTTGAAGATAAATAGACAACTGGACAGCATGATTCAACTTTGTAGTAAGCTTCGAAATTTGCTACAT +GACAATGAGCTGTCAGGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAA +TTCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTA +CTTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGG +GGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACC +ATGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCA +CCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCC +TTTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTT +GTGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTG +TCTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAA +GCTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTC +AGATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACT +GTTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTT +TAGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGC +CACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAAT +AATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTG +ATTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTT +TATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTA +GAGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAG +TCCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAAT +TTTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAG +GCAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTA +TAGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCAC +CTGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACA +TTAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATA +CTTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAG +AGGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATC +AACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAA +TTCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGA +CCTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTG +ATAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTA +AGACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATA +GGTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGG +TCTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACT +GTTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACT +TGTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCC +TTCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTT +ATTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTT +TTTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACC +TTAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGAT +TGCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACT +TGAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAAT +ACTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTAT +ATTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGA +TAGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTT +TTTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTT +GATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATG +GGTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTAT +TCTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCA +CCATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCA +AAGATACGCACATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA +>gi|543583738|ref|NM_001282548.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 4, mRNA +CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC +AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA +CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC +GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG +CTGCTGCGCTGCTCGCGTTGTAATATATTTGGTCTGCGGCCTGTCGATTATACAGATGATGAAAGTATGA +AATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCAGTAATGAACACTGG +GCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAACAGAAAATGCTCAGT +GAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAACTCATGTTGTTGTTC +CTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGCTGGATTCTAAAATT +TGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAATTCCTGAAGGT +CCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTACTTCTATTTGT +GGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGGGGCCAGATCCT +CAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACCATGCGAGACCC +GATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCACCCAGAGAGGG +TTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCCTTTGAGTTGCT +TCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTTGTGAGAGCCCA +GTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTGTCTTTGAATCA +AAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAAGCTGGGATTGC +TTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTCAGATTATTGGG +TATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACTGTTTGAGTCTT +TTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTTTAGTAAACAGA +ATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGCCACCATAGGTG +TTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAATAATTTACTTTG +TTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTGATTTAATCATT +AACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTTTATTCTGTACA +TTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTAGAGCATTTTCT +CTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAGTCCAACGTCAT +TACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAATTTTGAAGGTCT +TAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAGGCAGAAGTTGG +TGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTATAGAAGTAGGT +ATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCACCTGAGAGTGGC +CAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACATTAGATTATTT +TGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATACTTATAAAATT +AAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAGAGGACAGTTTG +ATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATCAACATCTTAAG +ATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAATTCTTTCTTTG +ACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGACCTTGCTGGGT +GAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTGATAGAAAATGA +ACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTAAGACTCTCTAG +GATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATAGGTCACATTTT +AGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGGTCTCTTAGTTT +TTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACTGTTAAGCAGTT +TCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACTTGTGATTGTAC +TTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCCTTCTTTTTTAC +CACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTTATTCTGTGCTG +TTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTTTTTTAACATAA +TGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACCTTAGATTATTC +CGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGATTGCTTTGTGTC +TCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACTTGAATTTATAA +CTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAATACTTTACCATA +TCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTATATTAGCATTAT +GATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGATAGTTTAGCTA +CTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTTTTTTTGCACCT +GCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTTGATGTTTCCTG +TGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATGGGTCAGTGTGG +AAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTATTCTGTTTCCTA +CCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCACCATTTTCTTT +GATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCAAAGATACGCAC +ATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA +>gi|530384540|ref|XM_005249645.1| PREDICTED: Homo sapiens BRCA1-associated ATM activator 1 (BRAT1), transcript variant X4, mRNA +GTGCTGGGACTACAGAGTCCAGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGCTGTCCCA +TGTGCTGAAAGTCCAGGACCTGAGTTCTGGGGTCCTCTCCTTCTCACTGCGCCTGGCAGGAACCTTCGCA +GCCCAGGAAAACTGCTTCCAGTATCTTCAGCAGGGGGAGTTACTACCAGGGCTCTTTGGGGAGCCAGGAC +CCCTCGGCCGAGCAACCTGGGCCGTCCCCACCGTGCGCAGCGGCTGGATCCAGGGCCTGCGCTCCCTGGC +ACAGCACCCCAGCGCCCTGCGCTTCCTGGCCGACCATGGTGCGGTCGACACCATCTTCTCCCTGCAGGGA +GACTCCAGCCTGTTTGTGGCCTCGGCGGCCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCCATGCGAG +GTGGAGCCGAGGGGCAGCCCTGCCTGCCGGGGGGTGACTGGCCCGCGTGTGCCCAGAAGATCATGGATCA +CGTTGAAGAGTCCTTGTGCTCCGCGGCCACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGACCACGACC +TTCGGGCGCTGCCAGAGCCCCTGGACGGAAGCCCTGTGGGTGCGGCTGAGTCCCCGCGTGGCCTGTCTGC +TGGAGAGAGACCCCATCCCCGCCGCACACTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTTCTCCCGT +GTTCAGTTCTTCCGACGGCAGCCTGTGGGAGACAGTGGCGCGGGCTCTGAGCTGCCTGGGTCCCACCCAC +ATGGGACCCCTGGCTTTGGGGATCCTGAAGCTCGAGCACTGTCCACAGGCACTGAGGACCCAGGCCTTCC +AGGTCCTTCTCCAGCCCCTGGCCTGTGTCCTGAAGGCCACGGTTCAGGCCCCCGGACCCCCAGGCTTGCT +GGACGGGACGGCAGACGATGCCACGACGGTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGCCGGCCTC +CTGTGCCGCACCCTGGCTCACCTGGAGGAGCTGCAGCCGCTGCCCCAGCGCCCTTCACCGTGGCCCCAGG +CGTCTCTACTGGGGGCTACAGTGACTGTCCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCTCCAGTGT +GGGGGGCCACCTCTGTGGGACCCTGGCGGGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTTCCTGGGG +ACGCTGTCACAGGGGACAGGCCCCCAGGAGCTGGTGACGCAGGCGCTTGCTGTCCTCCTGGAGTGCCTCG +AGAGCCCCGGCTCCAGCCCCACGGTTCTGAAGAAGGCCTTCCAGGCCACGCTCAGGTGGCTCCTGAGCTC +ACCCAAGACCCCCGGCTGCTCTGATCTCGGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTTCCCTGTG +CTGCAGAAACGCCTGTGCCACCCCTGCTGGGAGGTGAGGGACTCCGCCCTCGAGTTCCTGACCCAGCTGA +GCAGGCACTGGGGAGGACAGGCTGACTTCAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGCTGGCCCT +GCAGCTCCTCCAGGACCCTGAGAGTTATGTCCGAGCGAGTGCAGTGACCGCCATGGGGCAGCTGTCCAGC +CAGGGCCTGCACGCCCCCACCAGCCCTGAGCATGCAGAGGCCCGGCAGATGGGTAAACTGAGGATTGGAG +GGCCGTGTGCTCACTGCGCAGCATGGGAAGGTGTCAGAGCGGGCTGTGGCCCTAGACTGCATGTCCGGGG +CCAGCCCCCATCATGTACCGGAGTCCTGTTGCGGGAGCCTCGCTCCTGCCACCCCACCAACCATCCGCAC +TTGCTCCCTGTCCCCCAGAGCCTGTTCCTGGAGCTCCTGCACATCCTCTCCGTAGACTCGGAGGGCTTCC +CACGGCGGGCGGTCATGCAAGTCTTCACTGAGTGGCTGCGGGACGGCCACGCCGACGCGGCCCAGGACAC +GGAGCAGTTCGTGGCCACTGTGCTGCAGGCGGCGAGCCGAGACCTGGACTGGGAGGTCCGCGCCCAGGGC +CTGGAGCTGGCCCTCGTGTTCCTGGGCCAGACTTTGGGGCCGCCGCGTACCCACTGCCCCTATGCCGTGG +CCCTACCCGAGGTGGCCCCAGCCCAGCCACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGGGGCTCTT +TGACTTCGCCTTTTGTGCCTTGTTTGACTGCGACCGCCCTGTGGCGCAGAAGTCTTGTGACCTCCTTCTC +TTCCTGAGGGACAAGATTGCTTCCTACAGCAGCCTGCGGGAGGCCAGGGGCAGCCCCAACACTGCCTCCG +CAGAGGCCACCCTGCCGAGGTGGCGGGCGGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGCCTGAGGC +TGTGCTGGCCATGCTCAGGTCCCTAGACCTGGAGGGCCTGCGGAGCACGCTGGCCGAGAGCAGCGACCAC +GTGGAAAAGAGTCCCCAGTCCCTCCTGCAGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGGGACGAGG +CCGACTGCTACTGAGCAGAACCAGAGTCTGCCACTGGGGCTCAGGACCAAGGGAGGCAGCACCATGTCCT +TCTGTGGGACACTGCCAGCCCCAGGGCTCCAGCCCAGCCCGGTGGATCCTCTGGGGAAGCCAGGACCAGG +AGAGAAGCAAGGTCAAGAAATCCCACAGTTTGATGTATTAAAGAAATGACTTATTTCTACTCAAAATAAA +TGGCATTGAAGTCTTTCTTTAA +>gi|530384538|ref|XM_005249644.1| PREDICTED: Homo sapiens BRCA1-associated ATM activator 1 (BRAT1), transcript variant X3, mRNA +ACCGGATGCTCGGCATGAACCACTAGGCGCCTGGCGGGGGTGATCTGTCGGAGCGACCGGCTTGGCGCCT +GCCTGTCCCCAGCCCCTCTCAGCTTGAACTCCTTCCTTCAAGTCTGGGCCCTCGAGGCTTCCAGAGCGGC +CTCCAGGGGTGCAGTCTCAGTTCCCCACGCCAGCCGTCTCCGTCCTCCGCCTCCTCCGGGCCTGGCAGGT +GGCACTGTCCGGAGGCGGAGCCTTGGGCGAGGGGTGGTTGCGGCGGAGGACGCAACCGAGCGGGCCTGCG +GCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCTCTGTGCTGTTCTGGTAGATCCCAGGCA +GCCGGTGGCAGATGACACCTGTTTGGAGAAGCTCCTGGACTGGTTTAAAACGGTCACTGAAGGAGAGTCC +AGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGCTGTCCCATGTGCTGAAAGTCCAGGACC +TGAGTTCTGGGGTCCTCTCCTTCTCACTGCGCCTGGCAGGAACCTTCGCAGCCCAGGAAAACTGCTTCCA +GTATCTTCAGGTGCGGTCGACACCATCTTCTCCCTGCAGGGAGACTCCAGCCTGTTTGTGGCCTCGGCGG +CCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCCATGCGAGGTGGAGCCGAGGGGCAGCCCTGCCTGCC +GGGGGGTGACTGGCCCGCGTGTGCCCAGAAGATCATGGATCACGTTGAAGAGTCCTTGTGCTCCGCGGCC +ACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGACCACGACCTTCGGGCGCTGCCAGAGCCCCTGGACGG +AAGCCCTGTGGGTGCGGCTGAGTCCCCGCGTGGCCTGTCTGCTGGAGAGAGACCCCATCCCCGCCGCACA +CTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTTCTCCCGTGTTCAGTTCTTCCGACGGCAGCCTGTGG +GAGACAGTGGCGCGGGCTCTGAGCTGCCTGGGTCCCACCCACATGGGACCCCTGGCTTTGGGGATCCTGA +AGCTCGAGCACTGTCCACAGGCACTGAGGACCCAGGCCTTCCAGGTCCTTCTCCAGCCCCTGGCCTGTGT +CCTGAAGGCCACGGTTCAGGCCCCCGGACCCCCAGGCTTGCTGGACGGGACGGCAGACGATGCCACGACG +GTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGCCGGCCTCCTGTGCCGCACCCTGGCTCACCTGGAGG +AGCTGCAGCCGCTGCCCCAGCGCCCTTCACCGTGGCCCCAGGCGTCTCTACTGGGGGCTACAGTGACTGT +CCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCTCCAGTGTGGGGGGCCACCTCTGTGGGACCCTGGCG +GGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTTCCTGGGGACGCTGTCACAGGGGACAGGCCCCCAGG +AGCTGGTGACGCAGGCGCTTGCTGTCCTCCTGGAGTGCCTCGAGAGCCCCGGCTCCAGCCCCACGGTTCT +GAAGAAGGCCTTCCAGGCCACGCTCAGGTGGCTCCTGAGCTCACCCAAGACCCCCGGCTGCTCTGATCTC +GGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTTCCCTGTGCTGCAGAAACGCCTGTGCCACCCCTGCT +GGGAGGTGAGGGACTCCGCCCTCGAGTTCCTGACCCAGCTGAGCAGGCACTGGGGAGGACAGGCTGACTT +CAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGCTGGCCCTGCAGCTCCTCCAGGACCCTGAGAGTTAT +GTCCGAGCGAGTGCAGTGACCGCCATGGGGCAGCTGTCCAGCCAGGGCCTGCACGCCCCCACCAGCCCTG +AGCATGCAGAGGCCCGGCAGATGGGTAAACTGAGGATTGGAGGGCCGTGTGCTCACTGCGCAGCATGGGA +AGGTGTCAGAGCGGGCTGTGGCCCTAGACTGCATGTCCGGGGCCAGCCCCCATCATGTACCGGAGTCCTG +TTGCGGGAGCCTCGCTCCTGCCACCCCACCAACCATCCGCACTTGCTCCCTGTCCCCCAGAGCCTGTTCC +TGGAGCTCCTGCACATCCTCTCCGTAGACTCGGAGGGCTTCCCACGGCGGGCGGTCATGCAAGTCTTCAC +TGAGTGGCTGCGGGACGGCCACGCCGACGCGGCCCAGGACACGGAGCAGTTCGTGGCCACTGTGCTGCAG +GCGGCGAGCCGAGACCTGGACTGGGAGGTCCGCGCCCAGGGCCTGGAGCTGGCCCTCGTGTTCCTGGGCC +AGACTTTGGGGCCGCCGCGTACCCACTGCCCCTATGCCGTGGCCCTACCCGAGGTGGCCCCAGCCCAGCC +ACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGGGGCTCTTTGACTTCGCCTTTTGTGCCTTGTTTGAC +TGCGACCGCCCTGTGGCGCAGAAGTCTTGTGACCTCCTTCTCTTCCTGAGGGACAAGATTGCTTCCTACA +GCAGCCTGCGGGAGGCCAGGGGCAGCCCCAACACTGCCTCCGCAGAGGCCACCCTGCCGAGGTGGCGGGC +GGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGCCTGAGGCTGTGCTGGCCATGCTCAGGTCCCTAGAC +CTGGAGGGCCTGCGGAGCACGCTGGCCGAGAGCAGCGACCACGTGGAAAAGAGTCCCCAGTCCCTCCTGC +AGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGGGACGAGGCCGACTGCTACTGAGCAGAACCAGAGTC +TGCCACTGGGGCTCAGGACCAAGGGAGGCAGCACCATGTCCTTCTGTGGGACACTGCCAGCCCCAGGGCT +CCAGCCCAGCCCGGTGGATCCTCTGGGGAAGCCAGGACCAGGAGAGAAGCAAGGTCAAGAAATCCCACAG +TTTGATGTATTAAAGAAATGACTTATTTCTACTCAAAATAAATGGCATTGAAGTCTTTCTTTAA +>gi|530384536|ref|XM_005249643.1| PREDICTED: Homo sapiens BRCA1-associated ATM activator 1 (BRAT1), transcript variant X2, mRNA +TCTGTCGGAGCGACCGGCTTGGCGCCTGCCTGTCCCCAGCCCCTCTCAGCTTGAACTCCTTCCTTCAAGT +CTGGGCCCTCGAGGCTTCCAGAGCGGCCTCCAGGGGTGCAGTCTCAGTTCCCCACGCCAGCCGTCTCCGT +CCTCCGCCTCCTCCGGGCCTGGCAGGTGGCACTGTCCGGAGGCGGAGCCTTGGGCGAGGGGTGGTTGCGG +CGGAGGACGCAACCGAGCGGGCCTGCGGCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCT +CTGTGCTGTTCTGGTAGATCCCAGGCAGCCGGTGGCAGATGACACCTGTTTGGAGAAGCTCCTGGACTGG +TTTAAAACGGTCACTGAAGGAGAGTCCAGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGC +TGTCCCATGTGCTGAAAGTCCAGGACCTGAGTTCTGGGGTCCTCTCCTTCTCACTGCGCCTGGCAGGAAC +CTTCGCAGCCCAGGAAAACTGCTTCCAGTATCTTCAGCAGGGGGAGTTACTACCAGGGCTCTTTGGGGAG +CCAGGACCCCTCGGCCGAGCAACCTGGGCCGTCCCCACCGTGCGCAGCGGCTGGATCCAGGGCCTGCGCT +CCCTGGCACAGCACCCCAGCGCCCTGCGCTTCCTGGCCGACCATGGTGCGGTCGACACCATCTTCTCCCT +GCAGGGAGACTCCAGCCTGTTTGTGGCCTCGGCGGCCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCC +ATGCGAGGTGGAGCCGAGGGGCAGCCCTGCCTGCCGGGGGGTGACTGGCCCGCGTGTGCCCAGAAGATCA +TGGATCACGTTGAAGAGTCCTTGTGCTCCGCGGCCACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGAC +CACGACCTTCGGGCGCTGCCAGAGCCCCTGGACGGAAGCCCTGTGGGTGCGGCTGAGTCCCCGCGTGGCC +TGTCTGCTGGAGAGAGACCCCATCCCCGCCGCACACTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTT +CTCCCGTGTTCAGTTCTTCCGACGGCAGCCTGTGGGAGACAGTGGCGCGGGCTCTGAGCTGCCTGGGTCC +CACCCACATGGGACCCCTGGCTTTGGGGATCCTGAAGCTCGAGCACTGTCCACAGGCACTGAGGACCCAG +GCCTTCCAGGTCCTTCTCCAGCCCCTGGCCTGTGTCCTGAAGGCCACGGTTCAGGCCCCCGGACCCCCAG +GCTTGCTGGACGGGACGGCAGACGATGCCACGACGGTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGC +CGGCCTCCTGTGCCGCACCCTGGCTCACCTGGAGGAGCTGCAGCCGCTGCCCCAGCGCCCTTCACCGTGG +CCCCAGGCGTCTCTACTGGGGGCTACAGTGACTGTCCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCT +CCAGTGTGGGGGGCCACCTCTGTGGGACCCTGGCGGGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTT +CCTGGGGACGCTGTCACAGGGGACAGGCCCCCAGGAGCTGGTGACGCAGGCGCTTGCTGTCCTCCTGGAG +TGCCTCGAGAGCCCCGGCTCCAGCCCCACGGTTCTGAAGAAGGCCTTCCAGGCCACGCTCAGGTGGCTCC +TGAGCTCACCCAAGACCCCCGGCTGCTCTGATCTCGGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTT +CCCTGTGCTGCAGAAACGCCTGTGCCACCCCTGCTGGGAGGTGAGGGACTCCGCCCTCGAGTTCCTGACC +CAGCTGAGCAGGCACTGGGGAGGACAGGCTGACTTCAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGC +TGGCCCTGCAGCTCCTCCAGGACCCTGAGAGTTATGTCCGAGCGAGTGCAGTGACCGCCATGGGGCAGCT +GTCCAGCCAGGGCCTGCACGCCCCCACCAGCCCTGAGCATGCAGAGGCCCGGCAGATGGGTAAACTGAGG +ATTGGAGGGCCGTGTGCTCACTGCGCAGCATGGGAAGGTGTCAGAGCGGGCTGTGGCCCTAGACTGCATG +TCCGGGGCCAGCCCCCATCATGTACCGGAGTCCTGTTGCGGGAGCCTCGCTCCTGCCACCCCACCAACCA +TCCGCACTTGCTCCCTGTCCCCCAGAGCCTGTTCCTGGAGCTCCTGCACATCCTCTCCGTAGACTCGGAG +GGCTTCCCACGGCGGGCGGTCATGCAAGTCTTCACTGAGTGGCTGCGGGACGGCCACGCCGACGCGGCCC +AGGACACGGAGCAGTTCGTGGCCACTGTGCTGCAGGCGGCGAGCCGAGACCTGGACTGGGAGGTCCGCGC +CCAGGGCCTGGAGCTGGCCCTCGTGTTCCTGGGCCAGACTTTGGGGCCGCCGCGTACCCACTGCCCCTAT +GCCGTGGCCCTACCCGAGGTGGCCCCAGCCCAGCCACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGG +GGCTCTTTGACTTCGCCTTTTGTGCCTTGTTTGACTGCGACCGCCCTGTGGCGCAGAAGTCTTGTGACCT +CCTTCTCTTCCTGAGGGACAAGATTGCTTCCTACAGCAGCCTGCGGGAGGCCAGGGGCAGCCCCAACACT +GCCTCCGCAGAGGCCACCCTGCCGAGGTGGCGGGCGGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGC +CTGAGGCTGTGCTGGCCATGCTCAGGTCCCTAGACCTGGAGGGCCTGCGGAGCACGCTGGCCGAGAGCAG +CGACCACGTGGAAAAGAGTCCCCAGTCCCTCCTGCAGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGG +GACGAGGCCGACTGCTACTGAGCAGAACCAGAGTCTGCCACTGGGGCTCAGGACCAAGGGAGGCAGCACC +ATGTCCTTCTGTGGGACACTGCCAGCCCCAGGGCTCCAGCCCAGCCCGGTGGATCCTCTGGGGAAGCCAG +GACCAGGAGAGAAGCAAGGTCAAGAAATCCCACAGTTTGATGTATTAAAGAAATGACTTATTTCTACTCA +AAATAAATGGCATTGAAGTCTTTCTTTAA +>gi|530384534|ref|XM_005249642.1| PREDICTED: Homo sapiens BRCA1-associated ATM activator 1 (BRAT1), transcript variant X1, mRNA +GCGACCGGCTTGGCGCCTGCCTGTCCCCAGCCCCTCTCAGCTTGAACTCCTTCCTTCAAGTCTGGGCCCT +CGAGGCTTCCAGAGCGGCCTCCAGGGGTGCAGTCTCAGTTCCCCACGCCAGCCGTCTCCGTCCTCCGCCT +CCTCCGGGCCTGGCAGGTGGCACTGTCCGGAGGCGGAGCCTTGGGCGAGGGGTGGTTGCGGCGGAGGACG +CAACCGAGCGGGCCTGCGGCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCTCTGTGCTGT +TCTGGTAGATCCCAGGCAGCCGGTGGCAGATGACACCTGTTTGGAGAAGCTCCTGGACTGGTTTAAAACG +GTCACTGAAGGAGAGTCCAGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGCTGTCCCATG +TGCTGAAAGTCCAGGACCTGAGTTCTGGGGTCCTCTCCTTCTCACTGCGCCTGGCAGGAACCTTCGCAGC +CCAGGAAAACTGCTTCCAGTATCTTCAGGGGGAGTTACTACCAGGGCTCTTTGGGGAGCCAGGACCCCTC +GGCCGAGCAACCTGGGCCGTCCCCACCGTGCGCAGCGGCTGGATCCAGGGCCTGCGCTCCCTGGCACAGC +ACCCCAGCGCCCTGCGCTTCCTGGCCGACCATGGTGCGGTCGACACCATCTTCTCCCTGCAGGGAGACTC +CAGCCTGTTTGTGGCCTCGGCGGCCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCCATGCGAGGTGGA +GCCGAGGGGCAGCCCTGCCTGCCGGGGGGTGACTGGCCCGCGTGTGCCCAGAAGATCATGGATCACGTTG +AAGAGTCCTTGTGCTCCGCGGCCACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGACCACGACCTTCGG +GCGCTGCCAGAGCCCCTGGACGGAAGCCCTGTGGGTGCGGCTGAGTCCCCGCGTGGCCTGTCTGCTGGAG +AGAGACCCCATCCCCGCCGCACACTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTTCTCCCGTGTTCA +GTTCTTCCGACGGCAGCCTGTGGGAGACAGTGGCGCGGGCTCTGAGCTGCCTGGGTCCCACCCACATGGG +ACCCCTGGCTTTGGGGATCCTGAAGCTCGAGCACTGTCCACAGGCACTGAGGACCCAGGCCTTCCAGGTC +CTTCTCCAGCCCCTGGCCTGTGTCCTGAAGGCCACGGTTCAGGCCCCCGGACCCCCAGGCTTGCTGGACG +GGACGGCAGACGATGCCACGACGGTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGCCGGCCTCCTGTG +CCGCACCCTGGCTCACCTGGAGGAGCTGCAGCCGCTGCCCCAGCGCCCTTCACCGTGGCCCCAGGCGTCT +CTACTGGGGGCTACAGTGACTGTCCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCTCCAGTGTGGGGG +GCCACCTCTGTGGGACCCTGGCGGGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTTCCTGGGGACGCT +GTCACAGGGGACAGGCCCCCAGGAGCTGGTGACGCAGGCGCTTGCTGTCCTCCTGGAGTGCCTCGAGAGC +CCCGGCTCCAGCCCCACGGTTCTGAAGAAGGCCTTCCAGGCCACGCTCAGGTGGCTCCTGAGCTCACCCA +AGACCCCCGGCTGCTCTGATCTCGGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTTCCCTGTGCTGCA +GAAACGCCTGTGCCACCCCTGCTGGGAGGTGAGGGACTCCGCCCTCGAGTTCCTGACCCAGCTGAGCAGG +CACTGGGGAGGACAGGCTGACTTCAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGCTGGCCCTGCAGC +TCCTCCAGGACCCTGAGAGTTATGTCCGAGCGAGTGCAGTGACCGCCATGGGGCAGCTGTCCAGCCAGGG +CCTGCACGCCCCCACCAGCCCTGAGCATGCAGAGGCCCGGCAGATGGGTAAACTGAGGATTGGAGGGCCG +TGTGCTCACTGCGCAGCATGGGAAGGTGTCAGAGCGGGCTGTGGCCCTAGACTGCATGTCCGGGGCCAGC +CCCCATCATGTACCGGAGTCCTGTTGCGGGAGCCTCGCTCCTGCCACCCCACCAACCATCCGCACTTGCT +CCCTGTCCCCCAGAGCCTGTTCCTGGAGCTCCTGCACATCCTCTCCGTAGACTCGGAGGGCTTCCCACGG +CGGGCGGTCATGCAAGTCTTCACTGAGTGGCTGCGGGACGGCCACGCCGACGCGGCCCAGGACACGGAGC +AGTTCGTGGCCACTGTGCTGCAGGCGGCGAGCCGAGACCTGGACTGGGAGGTCCGCGCCCAGGGCCTGGA +GCTGGCCCTCGTGTTCCTGGGCCAGACTTTGGGGCCGCCGCGTACCCACTGCCCCTATGCCGTGGCCCTA +CCCGAGGTGGCCCCAGCCCAGCCACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGGGGCTCTTTGACT +TCGCCTTTTGTGCCTTGTTTGACTGCGACCGCCCTGTGGCGCAGAAGTCTTGTGACCTCCTTCTCTTCCT +GAGGGACAAGATTGCTTCCTACAGCAGCCTGCGGGAGGCCAGGGGCAGCCCCAACACTGCCTCCGCAGAG +GCCACCCTGCCGAGGTGGCGGGCGGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGCCTGAGGCTGTGC +TGGCCATGCTCAGGTCCCTAGACCTGGAGGGCCTGCGGAGCACGCTGGCCGAGAGCAGCGACCACGTGGA +AAAGAGTCCCCAGTCCCTCCTGCAGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGGGACGAGGCCGAC +TGCTACTGAGCAGAACCAGAGTCTGCCACTGGGGCTCAGGACCAAGGGAGGCAGCACCATGTCCTTCTGT +GGGACACTGCCAGCCCCAGGGCTCCAGCCCAGCCCGGTGGATCCTCTGGGGAAGCCAGGACCAGGAGAGA +AGCAAGGTCAAGAAATCCCACAGTTTGATGTATTAAAGAAATGACTTATTTCTACTCAAAATAAATGGCA +TTGAAGTCTTTCTTTAA +>gi|530373237|ref|XM_005265508.1| PREDICTED: Homo sapiens BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) (BAP1), transcript variant X2, mRNA +GCATGCCCGCATCTGCTGTCCGACAGGCGGAAGACGAGCCCAGAGGCGGAGCAGGGCCGTCGCGCCTTGG +TGACGTCTGCCGCCGGCGCGGGCGGGTGACGCGACTGGGCCCGTTGTCTGTGTGTGGGACTGAGGGGCCC +CGGGGGCGGTGGGGGCTCCCGGTGGGGGCAGCGGTGGGGAGGGAGGGCCTGGACATGGCGCTGAGGGGCC +GCCCCGCGGGAAGATGAATAAGGGCTGGCTGGAGCTGGAGAGCGACCCAGGCCTCTTCACCCTGCTCGTG +GAAGATTTCGGTGTCAAGGGGGTGCAAGTGGAGGAGATCTACGACCTTCAGAGCAAATGTCAGGGCCCTG +TATATGGATTTATCTTCCTGTTCAAATGGATCGAAGAGCGCCGGTCCCGGCGAAAGGTCTCTACCTTGGT +GGATGATACGTCCGTGATTGATGATGATATTGTGAATAACATGTTCTTTGCCCACCAGCTGATACCCAAC +TCTTGTGCAACTCATGCCTTGCTGAGCGTGCTCCTGAACTGCAGCAGCGTGGACCTGGGACCCACCCTGA +GTCGCATGAAGGACTTCACCAAGGGTTTCAGCCCTGAGAGCAAAGGATATGCGATTGGCAATGCCCCGGA +GTTGGCCAAGGCCCATAATAGCCATGCCAGGCCCGAGCCACGCCACCTCCCTGAGAAGCAGAATGGCCTT +AGTGCAGTGCGGACCATGGAGGCGTTCCACTTTGTCAGCTATGTGCCTATCACAGGCCGGCTCTTTGAGC +TGGATGGGCTGAAGGTCTACCCCATTGACCATGGGCCCTGGGGGGAGGACGAGGAGTGGACAGACAAGGC +CCGGCGGGTCATCATGGAGCGTATCGGCCTCGCCACTGCAGGGATCAAGTATGAGGCCAGGCTGCATGTG +CTGAAGGTGAACCGTCAGACAGTACTAGAGGCTCTGCAGCAGCTGATAAGAGTAACACAGCCAGAGCTGA +TTCAGACCCACAAGTCTCAAGAGTCACAGCTGCCTGAGGAGTCCAAGTCAGCCAGCAACAAGTCCCCGCT +GGTGCTGGAAGCAAACAGGGCCCCTGCAGCCTCTGAGGGCAACCACACAGATGGTGCAGAGGAGGCGGCT +GGTTCATGCGCACAAGCCCCATCCCACAGCCCTCCCAACAAACCCAAGCTAGTGGTGAAGCCTCCAGGCA +GCAGCCTCAATGGGGTTCACCCCAACCCCACTCCCATTGTCCAGCGGCTGCCGGCCTTTCTAGACAATCA +CAATTATGCCAAGTCCCCCATGCAGGAGGAAGAAGACCTGGCGGCAGGTGTGGGCCGCAGCCGAGTTCCA +GTCCGCCCACCCCAGCAGTACTCAGATGATGAGGATGACTATGAGGATGACGAGGAGGATGACGTGCAGA +ACACCAACTCTGCCCTTAGGTATAAGGGGAAGGGAACAGGGAAGCCAGGGGCATTGAGCGGTTCTGCTGA +TGGGCAACTGTCAGTGCTGCAGCCCAACACCATCAACGTCTTGGCTGAGAAGCTCAAAGAGTCCCAGAAG +GACCTCTCAATTCCTCTGTCCATCAAGACTAGCAGCGGGGCTGGGAGTCCGGCTGTGGCAGTGCCCACAC +ACTCGCAGCCCTCACCCACCCCCAGCAATGAGAGTACAGACACGGCCTCTGAGATCGGCAGTGCTTTCAA +CTCGCCACTGCGCTCGCCTATCCGCTCAGCCAACCCGACGCGGCCCTCCAGCCCTGTCACCTCCCACATC +TCCAAGGTGCTTTTTGGAGAGGATGACAGCCTGCTGCGTGTTGACTGCATACGCTACAACCGTGCTGTCC +GTGATCTGGGTCCTGTCATCAGCACAGGCCTGCTGCACCTGGCTGAGGATGGGGTGCTGAGTCCCCTGGC +GCTGACAGAGGGTGGGAAGGGTTCCTCGCCCTCCATCAGACCAATCCAAGGCAGCCAGGGGTCCAGCAGC +CCAGTGGAGAAGGAGGTCGTGGAAGCCACGGACAGCAGAGAGAAGACGGGGATGGTGAGGCCTGGCGAGC +CCTTGAGTGGGGAGAAATACTCACCCAAGCTGCCTATTGCTCGTGGGGCTTTGTTGCTGGCCCGCCCCGA +TCAGAGGTGCAATGCTGGGTTTTGGCAGGAGCTGCTGGCACTGCTGAAGTGTGTGGAGGCTGAGATTGCA +AACTATGAGGCGTGCCTCAAGGAGGAGGTAGAGAAGAGGAAGAAGTTCAAGATTGATGACCAGAGAAGGA +CCCACAACTACGATGAGTTCATCTGCACCTTTATCTCCATGCTGGCTCAGGAAGGCATGCTGGCCAACCT +AGTGGAGCAGAACATCTCCGTGCGGCGGCGCCAAGGGGTCAGCATCGGCCGGCTCCACAAGCAGCGGAAG +CCTGACCGGCGGAAACGCTCTCGCCCCTACAAGGCCAAGCGCCAGTGAGGACTGCTGGCCCTGACTCTGC +AGCCCACTCTTGCCGTGTGGCCCTCACCAGGGTCCTTCCCTGCCCCACTTCCCCTTTTCCCAGTATTACT +GAATAGTCCCAGCTGGAGAGTCCAGGCCCTGGGAATGGGAGGAACCAGGCCACATTCCTTCCATCGTGCC +CTGAGGCCTGACACGGCAGATCAGCCCCATAGTGCTCAGGAGGCAGCATCTGGAGTTGGGGCACAGCGAG +GTACTGCAGCTTCCTCCACAGCCGGCTGTGGAGCAGCAGGACCTGGCCCTTCTGCCTGGGCAGCAGAATA +TATATTTTACCTATCAGAGACATCTATTTTTCTGGGCTCCAACCCAACATGCCACCATGTTGAC +>gi|530373235|ref|XM_005265507.1| PREDICTED: Homo sapiens BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) (BAP1), transcript variant X1, mRNA +GCATGCCCGCATCTGCTGTCCGACAGGCGGAAGACGAGCCCAGAGGCGGAGCAGGGCCGTCGCGCCTTGG +TGACGTCTGCCGCCGGCGCGGGCGGGTGACGCGACTGGGCCCGTTGTCTGTGTGTGGGACTGAGGGGCCC +CGGGGGCGGTGGGGGCTCCCGGTGGGGGCAGCGGTGGGGAGGGAGGGCCTGGACATGGCGCTGAGGGGCC +GCCCCGCGGGAAGATGAATAAGGGCTGGCTGGAGCTGGAGAGCGACCCAGGCCTCTTCACCCTGCTCGTG +GAAGATTTCGGTGTCAAGGGGGTGCAAGTGGAGGAGATCTACGACCTTCAGAGCAAATGTCAGGGCCCTG +TATATGGATTTATCTTCCTGTTCAAATGGATCGAAGAGCGCCGGTCCCGGCGAAAGGTCTCTACCTTGGT +GGATGATACGTCCGTGATTGATGATGATATTGTGAATAACATGTTCTTTGCCCACCAGCTGATACCCAAC +TCTTGTGCAACTCATGCCTTGCTGAGCGTGCTCCTGAACTGCAGCAGCGTGGACCTGGGACCCACCCTGA +GTCGCATGAAGGACTTCACCAAGGGTTTCAGCCCTGAGAGCAAAGGATATGCGATTGGCAATGCCCCGGA +GTTGGCCAAGGCCCATAATAGCCATGCCAGGCCCGAGCCACGCCACCTCCCTGAGAAGCAGAATGGCCTT +AGTGCAGTGCGGACCATGGAGGCGTTCCACTTTGTCAGCTATGTGCCTATCACAGGCCGGCTCTTTGAGC +TGGATGGGCTGAAGGTCTACCCCATTGACCATGGGCCCTGGGGGGAGGACGAGGAGTGGACAGACAAGGC +CCGGCGGGTCATCATGGAGCGTATCGGCCTCGCCACTGCAGGGGAGCCCTACCACGACATCCGCTTCAAC +CTGATGGCAGTGGTGCCCGACCGCAGGATCAAGTATGAGGCCAGGCTGCATGTGCTGAAGGTGAACCGTC +AGACAGTACTAGAGGCTCTGCAGCAGCTGATAAGAGTAACACAGCCAGAGCTGATTCAGACCCACAAGTC +TCAAGAGTCACAGCTGCCTGAGGAGTCCAAGTCAGCCAGCAACAAGTCCCCGCTGGTGCTGGAAGCAAAC +AGGGCCCCTGCAGCCTCTGAGGGCAACCACACAGATGGTGCAGAGGAGGCGGCTGGTTCATGCGCACAAG +CCCCATCCCACAGCCCTCCCAACAAACCCAAGCTAGTGGTGAAGCCTCCAGGCAGCAGCCTCAATGGGGT +TCACCCCAACCCCACTCCCATTGTCCAGCGGCTGCCGGCCTTTCTAGACAATCACAATTATGCCAAGTCC +CCCATGCAGGAGGAAGAAGACCTGGCGGCAGGTGTGGGCCGCAGCCGAGTTCCAGTCCGCCCACCCCAGC +AGTACTCAGATGATGAGGATGACTATGAGGATGACGAGGAGGATGACGTGCAGAACACCAACTCTGCCCT +TAGGTATAAGGGGAAGGGAACAGGGAAGCCAGGGGCATTGAGCGGTTCTGCTGATGGGCAACTGTCAGTG +CTGCAGCCCAACACCATCAACGTCTTGGCTGAGAAGCTCAAAGAGTCCCAGAAGGACCTCTCAATTCCTC +TGTCCATCAAGACTAGCAGCGGGGCTGGGAGTCCGGCTGTGGCAGTGCCCACACACTCGCAGCCCTCACC +CACCCCCAGCAATGAGAGTACAGACACGGCCTCTGAGATCGGCAGTGCTTTCAACTCGCCACTGCGCTCG +CCTATCCGCTCAGCCAACCCGACGCGGCCCTCCAGCCCTGTCACCTCCCACATCTCCAAGGTGCTTTTTG +GAGAGGATGACAGCCTGCTGCGTGTTGACTGCATACGCTACAACCGTGCTGTCCGTGATCTGGGTCCTGT +CATCAGCACAGGCCTGCTGCACCTGGCTGAGGATGGGGTGCTGAGTCCCCTGGCGCTGACAGAGGGTGGG +AAGGGTTCCTCGCCCTCCATCAGACCAATCCAAGGCAGCCAGGGGTCCAGCAGCCCAGTGGAGAAGGAGG +TCGTGGAAGCCACGGACAGCAGAGAGAAGACGGGGATGGTGAGGCCTGGCGAGCCCTTGAGTGGGGAGAA +ATACTCACCCAAGCTGCCTATTGCTCGTGGGGCTTTGTTGCTGGCCCGCCCCGATCAGAGGTGCAATGCT +GGGTTTTGGCAGGAGCTGCTGGCACTGCTGAAGTGTGTGGAGGCTGAGATTGCAAACTATGAGGCGTGCC +TCAAGGAGGAGGTAGAGAAGAGGAAGAAGTTCAAGATTGATGACCAGAGAAGGACCCACAACTACGATGA +GTTCATCTGCACCTTTATCTCCATGCTGGCTCAGGAAGGCATGCTGGCCAACCTAGTGGAGCAGAACATC +TCCGTGCGGCGGCGCCAAGGGGTCAGCATCGGCCGGCTCCACAAGCAGCGGAAGCCTGACCGGCGGAAAC +GCTCTCGCCCCTACAAGGCCAAGCGCCAGTGAGGACTGCTGGCCCTGACTCTGCAGCCCACTCTTGCCGT +GTGGCCCTCACCAGGGTCCTTCCCTGCCCCACTTCCCCTTTTCCCAGTATTACTGAATAGTCCCAGCTGG +AGAGTCCAGGCCCTGGGAATGGGAGGAACCAGGCCACATTCCTTCCATCGTGCCCTGAGGCCTGACACGG +CAGATCAGCCCCATAGTGCTCAGGAGGCAGCATCTGGAGTTGGGGCACAGCGAGGTACTGCAGCTTCCTC +CACAGCCGGCTGTGGAGCAGCAGGACCTGGCCCTTCTGCCTGGGCAGCAGAATATATATTTTACCTATCA +GAGACATCTATTTTTCTGGGCTCCAACCCAACATGCCACCATGTTGAC +>gi|530364726|ref|XR_241081.1| PREDICTED: Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant X4, misc_RNA +GTGTGGGAGGCCGGAAGTTGCGGCTTCATTACTCGCCATTTCAAAATGCTGCCGAGGCCCTAGGATCTGT +GACTGCCACCCCTCCCCCCACCCGGGCTCGGCGGGGGAGCGACTCATGGAGCTGCCGTAAGTTTTACCAA +CAGACTGCAGTTTCTTCACTACCAAAATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAG +TGCTTGCAGGATCTCTCCTGGACAAATCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCAT +GCAGCAGGTGCGCAAGGTGAAATGTTCACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGG +TGAAGCAACTTTATGATCAGCAGGAGCAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACT +GGGACGTCAGAGCTTCTCCGTGAAAGACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACT +TTAGCCACTGCTACTACAGCAAAGTGCAGAGGAAAGTTCCACTTCCAGAAAAAGAACTACAGAAGACGAT +ATCCCCACACTGCCTACCTCAGAGCATAAATGCATACATTCTAGAGAAGATGAAGACTTAATTGAAAATT +TAGCCCAAGATGAAACATCTAGGCTGGACCTTGGATTTGAGGAGTGGGATGTAGCTGGCCTGCCTTGGTG +GTTTTTAGGAAACTTGAGAAGCAACTATACACCTAGAAGTAATGGCTCAACTGATTTACAGACAAATCAG +GTGATTGAAGTGGGAAAAAATGATGACCTGGAGGACTCTAAGTCCTTAAGTGATGATACCGATGTAGAGG +TTACCTCTGAGGATGAGTGGCAGTGTACTGAATGCAAGAAATTTAACTCTCCAAGCAAGAGGTACTGTTT +TCGTTGTTGGGCCTTGAGGAAGGATTGGTATTCAGATTGTTCAAAGTTAACCCATTCTCTCTCCACGTCT +GATATCACTGCCATACCTGAAAAGGAAAA +>gi|530364725|ref|XR_241080.1| PREDICTED: Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant X3, misc_RNA +GTGTGGGAGGCCGGAAGTTGCGGCTTCATTACTCGCCATTTCAAAATGCTGCCGAGGCCCTAGGATCTGT +GACTGCCACCCCTCCCCCCACCCGGGCTCGGCGGGGGAGCGACTCATGGAGCTGCCGTAAGTTTTACCAA +CAGACTGCAGTTTCTTCACTACCAAAATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAG +TGCTTGCAGGATCTCTCCTGGACAAATCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCAT +GCAGCAGGTGCGCAAGGTGAAATGTTCACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGG +TGAAGCAACTTTATGATCAGCAGGAGCAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACT +GGGACGTCAGAGCTTCTCCGTGAAAGACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACT +TTAGCCACTGCTACTACAGCAAAGTGCAGAGGAAAGTTCCACTTCCAGAAAAAGAACTACAGAAGACGAT +ATCCCCACACTGCCTACCTCAGAGCATAAATGCATACATTCTAGAGAAGATGAAGACTTAATTGAAAATT +TAGCCCAAGATGAAACATCTAGGCTGGACCTTGGATTTGAGGAGTGGGATGTAGCTGGCCTGCCTTGGTG +GTTTTTAGGAAACTTGAGAAGCAACTATACACCTAGAAGTAATGGCTCAACTGATTTACAGACAAATCAG +GATGTGGGTACTGCCATTGTTTCAGATACTACAGATGACTTGTGGTTTTTGAATGAGTCAGTATCAGAGC +AGTTAGGTGTTGGAATAAAAGTTGAAGCTGCTGATACTGAACAAACAAGTGAAGAAGTAGGGAAAGTAAG +TGACAAAAAGGTGATTGAAGTGGGAAAAAATGATGACCTGGAGGACTCTAAGTCCTTAAGTGATGATACC +GATGTAGAGGTTACCTCTGAGGATGAGTGGCAGTGTACTGAATGCAAGAAATTTAACTCTCCAAGCAAGA +GGTACTGTTTTCGTTGTTGGGCCTTGAGGAAGGATTGGTATTCAGATTGTTCAAAGTTAACCCATTCTCT +CTCCACGTCTGATATCACTGCCATACCTGAAAAGGAAAATGAAGGAAATGATGTCCCTGATTGTCGAAGA +ACCATTTCGGCTCCTGTCGTTAGACCTAAAGATGCGTATATAAAGAAAGAAAACTCCAAACTTTTTGATC +CCTGCAACTCAGTGGAATTCTTGGATTTGGCTCACAGTTCTGAAAGCCAAGAGACCATCTCAAGCATGGG +AGAACAGTTAGATAACCTTTCTGAACAGAGAACAGATACAGAAAACATGGAGGATTGCCAGAATCTCTTG +AAGCCATGTAGCTTATGTGAGAAAAGACCACGAGACGGGAACATTATTCATGGAAGGACGGGCCATCTTG +TCACTTGTTTTCACTGTGCCAGAAGACTAAAGAAGGCTGGGGCTTCATGCCCTATTTGCAAGAAAGAGAT +TCAGCTGGATGCCAAAGAAGAGTGAATGGCCCACAAAGAGCCTGGTAGCACATACGCTTTTCAAAAGGTC +ATGCACTTACAGCTAAAGCCATTAAGGCTGAAGTGCAGTGGCGAGAGGTTCACGGCAGCCTTGACCTCCT +GGCTGAAGCGATCCAGCCATCTCAGCCCCCCGAGTAGCTGAGACCACAGGAGGGGGCTGATTGAAACTGA +AGAATAGTACAGTAGGAGGAGAGGACCAGGAGCTGAAAAGACAGGTCGCTATGTTGAGAGAGAGAGAGAG +GAAGAAAGATCTAATAGGACTTCAAAGGCTGTGGTAGATGTATTACTGTCAAAACCTGCGCAGCTTTTCT +CTACCAGGCCTTGGAAAAGATTGCACTTCCTGCACCACTGGCAGCGGGCTGGCCAATGGGATGCAAGTGG +AAATGAACTGTGCTATTCTGAGCAGAGGCTTAGGGACCATTGTGTGGGCTTAGGCAGATACTCCAATATT +TCTGACACATACATACACGGAAAACCTTGCAAGAGTGGAGAAAAGAAGGGAGAGGGTCTCACTCTGTCAC +CAGGCTGGAGTGCAGTGGCACAATCTAGGCTCACTGCAGCCTCGACCTCCCAGGTTCAAGCAATCCTCCC +ACCTCAGCCTCCCGGTTAGCTGGGACTATAGCTATGCGCCACCATGTCCCTATGTTGCCCAGCCTCGGTG +TCTGGATGCCCAGCCTAACCAAGTCAGCTTCCCATCTTTGGCTGAGACAAGGAGAACCCTGCTGGGCTAG +GGGACCCAGATAGTGACCAGGTTCTGCATGTGATTTCCCTGTGGAATTCCAACCAAGGACAGACAGTTAG +CCTAAAAACAACAGCAGAAGCAGCAGCAACAACGATGCTGAGTGCTGACTGCGAGCCTGGCTTCCTCGGA +GGGAGTTTACCGTGCGCTGCCTCCTTGGACCCTCATCACTGCCCTGCGAAGCAAGCACTTTCCTCACCCC +CTCTGTCTGGAGGAGGGCACTGAGGCACCGAGAAAACTGGGCAGGGGAGGCCCGAGAAGGAGAGGGTGGC +ACCGTCATTCTCACTTTCCAGCTGAGGACACGGATGGTTTCTATAACAGTGAATTTGCAAATAGTTGGAA +CCTCTGAAGTGCTTCCTCTCCTGGACTGGAAACCCCTTGAGGATGTGTACGGCACCCGCATCCCCTCCAT +CTGCACCCGCAGCCACAGCCACAGCCACAGCCAGCGCTATGTCCCGTTGCCATTCACATTCATACCTGCA +ACGTACACTCATACATGTGTCGGATATTTGCGAAGAAGCTCCCTTTCCCACCTAGGCCCCTCTTCTTTCC +TTTCCTTTCCTTTCCCTCCTCTACCTCTTTCCCTTCCTATTCTTCTGCTCCTCCTCCCTCCCAGCTGGTT +CCCTATTTCCCTTACCCCCTCAAACATCTCCCCTCTCTCCATCCCCACTCCCAATCTGCCAAACCCACCC +CCACCTAAAAATGTGGACCGTGGAGTCTCTGACCGAGGTTTCCTTTCCCAACATGGGGAGCCCGGGCTGG +CTGCGATTTGTTGGGGACAGAGATGGGATCTTGCTCTGTTGTTCAGGTGGTGGTTTCAAACTCCTGGCCT +CAAGTGATCCTCCTGCCTTGGCCTCCCAAAGCGCTGGGATTACAGGTGTGAGCCGCTGTGCCCAGGCCAA +TCCCAGAGATTTTGTTTTATTTTATGGCCCAGAAGATGATTTCTCGATACGAGTTTCACGAAGACTTGAA +AAGAATGTGTCCTCTGTTGTTGGATGGAGTGTCCTTGAAATGTTCATTAGCCTTCTAGCTCCATTCAGAA +GAGCCTCCGAAGTAGAGACCAGAAATCCTTCTAGTGGGCTGTGCTTTGAGCAGTACTGCTTGTTGACTGC +TTTACTTGGAAGGAGAGATCGACTGAGAATGTATAACATCAAGAGCTGCCCTAATGTGAACTGGAGACTT +CGAGTGACAACAATGTGCCCATGGAAAGAAGTGGACAAGACTCTGCTCTCTTCATGGAACCGAGTATTCT +AAGGACACAGCCAAGTCAGGAGACTACACCCCTAGTATAATAAGTCCTGTGGCTGTACTGAGAAGAGGTC +CTGACTCAGAACTGGAGGACATCATGGAAGGCTTCCTGGAGGAAGTGCCATCTAGGCTGAAACCTAAAGG +ATGAGTAGAACTAACCAGATGAAAAGGACAGCACTGGATTTGACTCATCCCTGCATCCCCCGAGCACCTC +GTGGGTGCCGTAAAGGCAGCTGGGTTGATGATGACTGAGTGAAGGAGCGCCTGAGTGGATGAGCCACTGA +GTGAATGAACTGGAGTTCATCTTCCACGTGGTCCTCAGCATCCACTCTAGAAGCCAAAGCCAAGCCTGAG +GGATCTAAAGCCTTGGGACTTCTGGATCTGCAAGTGGTCCCTGTTTTGGTAGCTATTGACTGACGAGGGG +CTCTTCGCCCCACAGGTGACTGCTGTAGCCTTGAGTGAGGACCTCGGCCAAAAAGAAGGCTCCTACCGTG +GCTGTTTGCTGATGGTCTTCGCAGAGCCTGCTGTCTTTGAGCTTCCTGAGAGAGGGACACTACCCTCGCT +TAGCCTGGCAGTGTTGCCCAGGAGGAGGCAGTGGAGTTAAGAAGCCTGGGTCTGAGCTCCTCAGCTGTGC +AGACAACTCCTACTTGTTCTTCAACGCTCAACTTTAAGTTCAGTCACCACCTGCAGAAGTCTTCTCCAAA +ACCTCCCCACCTGGCTGACTAAGGGGCTGGCTTTATGCTCTTGCAGTACTCATGCTTCCTACTGTCACAG +TTCTGACCACACCGTGGGAAAACGTCTCTAACTAGAGACCTGTCTTGCCTCTTGTGCCTGTAGTACGGGA +TGGGTGCCCAGTGTGTGTTGATTGTATGAATCAATCTCTGTGACTCCAGAGTTCCTTTCTTCAGGAGATT +AGACATCACCCCTGCAATCAACAATGCAAGCCACTGCTGTTTCCTCCATCCTGAGCATGAGGAACCTATC +CAGTTTCTCTCTCAGATGCCAGGGCCATGAGGCAAGTCCAGCCTTGGCCTAGAACCAAAGATGGAAACAA +AAAGGGGCCAGACTGTGTTGCCTTCTTGAGCCTGGTCTGACTCCTGAGTGGAAGTCTGATTCCAGGTACA +TGAGATAAGCACTAATACCTCCAGTTTGCAGATTAAGAGACTGAGGTCCTGAAGAGGTTAAAGAACTTGG +CTCAAGTCACATAGCTGGTGAGCAGCAAGATACAAGAATCAACCCAAGTCCAGGGGGCTGTGTGCCGTTT +ACACTTCACATCTGTGCTGCCAGGGCTGTAGCTATAAAAGCTTGAAAACCATTA +>gi|530364724|ref|XR_241079.1| PREDICTED: Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant X2, misc_RNA +AAGTTGCGGCTTCATTACTCGCCATTTCAAAATGCTGCCGAGGCCCTAGGATCTGTGACTGCCACCCCTC +CCCCCACCCGGGCTCGGCGGGGGAGCGACTCATGGAGCTGCCGTAAGTTTTACCAACAGACTGCAGTTTC +TTCACTACCAAAATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAGTGCTTGCAGGATCT +CTCCTGGACAAATCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCATGCAGCAGGTGCGCA +AGGTGAAATGTTCACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGGTGAAGCAACTTTAT +GATCAGCAGGAGCAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACTGGGACGTCAGAGCT +TCTCCGTGAAAGACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACTTTAGCCACTGCTAC +TACAGGATCACAGTATGGATATTCCAAGTCAAGACCAACTGAAGCAAAGTGCAGAGGAAAGTTCCACTTC +CAGAAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCTCAGAGCATAAATGCATACATTCTAGA +GAAGATGAAGACTTAATTGAAAATTTAGCCCAAGATGAAACATCTAGGCTGGACCTTGGATTTGAGGAGT +GGGATGTAGCTGGCCTGCCTTGGTGGTTTTTAGGAAACTTGAGAAGCAACTATACACCTAGAAGTAATGG +CTCAACTGATTTACAGACAAATCAGGATGTGGGTACTGCCATTGTTTCAGATACTACAGATGACTTGTGG +TTTTTGAATGAGTCAGTATCAGAGCAGTTAGGTGTTGGAATAAAAGTTGAAGCTGCTGATACTGAACAAA +CAAGTGAAGAAGTAGGGAAAGTAAGTGACAAAAAGGTGATTGAAGTGGGAAAAAATGATGACCTGGAGGA +CTCTAAGTCCTTAAGTGATGATACCGATGTAGAGGTTACCTCTGAGGATGAGTGGCAGTGTACTGAATGC +AAGAAATTTAACTCTCCAAGCAAGAGGTACTGTTTTCGTTGTTGGGCCTTGAGGAAGGATTGGTATTCAG +ATTGTTCAAAGTTAACCCATTCTCTCTCCACGTCTGATATCACTGCCATACCTGAAAAGGAAAATGAAGG +AAATGATGTCCCTGATTGTCGAAGAACCATTTCGGCTCCTGTCGTTAGACCTAAAGATGCGTATATAAAG +AAAGAAAACTCCAAACTTTTTGATCCCTGCAACTCAGTGGAATTCTTGGATTTGGCTCACAGTTCTGAAA +GCCAAGAGACCATCTCAAGCATGGGAGAACAGTTAGATAACCTTTCTGAACAGAGAACAGATACAGAAAA +CATGGAGGATTGCCAGAATCTCTTGAAGCCATGTAGCTTATGTGAGAAAAGACCACGAGACGGGAACATT +ATTCATGGAAGGACGGGCCATCTTGTCACTTGTTTTCACTGTGCCAGAAGACTAAAGAAGGCTGGGGCTT +CATGCCCTATTTGCAAGAAAGAGATTCAGCTGGTTATTAAGGTTTTTATAGCATAATGGTAGTACGAACA +TAAAAATGCATTTATTCCGTTCACTTACCACATTATTTGAAAATCAATCCTTTATTTAATTTTATTTCCA +ACCTGTCAGAGAATGTTCTTAGGCATCAAAATCCAAGGTAGCTGTAAGAAAAATACTGGAGCTAACAATG +AAGAACAGAAGTAATCTGATTAGTCAAATTATTAAGTGCCATGGATTACTTTATGCAGCAGTCAGGTACA +TAGTTAGGTGAACCCAAAAGAAAAACTCTTGAAAACAAGAGATTTCTTCCATGCACATTTACAATATTGA +GGTATAATTAACATGATAAAGTGTTTCCTTCTAACGAGTTGTAGAAATCTGAGTAACCACCCAAAAAAGC +AATAGAATGTTTCTGTCACCCCAAAACACTCCCTTCTGCCCCTCTTCAGACAGTCCTTCAGCTATTTCAT +GGCTCTCACCCTAGTTTTTTTTTTTTTTGCACTTTTTTTTTTCCGGGGGTATAGGGGAGGTGTGGGGCGA +CAGGGTCTGTCTTGTTCTGTCTCCCAGGCTGAAGTGCAGTGCAGTGGTATGATCATGGCTCACTGCAGCC +TTGGTTTCCTGGGCATAAGTGGTCTTCCCACTTCAGCCTCCTGAGTAGCTGAGACTATAGACTAGCATAA +CCACACTGGCTAATTTTTTGTGGAGATGAAGTCTCACTATGTTGCCCAGGCTGGTCTCGAACTCCTGGGC +TCAAACAATCCTCCCGCCTCAGCCTTCCAAATTGCTGGGATTATAGTCATGAGGCACCTAGTCTGGCCCT +TTTGCAAGACTTTAATCTGAAATCTAAATTTTTAAAATTTAAGTACTTACAAAGGATATACTATCCAACA +TATTGCATATTATATATGTGCTTTAAAGTTTTTTTTTTTTTTTGAGAGACGGTCTCACTTTGTCATCCAA +GCTGGAGTGCAGTGGTGCAAACACGGCCCACCTCCTGGGCTCAAGTGATCCTCCAGCCTCAGCTTCCCTC +ACAGGCATTCACTATCACTCCCAGCTAATTAAAATAATTTGTAGACGGTGTCTCGTTATGTTGCCCAGGC +TGGTCTCGAACTCCTGGGTTTAAGTGATTCCCCCGCCTCAGCCTCCCAAAGTGTTGGGCTTACAGCCTTG +AGCCACTATGCTTGGCTCAAAGATATTTTTATGAAAGCCCTGGGACTATAGATTTAGCTGATTAAATTTA +TAGAAAAAGTCCTGTCATA diff --git a/tests/test_feature_indexing.py b/tests/test_feature_indexing.py index 7c28606..562d89e 100644 --- a/tests/test_feature_indexing.py +++ b/tests/test_feature_indexing.py @@ -55,6 +55,33 @@ def test_build(self): result_index = open(index_file).read() assert result_index == expect_index + def test_build_issue_141(self): + expect_index = ("gi|563317589|dbj|AB821309.1| 3510 115 70 72\n" + "gi|557361099|gb|KF435150.1| 481 3842 70 72\n" + "gi|557361097|gb|KF435149.1| 642 4429 70 72\n" + "gi|543583796|ref|NR_104216.1| 4573 5213 70 72\n" + "gi|543583795|ref|NR_104215.1| 5317 10040 70 72\n" + "gi|543583794|ref|NR_104212.1| 5374 15631 70 72\n" + "gi|543583788|ref|NM_001282545.1| 4170 21274 70 72\n" + "gi|543583786|ref|NM_001282543.1| 5466 25679 70 72\n" + "gi|543583785|ref|NM_000465.3| 5523 31415 70 72\n" + "gi|543583740|ref|NM_001282549.1| 3984 37211 70 72\n" + "gi|543583738|ref|NM_001282548.1| 4113 41424 70 72\n" + "gi|530384540|ref|XM_005249645.1| 2752 45784 70 72\n" + "gi|530384538|ref|XM_005249644.1| 3004 48745 70 72\n" + "gi|530384536|ref|XM_005249643.1| 3109 51964 70 72\n" + "gi|530384534|ref|XM_005249642.1| 3097 55292 70 72\n" + "gi|530373237|ref|XM_005265508.1| 2794 58640 70 72\n" + "gi|530373235|ref|XM_005265507.1| 2848 61675 70 72\n" + "gi|530364726|ref|XR_241081.1| 1009 64742 70 72\n" + "gi|530364725|ref|XR_241080.1| 4884 65918 70 72\n" + "gi|530364724|ref|XR_241079.1| 2819 71079 70 72\n") + index_file = Faidx('data/issue_141.fasta').indexname + result_index = open(index_file).read() + os.remove('data/issue_141.fasta.fai') + print(result_index) + assert result_index == expect_index + def test_build_issue_111(self): expect_index = ("gi|563317589|dbj|AB821309 3510 114 70 71\n" "gi|557361099|gb|KF435150 481 3789 70 71\n"