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lines changed Original file line number Diff line number Diff line change @@ -30,7 +30,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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- [ #138 ] ( https://github.com/nf-core/rnavar/pull/138 ) - Proper usage of GVCF
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- [ #142 ] ( https://github.com/nf-core/rnavar/pull/142 ) - Fix dbsnp channels
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- [ #143 ] ( https://github.com/nf-core/rnavar/pull/143 ) - Use ` DROP_MISSING_CONTIGS ` by default in ` GATK4_BEDTOINTERVALLIST `
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- - [ #145 ] ( https://github.com/nf-core/rnavar/pull/145 ) - Updated ch_gtf channel emitted by main.nf
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+ - [ #145 ] ( https://github.com/nf-core/rnavar/pull/145 ) - Updated ch_gtf and ch_fasta_fai channels emitted by main.nf
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### Dependencies
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Original file line number Diff line number Diff line change @@ -114,7 +114,7 @@ workflow NFCORE_RNAVAR {
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ch_gtf = PREPARE_GENOME . out. gtf
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ch_dict = params. dict ? Channel . fromPath(params. dict). map{ it -> [ [id :' dict' ], it ] }. collect()
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: PREPARE_GENOME . out. dict
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- ch_fasta_fai = params. fasta_fai ? Channel . fromPath(params. fasta_fai). map{ it -> [ [ id : ' fai ' ], it ] } . collect()
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+ ch_fasta_fai = params. fasta_fai ? Channel . fromPath(params. fasta_fai)
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: PREPARE_GENOME . out. fasta_fai
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ch_exon_bed = params. exon_bed ? Channel . fromPath(params. exon_bed). map{ it -> [ [id :' exon_bed' ], it ] }. collect()
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: PREPARE_GENOME . out. exon_bed
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