A cli utility enabling systematic search of all anti-phage systems in proteins using MacSyData and Mdm labs models.
The cli logic, using click.
The defense finder logic, calling macsydata with the models.
Updates the defense-finder models. Called during post-install and anytime later on.
A Github action is setup to trigger a package release everytime a tagged commit is pushed.
Note that you don't need to publish defense-finder everytime the models change: only changes in this repository are relevant.
Here are the steps to follow in order to publish defense-finder:
- find the current version in
defense_finder_cli/_version.py - get a new version number according to semantic versionning
- update the version un
defense_finder_cli/_version.py - commit this change, and tag the commit with
git tag -a v<your version number> -m '<your version number> <an optional message>' - push your commits to master
- run
git push origin v<your version>to sync the tags - wait for the Github actions task to complete.
- all set! install the new version with
pip install mdmparis-defense-finder==v<your-version>