ci.yml

# This file is part of REANA.
# Copyright (C) 2020, 2021, 2023, 2024 CERN.
#
# REANA is free software; you can redistribute it and/or modify it
# under the terms of the MIT License; see LICENSE file for more details.

name: CI

on:
  push:
  pull_request:
  schedule:
    - cron: '0 7 * * 1'

jobs:
  lint-commitlint:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: Setup Node
        uses: actions/setup-node@v4

      - name: Install commitlint
        run: |
          npm install conventional-changelog-conventionalcommits
          npm install commitlint@latest

      - name: Check commit message compliance of the recently pushed commit
        if: github.event_name == 'push'
        run: |
          ./run-tests.sh --check-commitlint HEAD~1 HEAD

      - name: Check commit message compliance of the pull request
        if: github.event_name == 'pull_request'
        run: |
          ./run-tests.sh --check-commitlint ${{ github.event.pull_request.head.sha }}~${{ github.event.pull_request.commits }} ${{ github.event.pull_request.head.sha }} ${{ github.event.pull_request.number }}

  lint-shellcheck:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Runs shell script static analysis
        run: |
          sudo apt-get install shellcheck
          ./run-tests.sh --check-shellcheck

  cwl-validate:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Validate CWL spec
        uses: reanahub/reana-github-actions/local-validate@v1
        with:
          reana_specs: reana-cwl*.yaml

  cwl-local-run:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Run CWL locally
        uses: reanahub/reana-github-actions/local-run@v1
        with:
          commands: |
            rm -rf cwl-local-run && mkdir -p cwl-local-run && cd cwl-local-run
            pip install cwltool
            cp -a ../code ../data . && cp ../workflow/cwl/helloworld-job.yml .
            cwltool --quiet --outdir="./results" ../workflow/cwl/helloworld.cwl helloworld-job.yml
            grep -q 'Hello Joe Bloggs!' results/greetings.txt
            cd .. && rm -rf cwl-local-run

  serial-validate:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Validate serial spec
        uses: reanahub/reana-github-actions/local-validate@v1
        with:
          reana_specs: reana.yaml reana-htcondorcern.yaml reana-slurmcern.yaml

  serial-local-run:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Run Serial locally
        uses: reanahub/reana-github-actions/local-run@v1
        with:
          commands: |
            rm -rf results && mkdir results
            docker run -i --rm -v `pwd`/code:/code -v `pwd`/data:/data -v `pwd`/results:/results docker.io/library/python:2.7-slim python /code/helloworld.py --sleeptime 0
            grep -q 'Hello Joe Bloggs!' results/greetings.txt
            rm -rf results

  snakemake-validate:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Validate Snakemake spec
        uses: reanahub/reana-github-actions/local-validate@v1
        with:
          reana_specs: reana-snakemake*.yaml

  snakemake-local-run:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Run Snakemake locally
        uses: reanahub/reana-github-actions/local-run@v1
        with:
          commands: |
            rm -rf snakemake-local-run && mkdir -p snakemake-local-run && cd snakemake-local-run
            pip install 'pulp<2.8' snakemake
            cp -a ../code ../data .
            snakemake -s ../workflow/snakemake/Snakefile --configfile ../workflow/snakemake/inputs.yaml -p --cores 1
            grep -q 'Hello Joe Bloggs!' results/greetings.txt
            cd .. && rm -rf snakemake-local-run

  yadage-validate:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Validate Yadage spec
        uses: reanahub/reana-github-actions/local-validate@v1
        with:
          reana_specs: reana-yadage*.yaml

  yadage-local-run:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Run Yadage locally
        uses: reanahub/reana-github-actions/local-run@v1
        with:
          commands: |
            rm -rf yadage-local-run/yadage-inputs && mkdir -p yadage-local-run/yadage-inputs && cd yadage-local-run
            pip install yadage
            cp -a ../code ../data yadage-inputs
            yadage-run . ../workflow/yadage/workflow.yaml -p sleeptime=0 -p inputfile=data/names.txt -p helloworld=code/helloworld.py -d initdir=`pwd`/yadage-inputs
            grep -q 'Hello Joe Bloggs!' helloworld/greetings.txt
            cd .. && rm -rf yadage-local-run