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nschcolnicovmaxulysse
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Updated ch_fasta_fai channel
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CHANGELOG.md

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@@ -30,7 +30,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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- [#138](https://github.com/nf-core/rnavar/pull/138) - Proper usage of GVCF
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- [#142](https://github.com/nf-core/rnavar/pull/142) - Fix dbsnp channels
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- [#143](https://github.com/nf-core/rnavar/pull/143) - Use `DROP_MISSING_CONTIGS` by default in `GATK4_BEDTOINTERVALLIST`
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- [#145](https://github.com/nf-core/rnavar/pull/145) - Updated ch_gtf channel emitted by main.nf
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- [#145](https://github.com/nf-core/rnavar/pull/145) - Updated ch_gtf and ch_fasta_fai channels emitted by main.nf
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### Dependencies
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main.nf

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@@ -114,7 +114,7 @@ workflow NFCORE_RNAVAR {
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ch_gtf = PREPARE_GENOME.out.gtf
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ch_dict = params.dict ? Channel.fromPath(params.dict).map{ it -> [ [id:'dict'], it ] }.collect()
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: PREPARE_GENOME.out.dict
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ch_fasta_fai = params.fasta_fai ? Channel.fromPath(params.fasta_fai).map{ it -> [ [id:'fai'], it ] }.collect()
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ch_fasta_fai = params.fasta_fai ? Channel.fromPath(params.fasta_fai)
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: PREPARE_GENOME.out.fasta_fai
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ch_exon_bed = params.exon_bed ? Channel.fromPath(params.exon_bed).map{ it -> [ [id:'exon_bed'], it ] }.collect()
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: PREPARE_GENOME.out.exon_bed

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